comparison tools/rtg/genomesim.xml @ 1:8593828f91e7 default tip

Full galaxy wrapper

1:8593828f91e7

<tool id="rtg_genomesim" name="Simulate a genome">
  <description>with rtg genomesim</description>
  <command interpreter="bash">galaxy-rtg-wrapper.sh genomesim
--min-length $minlength --max-length $maxlength -n $numseqs --seed $seed
-o ${output.extra_files_path} >$output</command>
  <inputs>
    <param name="minlength" type="integer" value="20000" label="Minimum contig length"/>
    <param name="maxlength" type="integer" value="100000" label="Maximum contig length"/>
    <param name="numseqs" type="integer" value="10" label="Number of contigs"/>
    <param name="seed" type="integer" value="42" label="Seed" help="Seed for the random number generator"/>
  </inputs>
  <outputs>
    <data format="rtg_sdf" name="output" />
  </outputs>

  <help>
This tool creates an SDF containing randomly generated contigs representing a genome.
  </help>

</tool>