Mercurial > repos > diego > rtg_investigator
comparison tools/rtg/genomesim.xml @ 1:8593828f91e7 default tip
Full galaxy wrapper
author | diego |
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date | Sat, 21 Apr 2012 21:36:15 -0400 |
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0:d50638ebd809 | 1:8593828f91e7 |
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1 <tool id="rtg_genomesim" name="Simulate a genome"> | |
2 <description>with rtg genomesim</description> | |
3 <command interpreter="bash">galaxy-rtg-wrapper.sh genomesim | |
4 --min-length $minlength --max-length $maxlength -n $numseqs --seed $seed | |
5 -o ${output.extra_files_path} >$output</command> | |
6 <inputs> | |
7 <param name="minlength" type="integer" value="20000" label="Minimum contig length"/> | |
8 <param name="maxlength" type="integer" value="100000" label="Maximum contig length"/> | |
9 <param name="numseqs" type="integer" value="10" label="Number of contigs"/> | |
10 <param name="seed" type="integer" value="42" label="Seed" help="Seed for the random number generator"/> | |
11 </inputs> | |
12 <outputs> | |
13 <data format="rtg_sdf" name="output" /> | |
14 </outputs> | |
15 | |
16 <help> | |
17 This tool creates an SDF containing randomly generated contigs representing a genome. | |
18 </help> | |
19 | |
20 </tool> |