Mercurial > repos > diego > rtg_investigator

diff tools/rtg/sdf2fasta.xml @ 1:8593828f91e7 default tip

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Full galaxy wrapper
author diego
date Sat, 21 Apr 2012 21:36:15 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/rtg/sdf2fasta.xml	Sat Apr 21 21:36:15 2012 -0400
@@ -0,0 +1,20 @@
+<tool id="rtg_sdf2fasta" name="Extract FASTA" force_history_refresh="True">
+  <description>from SDF with sdf2fasta</description>
+  <command interpreter="bash">galaxy-rtg-sdf2fasta-wrapper.sh $output1 $output1.id $__new_file_path__
+-l $l 
+-i ${input.extra_files_path}
+-Z
+</command>
+  <inputs>
+    <param name="input" type="data" format="rtg_sdf" label="Source SDF"/>
+    <param name="l" type="integer" value="80" label="Line length"/>
+  </inputs>
+  <outputs>
+    <data name="output1" format="fasta"/>
+  </outputs>
+
+  <help>
+This tool converts an RTG SDF to FASTA.
+  </help>
+
+</tool>