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annotate test-data/lineage.txt @ 2:03c10736e497 draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
author earlhaminst
date Tue, 07 Nov 2017 11:45:13 -0500
parents
children 87b6de3ef63e
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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2
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
parents:
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1 Latimeria chalumnae Metazoa Chordata NA Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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2 Xenopus tropicalis Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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3 Ornithorhynchus anatinus Metazoa Chordata Mammalia Monotremata Ornithorhynchidae Ornithorhynchus Ornithorhynchus anatinus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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4 Macropus eugenii Metazoa Chordata Mammalia Diprotodontia Macropodidae Notamacropus Notamacropus eugenii
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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5 Sarcophilus harrisii Metazoa Chordata Mammalia Dasyuromorphia Dasyuridae Sarcophilus Sarcophilus harrisii
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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6 Monodelphis domestica Metazoa Chordata Mammalia Didelphimorphia Didelphidae Monodelphis Monodelphis domestica
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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7 Echinops telfairi Metazoa Chordata Mammalia NA Tenrecidae Echinops Echinops telfairi
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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8 Procavia capensis Metazoa Chordata Mammalia Hyracoidea Procaviidae Procavia Procavia capensis
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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9 Loxodonta africana Metazoa Chordata Mammalia Proboscidea Elephantidae Loxodonta Loxodonta africana
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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10 Dasypus novemcinctus Metazoa Chordata Mammalia Cingulata Dasypodidae Dasypus Dasypus novemcinctus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
parents:
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11 Choloepus hoffmanni Metazoa Chordata Mammalia Pilosa Megalonychidae Choloepus Choloepus hoffmanni
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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12 Ochotona princeps Metazoa Chordata Mammalia Lagomorpha Ochotonidae Ochotona Ochotona princeps
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
parents:
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13 Oryctolagus cuniculus Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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14 Cavia porcellus Metazoa Chordata Mammalia Rodentia Caviidae Cavia Cavia porcellus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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15 Ictidomys tridecemlineatus Metazoa Chordata Mammalia Rodentia Sciuridae Ictidomys Ictidomys tridecemlineatus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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16 Dipodomys ordii Metazoa Chordata Mammalia Rodentia Heteromyidae Dipodomys Dipodomys ordii
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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17 Rattus norvegicus Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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18 Mus musculus Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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19 Tupaia belangeri Metazoa Chordata Mammalia Scandentia Tupaiidae Tupaia Tupaia belangeri
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
parents:
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20 Otolemur garnettii Metazoa Chordata Mammalia Primates Galagidae Otolemur Otolemur garnettii
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
parents:
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21 Microcebus murinus Metazoa Chordata Mammalia Primates Cheirogaleidae Microcebus Microcebus murinus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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22 Tarsius syrichta Metazoa Chordata Mammalia Primates Tarsiidae Carlito Carlito syrichta
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
parents:
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23 Callithrix jacchus Metazoa Chordata Mammalia Primates Cebidae Callithrix Callithrix jacchus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
parents:
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24 Chlorocebus sabaeus Metazoa Chordata Mammalia Primates Cercopithecidae Chlorocebus Chlorocebus sabaeus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
parents:
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25 Papio anubis Metazoa Chordata Mammalia Primates Cercopithecidae Papio Papio anubis
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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26 Macaca mulatta Metazoa Chordata Mammalia Primates Cercopithecidae Macaca Macaca mulatta
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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27 Nomascus leucogenys Metazoa Chordata Mammalia Primates Hylobatidae Nomascus Nomascus leucogenys
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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28 Pongo abelii Metazoa Chordata Mammalia Primates Hominidae Pongo Pongo abelii
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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29 Gorilla gorilla gorilla Metazoa Chordata Mammalia Primates Hominidae Gorilla Gorilla gorilla
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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30 Pan troglodytes Metazoa Chordata Mammalia Primates Hominidae Pan Pan troglodytes
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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31 Homo sapiens Metazoa Chordata Mammalia Primates Hominidae Homo Homo sapiens
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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32 Sorex araneus Metazoa Chordata Mammalia Insectivora Soricidae Sorex Sorex araneus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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33 Erinaceus europaeus Metazoa Chordata Mammalia Insectivora Erinaceidae Erinaceus Erinaceus europaeus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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34 Pteropus vampyrus Metazoa Chordata Mammalia Chiroptera Pteropodidae Pteropus Pteropus vampyrus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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35 Myotis lucifugus Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis lucifugus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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36 Felis catus Metazoa Chordata Mammalia Carnivora Felidae Felis Felis catus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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37 Canis lupus familiaris Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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38 Mustela putorius furo Metazoa Chordata Mammalia Carnivora Mustelidae Mustela Mustela putorius
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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39 Ailuropoda melanoleuca Metazoa Chordata Mammalia Carnivora Ursidae Ailuropoda Ailuropoda melanoleuca
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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40 Equus caballus Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus caballus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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41 Vicugna pacos Metazoa Chordata Mammalia NA Camelidae Vicugna Vicugna pacos
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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42 Sus scrofa Metazoa Chordata Mammalia NA Suidae Sus Sus scrofa
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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43 Tursiops truncatus Metazoa Chordata Mammalia Cetacea Delphinidae Tursiops Tursiops truncatus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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44 Ovis aries Metazoa Chordata Mammalia NA Bovidae Ovis Ovis aries
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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45 Bos taurus Metazoa Chordata Mammalia NA Bovidae Bos Bos taurus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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46 Anolis carolinensis Metazoa Chordata NA Squamata Dactyloidae Anolis Anolis carolinensis
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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47 Pelodiscus sinensis Metazoa Chordata NA Testudines Trionychidae Pelodiscus Pelodiscus sinensis
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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48 Taeniopygia guttata Metazoa Chordata Aves Passeriformes Estrildidae Taeniopygia Taeniopygia guttata
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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49 Ficedula albicollis Metazoa Chordata Aves Passeriformes Muscicapidae Ficedula Ficedula albicollis
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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50 Anas platyrhynchos Metazoa Chordata Aves Anseriformes Anatidae Anas Anas platyrhynchos
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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51 Meleagris gallopavo Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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52 Gallus gallus Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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53 Lepisosteus oculatus Metazoa Chordata Actinopteri Semionotiformes Lepisosteidae Lepisosteus Lepisosteus oculatus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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54 Danio rerio Metazoa Chordata Actinopteri Cypriniformes Cyprinidae Danio Danio rerio
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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55 Astyanax mexicanus Metazoa Chordata Actinopteri Characiformes Characidae Astyanax Astyanax mexicanus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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56 Gadus morhua Metazoa Chordata Actinopteri Gadiformes Gadidae Gadus Gadus morhua
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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57 Oreochromis niloticus Metazoa Chordata Actinopteri Cichliformes Cichlidae Oreochromis Oreochromis niloticus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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58 Poecilia formosa Metazoa Chordata Actinopteri Cyprinodontiformes Poeciliidae Poecilia Poecilia formosa
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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59 Xiphophorus maculatus Metazoa Chordata Actinopteri Cyprinodontiformes Poeciliidae Xiphophorus Xiphophorus maculatus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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60 Gasterosteus aculeatus Metazoa Chordata Actinopteri Perciformes Gasterosteidae Gasterosteus Gasterosteus aculeatus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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61 Tetraodon nigroviridis Metazoa Chordata Actinopteri Tetraodontiformes Tetraodontidae Tetraodon Tetraodon nigroviridis
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
earlhaminst
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62 Takifugu rubripes Metazoa Chordata Actinopteri Tetraodontiformes Tetraodontidae Takifugu Takifugu rubripes