Mercurial > repos > ebi-gxa > ct_get_tool_pvals
comparison ct_get_tool_pvals.xml @ 2:4f8f5edb82c4 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
| author | ebi-gxa |
|---|---|
| date | Mon, 27 Apr 2020 09:31:14 -0400 |
| parents | f2ffa4fd4c2a |
| children | 39f348e76f41 |
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| 1:cb8921e0f4f0 | 2:4f8f5edb82c4 |
|---|---|
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 7 <command detect_errors="exit_code"><![CDATA[ | 7 <command detect_errors="exit_code"><![CDATA[ |
| 8 get_tool_pvals.R --input-table "${input_table}" --emp-dist-list "${emp_dist_list}" --output-table "${output_table}" ]]></command> | 8 get_tool_pvals.R --input-table "${input_table}" --emp-dist-list "${emp_dist_list}" --output-table "${output_table}" ]]></command> |
| 9 <inputs> | 9 <inputs> |
| 10 <param type="data" name="input_table" label="Table with tool stats" format="tsv" help="Path to the table of tool statistics from get_tool_performance_table.R" /> | 10 <param type="data" name="input_table" label="Table with tool stats" format="txt" help="Path to the table of tool statistics from get_tool_performance_table.R" /> |
| 11 <param type="data" name="emp_dist_list" label="List of empirical distributions" format="rdata" help="Path to the list of empirical distributions in .rds format" /> | 11 <param type="data" name="emp_dist_list" label="List of empirical distributions" format="rdata" help="Path to the list of empirical distributions in .rds format" /> |
| 12 </inputs> | 12 </inputs> |
| 13 <outputs> | 13 <outputs> |
| 14 <data name="output_table" format="tsv" /> | 14 <data name="output_table" format="txt" /> |
| 15 </outputs> | 15 </outputs> |
| 16 <tests> | 16 <tests> |
| 17 <test> | 17 <test> |
| 18 <param name="input_table" value="tool_perf_table.tsv" /> | 18 <param name="input_table" value="tool_perf_table.tsv" /> |
| 19 <param name="emp_dist_list" value="empirical_dist_list.rds" /> | 19 <param name="emp_dist_list" value="empirical_dist_list.rds" /> |