Mercurial > repos > ebi-gxa > decoupler_pseudobulk
comparison get_test_data.sh @ 5:893ff9213a34 draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 1034a450c97dcbb77871050cf0c6d3da90dac823
author | ebi-gxa |
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date | Fri, 15 Mar 2024 12:18:11 +0000 |
parents | 59a7f3f83aec |
children |
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4:f321c60167d4 | 5:893ff9213a34 |
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17 | 17 |
18 # get matrix data | 18 # get matrix data |
19 mkdir -p test-data | 19 mkdir -p test-data |
20 pushd test-data | 20 pushd test-data |
21 get_data $MTX_LINK $BASENAME_FILE | 21 get_data $MTX_LINK $BASENAME_FILE |
22 | |
23 | |
24 # Download input anndata for decoupler-pathway_inference | |
25 BASENAME_FILE='pbmc3k_processed.h5ad' | |
26 | |
27 MTX_LINK='https://zenodo.org/records/3752813/files/pbmc3k_processed.h5ad' | |
28 | |
29 get_data $MTX_LINK $BASENAME_FILE | |
30 | |
31 # Download output anndata for decoupler-pathway_inference | |
32 BASENAME_FILE='test.h5ad' | |
33 | |
34 MTX_LINK='https://zenodo.org/records/10401958/files/test.h5ad' | |
35 | |
36 get_data $MTX_LINK $BASENAME_FILE | |
37 |