Mercurial > repos > ebi-gxa > garnett_transform_markers

changeset 2:b35eef6b1fcc draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
author ebi-gxa
date Mon, 27 Apr 2020 09:34:03 -0400
parents 211241c50ccf
children 1dc49d16e96c
files garnett_transform_markers.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/garnett_transform_markers.xml	Fri Apr 24 11:21:40 2020 -0400
+++ b/garnett_transform_markers.xml	Mon Apr 27 09:34:03 2020 -0400
@@ -22,7 +22,6 @@
     ]]></command>
     <inputs>
         <param type="data" name="input_marker_file" format="txt" label="Input marker file" help="Path to the SCXA-style marker gene file in .txt format" />
-        <param type="data" name="marker_list" format="rdata" label="Marker list object" help="Path to a serialised object containing marker genes" />
         <param type="text" name="pval_col" value="pvals" label="p-value column name" help="Column name of marker p-values" />
         <param type="float" name="pval_threshold" value="0.05" label="p-value threshold" help="Cut-off p-value for marker genes" />
         <param type="text" name="groups_col" value="groups" label="groups column" help="Column name of cell groups (i.e. cluster IDs or cell types) in marker file" />
@@ -30,6 +29,7 @@
     </inputs>
     <outputs>
         <data name="garnett_marker_file" format="txt" />
+        <data name="marker_list" format="rdata" />
     </outputs>
     <tests>
         <test>