Mercurial > repos > ebi-gxa > monocle3_create

comparison monocle3-create.xml @ 1:a34f243f55a4 draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 08ac0ad9182623944c4546f8ea8db6a1a537f7eb
author ebi-gxa
date Wed, 29 Jan 2020 10:40:25 -0500
parents 75340a5e5fb0
children 2e446b0cb437
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0:75340a5e5fb0 1:a34f243f55a4
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="monocle3_create" name="Monocle3 create" version="@TOOL_VERSION@+galaxy0"> 2 <tool id="monocle3_create" name="Monocle3 create" version="@TOOL_VERSION@+galaxy1">
3 <description>a Monocle3 object from input data</description> 3 <description>a Monocle3 object from input data</description>
4 <macros> 4 <macros>
5 <import>monocle3-macros.xml</import> 5 <import>monocle3-macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
24 @OUTPUT_OPTS@ 24 @OUTPUT_OPTS@
25 @VERBOSE@ 25 @VERBOSE@
26 ]]></command> 26 ]]></command>
27 27
28 <inputs> 28 <inputs>
29 <param name="expression_matrix" argument="--expression-matrix" type="data" format="tsv,csv,rdata" label="Expression matrix, genes as rows, cells as columns. Required input. Provide as TSV, CSV or RDS."/> 29 <param name="expression_matrix" argument="--expression-matrix" type="data" format="tabular,tsv,csv,rdata" label="Expression matrix, genes as rows, cells as columns. Required input. Provide as TSV, CSV or RDS."/>
30 <param name="expression_matrix_format" type="select" label="Format of expression matrix"> 30 <param name="expression_matrix_format" type="select" label="Format of expression matrix">
31 <option value="rds" selected="true">RDS</option> 31 <option value="rds" selected="true">RDS</option>
32 <option value="tsv">TSV</option> 32 <option value="tsv">TSV</option>
33 <option value="csv">CSV</option> 33 <option value="csv">CSV</option>
34 </param> 34 </param>
35 <param name="cell_metadata" argument="--cell-metadata" optional="true" type="data" format="tsv,csv,rdata" label="Per-cell annotation, optional. Row names must match the column names of the expression matrix. Provide as TSV, CSV or RDS."/> 35 <param name="cell_metadata" argument="--cell-metadata" optional="true" type="data" format="tabular,tsv,csv,rdata" label="Per-cell annotation, optional. Row names must match the column names of the expression matrix. Provide as TSV, CSV or RDS."/>
36 <param name="cell_metadata_format" type="select" label="Format of cell metadata"> 36 <param name="cell_metadata_format" type="select" label="Format of cell metadata">
37 <option value="rds" selected="true">RDS</option> 37 <option value="rds" selected="true">RDS</option>
38 <option value="tsv">TSV</option> 38 <option value="tsv">TSV</option>
39 <option value="csv">CSV</option> 39 <option value="csv">CSV</option>
40 </param> 40 </param>
41 <param name="gene_annotation" argument="--gene-annotation" optional="true" type="data" format="tsv,csv,rdata" label="Per-gene annotation, optional. Row names must match the row names of the expression matrix. Provide as TSV, CSV or RDS."/> 41 <param name="gene_annotation" argument="--gene-annotation" optional="true" type="data" format="tabular,tsv,csv,rdata" label="Per-gene annotation, optional. Row names must match the row names of the expression matrix. Provide as TSV, CSV or RDS."/>
42 <param name="gene_annotation_format" type="select" label="Format of gene annotation"> 42 <param name="gene_annotation_format" type="select" label="Format of gene annotation">
43 <option value="rds" selected="true">RDS</option> 43 <option value="rds" selected="true">RDS</option>
44 <option value="tsv">TSV</option> 44 <option value="tsv">TSV</option>
45 <option value="csv">CSV</option> 45 <option value="csv">CSV</option>
46 </param> 46 </param>