Mercurial > repos > ebi-gxa > monocle3_create

diff monocle3-create.xml @ 1:a34f243f55a4 draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 08ac0ad9182623944c4546f8ea8db6a1a537f7eb
author ebi-gxa
date Wed, 29 Jan 2020 10:40:25 -0500
parents 75340a5e5fb0
children 2e446b0cb437
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--- a/monocle3-create.xml	Mon Sep 16 09:52:55 2019 -0400
+++ b/monocle3-create.xml	Wed Jan 29 10:40:25 2020 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="monocle3_create" name="Monocle3 create" version="@TOOL_VERSION@+galaxy0">
+<tool id="monocle3_create" name="Monocle3 create" version="@TOOL_VERSION@+galaxy1">
   <description>a Monocle3 object from input data</description>
   <macros>
     <import>monocle3-macros.xml</import>
@@ -26,19 +26,19 @@
 ]]></command>
 
   <inputs>
-    <param name="expression_matrix" argument="--expression-matrix" type="data" format="tsv,csv,rdata" label="Expression matrix, genes as rows, cells as columns. Required input. Provide as TSV, CSV or RDS."/>
+    <param name="expression_matrix" argument="--expression-matrix" type="data" format="tabular,tsv,csv,rdata" label="Expression matrix, genes as rows, cells as columns. Required input. Provide as TSV, CSV or RDS."/>
     <param name="expression_matrix_format" type="select" label="Format of expression matrix">
       <option value="rds" selected="true">RDS</option>
       <option value="tsv">TSV</option>
       <option value="csv">CSV</option>
     </param>
-    <param name="cell_metadata" argument="--cell-metadata" optional="true" type="data" format="tsv,csv,rdata" label="Per-cell annotation, optional. Row names must match the column names of the expression matrix. Provide as TSV, CSV or RDS."/>
+    <param name="cell_metadata" argument="--cell-metadata" optional="true" type="data" format="tabular,tsv,csv,rdata" label="Per-cell annotation, optional. Row names must match the column names of the expression matrix. Provide as TSV, CSV or RDS."/>
     <param name="cell_metadata_format" type="select" label="Format of cell metadata">
       <option value="rds" selected="true">RDS</option>
       <option value="tsv">TSV</option>
       <option value="csv">CSV</option>
     </param>
-    <param name="gene_annotation" argument="--gene-annotation" optional="true" type="data" format="tsv,csv,rdata" label="Per-gene annotation, optional. Row names must match the row names of the expression matrix. Provide as TSV, CSV or RDS."/>
+    <param name="gene_annotation" argument="--gene-annotation" optional="true" type="data" format="tabular,tsv,csv,rdata" label="Per-gene annotation, optional. Row names must match the row names of the expression matrix. Provide as TSV, CSV or RDS."/>
     <param name="gene_annotation_format" type="select" label="Format of gene annotation">
       <option value="rds" selected="true">RDS</option>
       <option value="tsv">TSV</option>