Mercurial > repos > ebi-gxa > salmon_kallisto_mtx_to_10x
changeset 1:a2aaefceb418 draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 3fbbd818012005da4513271beda50df98d3c1cde-dirty
| author | ebi-gxa |
|---|---|
| date | Fri, 08 Nov 2019 08:09:09 -0500 |
| parents | fe0fd27aba50 |
| children | 40f7a3d18cf4 |
| files | salmonKallistoMtxTo10x.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/salmonKallistoMtxTo10x.xml Thu Nov 07 05:12:10 2019 -0500 +++ b/salmonKallistoMtxTo10x.xml Fri Nov 08 08:09:09 2019 -0500 @@ -1,4 +1,4 @@ -<tool id="_salmon_kallisto_mtx_to_10x" name="salmonKallistoMtxTo10x" version="0.0.1+galaxy0"> +<tool id="_salmon_kallisto_mtx_to_10x" name="salmonKallistoMtxTo10x" version="0.0.1+galaxy1"> <description>Transforms .mtx matrix and associated labels into a format compatible with tools expecting old-style 10X data</description> <requirements> <requirement type="package">scipy</requirement> @@ -9,7 +9,7 @@ ]]></command> <inputs> - <param name="mtx_file" type="data" format="txt" label=".mtx-format matrix" /> + <param name="mtx_file" type="data" format="mtx" label=".mtx-format matrix" /> <param name="genes_file" type="data" format="txt" label="Tab-delimited genes file" /> <param name="barcodes_file" type="data" format="txt" label="Tab-delimited barcodes file" /> <param name="cell_prefix" type="text" optional='true' value="" label="Prefix to prepend to cell names / barcodes" help="This is useful when multiple matrices from different libraries with overlapping barcodes will be merged"/> @@ -18,7 +18,7 @@ <outputs> <data name="genes_out" format="txt" from_work_dir="genes.tsv" label="${tool.name} on ${on_string}: genes"/> <data name="barcodes_out" format="txt" from_work_dir="barcodes.tsv" label="${tool.name} on ${on_string}: barcodes"/> - <data name="matrix_out" format="txt" from_work_dir="matrix.mtx" label="${tool.name} on ${on_string}: matrix" /> + <data name="matrix_out" format="mtx" from_work_dir="matrix.mtx" label="${tool.name} on ${on_string}: matrix" /> </outputs> <help><![CDATA[