comparison scanpy-filter-cells.xml @ 28:bf1e0bdec1db draft default tip

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty

27:356fa6c27341

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@" >
  <description>based on counts and numbers of genes expressed</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

      <repeat name="parameters">
        <param name="name" value="n_counts"/>
        <param name="min" value="0"/>
        <param name="max" value="1e9"/>
      </repeat>
      <output name="output_h5" file="filter_cells.h5" ftype="h5" compare="sim_size"/>
    </test>
  </tests>

  <help><![CDATA[
===================================================================

28:bf1e0bdec1db

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@" >
  <description>based on counts and numbers of genes expressed</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

      <repeat name="parameters">
        <param name="name" value="n_counts"/>
        <param name="min" value="0"/>
        <param name="max" value="1e9"/>
      </repeat>
      <output name="output_h5" ftype="h5">
        <assert_contents>
          <has_h5_keys keys="obs/n_genes_by_counts"/>
        </assert_contents>
      </output>
    </test>
  </tests>

  <help><![CDATA[
===================================================================