Mercurial > repos > ebi-gxa > scanpy_filter_cells
diff scanpy-filter-cells.xml @ 28:bf1e0bdec1db draft default tip
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author | ebi-gxa |
---|---|
date | Tue, 27 Feb 2024 16:42:55 +0000 |
parents | 356fa6c27341 |
children |
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--- a/scanpy-filter-cells.xml Fri Oct 13 14:07:25 2023 +0000 +++ b/scanpy-filter-cells.xml Tue Feb 27 16:42:55 2024 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@" > +<tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@" > <description>based on counts and numbers of genes expressed</description> <macros> <import>scanpy_macros2.xml</import> @@ -88,7 +88,11 @@ <param name="min" value="0"/> <param name="max" value="1e9"/> </repeat> - <output name="output_h5" file="filter_cells.h5" ftype="h5" compare="sim_size"/> + <output name="output_h5" ftype="h5"> + <assert_contents> + <has_h5_keys keys="obs/n_genes_by_counts"/> + </assert_contents> + </output> </test> </tests>