Mercurial > repos > ebi-gxa > scanpy_filter_cells

diff scanpy-filter-cells.xml @ 7:9c65f1de489b draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003
author ebi-gxa
date Mon, 25 Nov 2019 14:41:57 -0500
parents 9024cf7a9a13
children 8d97bee137b5
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--- a/scanpy-filter-cells.xml	Wed Nov 20 06:36:04 2019 -0500
+++ b/scanpy-filter-cells.xml	Mon Nov 25 14:41:57 2019 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy3">
+<tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy6">
   <description>based on counts and numbers of genes expressed</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -59,7 +59,7 @@
   </inputs>
 
   <outputs>
-    <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: Filtered cells"/>
+    <expand macro="output_data_obj" description="Filtered cells"/>
     <expand macro="export_mtx_outputs"/>
   </outputs>