Mercurial > repos > ebi-gxa > scanpy_filter_cells

diff scanpy-filter-cells.xml @ 14:cf3fb754ddde draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 62f47287c7e8449c59a1f1f454852ddc669b1b1e-dirty"
author ebi-gxa
date Mon, 07 Sep 2020 14:03:18 +0000
parents 3dcc1629e420
children 7fd39eb52f38
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--- a/scanpy-filter-cells.xml	Fri Jun 05 08:56:09 2020 -0400
+++ b/scanpy-filter-cells.xml	Mon Sep 07 14:03:18 2020 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy10" profile="@PROFILE@" >
+<tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@" >
   <description>based on counts and numbers of genes expressed</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -79,14 +79,14 @@
       <repeat name="parameters">
         <param name="name" value="n_genes"/>
         <param name="min" value="200"/>
-        <param name="max" value="2500"/>
+        <param name="max" value="20000"/>
       </repeat>
       <repeat name="parameters">
         <param name="name" value="n_counts"/>
         <param name="min" value="0"/>
         <param name="max" value="1e9"/>
       </repeat>
-      <output name="output_h5" file="output.h5" ftype="h5" compare="sim_size"/>
+      <output name="output_h5" file="filter_cells.h5" ftype="h5" compare="sim_size"/>
     </test>
   </tests>