comparison scanpy-read-10x.xml @ 26:078aa23c9374 draft default tip

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty

25:af6ecb5adcc1

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_read_10x" name="Scanpy Read10x" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@">
  <description>into hdf5 object handled by scanpy</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

      <param name="matrix" value="matrix.mtx"/>
      <param name="genes" value="genes.tsv"/>
      <param name="barcodes" value="barcodes.tsv"/>
      <!-- <param name="cell_meta" value=""/> -->
      <param name="output_format" value="anndata"/>
      <output name="output_h5ad" file="read_10x.h5" ftype="h5" compare="sim_size"/>
    </test>
  </tests>

  <help><![CDATA[
=================================================================

26:078aa23c9374

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_read_10x" name="Scanpy Read10x" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
  <description>into hdf5 object handled by scanpy</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

      <param name="matrix" value="matrix.mtx"/>
      <param name="genes" value="genes.tsv"/>
      <param name="barcodes" value="barcodes.tsv"/>
      <!-- <param name="cell_meta" value=""/> -->
      <param name="output_format" value="anndata"/>
      <output name="output_h5ad" ftype="h5">
        <assert_contents>
          <has_h5_keys keys="var/gene_symbols"/>
        </assert_contents>
      </output>
    </test>
  </tests>

  <help><![CDATA[
=================================================================