Mercurial > repos > ebi-gxa > scanpy_read_10x

diff scanpy-read-10x.xml @ 26:078aa23c9374 draft default tip

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:43:19 +0000
parents af6ecb5adcc1
children
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--- a/scanpy-read-10x.xml	Fri Oct 13 14:08:36 2023 +0000
+++ b/scanpy-read-10x.xml	Tue Feb 27 16:43:19 2024 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_read_10x" name="Scanpy Read10x" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@">
+<tool id="scanpy_read_10x" name="Scanpy Read10x" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
   <description>into hdf5 object handled by scanpy</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -47,7 +47,11 @@
       <param name="barcodes" value="barcodes.tsv"/>
       <!-- <param name="cell_meta" value=""/> -->
       <param name="output_format" value="anndata"/>
-      <output name="output_h5ad" file="read_10x.h5" ftype="h5" compare="sim_size"/>
+      <output name="output_h5ad" ftype="h5">
+        <assert_contents>
+          <has_h5_keys keys="var/gene_symbols"/>
+        </assert_contents>
+      </output>
     </test>
   </tests>