comparison scanpy-run-umap.xml @ 5:6eb7a2e37adf draft

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003

4:3bd1152dd854

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_run_umap" name="Scanpy RunUMAP" version="@TOOL_VERSION@+galaxy1">
  <description>visualise cell clusters using UMAP</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

      </when>
    </conditional>
  </inputs>

  <outputs>
    <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: UMAP object"/>
    <data name="output_embed" format="csv" from_work_dir="embeddings.csv" label="${tool.name} on ${on_string}: UMAP embeddings">
      <filter>embeddings</filter>
    </data>
  </outputs>

5:6eb7a2e37adf

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_run_umap" name="Scanpy RunUMAP" version="@TOOL_VERSION@+galaxy6">
  <description>visualise cell clusters using UMAP</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

      </when>
    </conditional>
  </inputs>

  <outputs>
    <expand macro="output_data_obj" description="UMAP object"/>
    <data name="output_embed" format="csv" from_work_dir="embeddings.csv" label="${tool.name} on ${on_string}: UMAP embeddings">
      <filter>embeddings</filter>
    </data>
  </outputs>