Mercurial > repos > ebi-gxa > scanpy_run_umap

diff scanpy-run-umap.xml @ 5:6eb7a2e37adf draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003
author ebi-gxa
date Mon, 25 Nov 2019 14:38:52 -0500
parents 0ac2f9f2313b
children aa85725f43a2
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--- a/scanpy-run-umap.xml	Wed Nov 20 05:16:20 2019 -0500
+++ b/scanpy-run-umap.xml	Mon Nov 25 14:38:52 2019 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_run_umap" name="Scanpy RunUMAP" version="@TOOL_VERSION@+galaxy1">
+<tool id="scanpy_run_umap" name="Scanpy RunUMAP" version="@TOOL_VERSION@+galaxy6">
   <description>visualise cell clusters using UMAP</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -64,7 +64,7 @@
   </inputs>
 
   <outputs>
-    <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: UMAP object"/>
+    <expand macro="output_data_obj" description="UMAP object"/>
     <data name="output_embed" format="csv" from_work_dir="embeddings.csv" label="${tool.name} on ${on_string}: UMAP embeddings">
       <filter>embeddings</filter>
     </data>