comparison scanpy-scale-data.xml @ 26:4cc9362782b4 draft default tip

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty

25:bf30bd6355da

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_scale_data" name="Scanpy ScaleData" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@">
  <description>to make expression variance the same for all genes</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

      <param name="input_obj_file" value="find_variable_genes.h5"/>
      <param name="input_format" value="anndata"/>
      <param name="output_format" value="anndata"/>
      <param name="zero_center" value="true"/>
      <param name="scale_max" value="10"/>
      <output name="output_h5" file="scale_data.h5" ftype="h5" compare="sim_size"/>
    </test>
  </tests>

  <help><![CDATA[
    .. class:: infomark

26:4cc9362782b4

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_scale_data" name="Scanpy ScaleData" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
  <description>to make expression variance the same for all genes</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

      <param name="input_obj_file" value="find_variable_genes.h5"/>
      <param name="input_format" value="anndata"/>
      <param name="output_format" value="anndata"/>
      <param name="zero_center" value="true"/>
      <param name="scale_max" value="10"/>
      <output name="output_h5" ftype="h5">
        <assert_contents>
          <has_h5_keys keys="var/mean"/>
        </assert_contents>
      </output>
    </test>
  </tests>

  <help><![CDATA[
    .. class:: infomark