Mercurial > repos > ebi-gxa > scanpy_scale_data

diff scanpy-scale-data.xml @ 26:4cc9362782b4 draft default tip

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:43:09 +0000
parents bf30bd6355da
children
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--- a/scanpy-scale-data.xml	Fri Oct 13 14:09:07 2023 +0000
+++ b/scanpy-scale-data.xml	Tue Feb 27 16:43:09 2024 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_scale_data" name="Scanpy ScaleData" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@">
+<tool id="scanpy_scale_data" name="Scanpy ScaleData" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
   <description>to make expression variance the same for all genes</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -37,7 +37,11 @@
       <param name="output_format" value="anndata"/>
       <param name="zero_center" value="true"/>
       <param name="scale_max" value="10"/>
-      <output name="output_h5" file="scale_data.h5" ftype="h5" compare="sim_size"/>
+      <output name="output_h5" ftype="h5">
+        <assert_contents>
+          <has_h5_keys keys="var/mean"/>
+        </assert_contents>
+      </output>
     </test>
   </tests>