annotate scmap_macros.xml @ 1:17b3d7e04b3c draft

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit b9472e45f909300389b426955f4f563b8428ed07

<macros>
    <token name="@TOOL_VERSION@">1.6.0</token>
    <token name="@HELP@">More information can be found at https://bioconductor.org/packages/release/bioc/html/scmap.html</token>
    <xml name="requirements">
      <requirements>
        <requirement type="package">openblas</requirement>
        <requirement type="package">bioconductor-delayedarray</requirement>
        <requirement type="package" version="0.0.4">scmap-cli</requirement>
            <yield/>
      </requirements>
    </xml>
    <xml name="version">
      <version_command><![CDATA[
        echo $(R --version | grep version | grep -v GNU)", scmap version" $(R --vanilla --slave -e "library(scmap); cat(sessionInfo()\$otherPkgs\$scmap\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
    ]]></version_command>
    </xml>
    <token name="@VERSION_HISTORY@"><![CDATA[
**Version history**
1.6.0+galaxy0: Initial contribution. Jonathan Manning, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/.
    ]]></token>
    <xml name="citations">
      <citations>
        <citation type="bibtex">
          @Article{,
            title = {scmap - A tool for unsupervised projection of single cell RNA-seq data},
            author = {Vladimir Yu. Kiselev and Martin Hemberg},
            year = {2017},
            journal = {bioRxiv},
            url = {http://doi.org/10.1101/150292},
          }
        </citation>
        <citation type="bibtex">
          @misc{githubscmap-cli.git,
            author = {Jonathan Manning, EBI Gene Expression Team},
            year = {2018},
            title = {scmap-cli: command line interface for scmap},
            publisher = {GitHub},
            journal = {GitHub repository},
            url = {https://github.com/ebi-gene-expression-group/scmap-cli.git},
          }
        </citation>
        <yield />
      </citations>
    </xml>
</macros>