Mercurial > repos > ebi-gxa > scpred_predict_labels
comparison scpred_predict.xml @ 5:eca76dd511f4 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit bb88d0eb9c193518eb0d05321e3458a10212d3ab"
| author | ebi-gxa |
|---|---|
| date | Fri, 14 Aug 2020 10:47:23 -0400 |
| parents | fd06ab29487f |
| children | b869bb6d4b01 |
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| 4:fd06ab29487f | 5:eca76dd511f4 |
|---|---|
| 1 <tool id="scpred_predict_labels" name="Scpred predict" version="@TOOL_VERSION@+galaxy3"> | 1 <tool id="scpred_predict_labels" name="Scpred predict" version="@TOOL_VERSION@+galaxy0"> |
| 2 <description>Make cell type predictions using trained model.</description> | 2 <description>Make cell type predictions using trained model.</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>scpred_macros.xml</import> | 4 <import>scpred_macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 27 <param type="data" name="test_labels" optional="true" format="txt" label="Test labels" help="Path to the test labels file for evalutation of model performance in text format" /> | 27 <param type="data" name="test_labels" optional="true" format="txt" label="Test labels" help="Path to the test labels file for evalutation of model performance in text format" /> |
| 28 <param type="text" name="cell_types_column" value="cell_type2" optional="true" label="Cell types column name" help="Column name of true labels in provided metadata file" /> | 28 <param type="text" name="cell_types_column" value="cell_type2" optional="true" label="Cell types column name" help="Column name of true labels in provided metadata file" /> |
| 29 </inputs> | 29 </inputs> |
| 30 <outputs> | 30 <outputs> |
| 31 <data name="output_tbl_path" format="txt" /> | 31 <data name="output_tbl_path" format="txt" /> |
| 32 <data name="plot_path" format="txt" /> | 32 <data name="plot_path" format="png" /> |
| 33 <data name="confusion_table" format="txt" /> | 33 <data name="confusion_table" format="txt" /> |
| 34 </outputs> | 34 </outputs> |
| 35 <tests> | 35 <tests> |
| 36 <test> | 36 <test> |
| 37 <param name="input_object" value="scPred_trained.rds" /> | 37 <param name="input_object" value="scPred_trained.rds" /> |