Mercurial > repos > ebi-gxa > scpred_train_model
changeset 1:01493c9cdfa7 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"
| author | ebi-gxa |
|---|---|
| date | Fri, 24 Apr 2020 11:27:27 -0400 |
| parents | b17acf485397 |
| children | 46c2b1454118 |
| files | scpred_macros.xml scpred_train_model.xml |
| diffstat | 2 files changed, 7 insertions(+), 4 deletions(-) [+] |
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--- a/scpred_macros.xml Wed Apr 08 06:28:47 2020 -0400 +++ b/scpred_macros.xml Fri Apr 24 11:27:27 2020 -0400 @@ -4,7 +4,7 @@ <token name="@PROFILE@">18.01</token> <xml name="requirements"> <requirements> - <requirement type="package" version="0.0.5">scpred-cli</requirement> + <requirement type="package" version="0.0.7">scpred-cli</requirement> <yield/> </requirements> </xml> @@ -37,10 +37,9 @@ journal = {GitHub repository}, url = {https://github.com/ebi-gene-expression-group/scpred-cli.git}, } - </citation> + <citation type="doi">10.1101/2020.04.08.032698</citation> <yield /> </citations> </xml> </macros> -
--- a/scpred_train_model.xml Wed Apr 08 06:28:47 2020 -0400 +++ b/scpred_train_model.xml Fri Apr 24 11:27:27 2020 -0400 @@ -5,10 +5,14 @@ </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ - scpred_train_model.R --input-object "${input_object}" --model "${model}" --output-path "${output_obj_path}" --train-probs-plot "${train_probs_plot}" + scpred_train_model.R --input-object "${input_object}" --model "${model}" --output-path "${output_obj_path}" --train-probs-plot "${train_probs_plot}" + #if $train_id + --train-id '${train_id}' + #end if ]]></command> <inputs> <param type="data" name="input_object" label="Input SCE object" format="rdata" help="Input SCE object in .rds format"/> + <param type="text" name="train_id" label="Dataset ID" help="ID of the training dataset" /> <param type="text" name="model" label="Model type to train" value="svmRadial" help="Model type used for training. Must be one of the models supported by Caret package. Default: svmRadial" /> </inputs> <outputs>