comparison seurat_export_cellbrowser.xml @ 4:e7d338f8c4fc draft

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"

3:a18f8d34524a

cd output_html && tar -cf '$output' *;
]]></command>

    <inputs>
        <expand macro="input_object_params"/>
        <param name="markers_file" type="data" format="txt" label="Marker genes file from Seurat" />
    </inputs>

    <outputs>
        <data name="output" format="tar" label="${tool.name} on ${on_string}: UCSC CellBrowser bundle"/>
    </outputs>

    <tests>
        <test>
            <param name="rds_input" ftype="rdata" value="out_runtsne.rds"/>
            <param name="markers_file" ftype="txt" value="out_markers.csv"/>
            <output name="output" ftype="tar" value="out_cellbrowser_bundle.tar"/>
        </test>
    </tests>
    <help><![CDATA[
.. class:: infomark

4:e7d338f8c4fc

cd output_html && tar -cf '$output' *;
]]></command>

    <inputs>
        <expand macro="input_object_params"/>
        <param name="markers_file" type="data" optional="True" format="txt" label="Marker genes file from Seurat" />
    </inputs>

    <outputs>
        <data name="output" format="tar" label="${tool.name} on ${on_string}: UCSC CellBrowser bundle"/>
    </outputs>

    <tests>
        <test>
            <param name="rds_seurat_file" ftype="rdata" value="tsne_seurat.rds"/>
            <output name="output" value="html_out" compare="sim_size" delta="1000000"/>
        </test>
    </tests>
    <help><![CDATA[
.. class:: infomark