Mercurial > repos > ebi-gxa > seurat_export_cellbrowser
comparison seurat_export_cellbrowser.xml @ 4:e7d338f8c4fc draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
author | ebi-gxa |
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date | Fri, 27 Nov 2020 13:47:13 +0000 |
parents | 9e1c4d2d0776 |
children | 249392cd0d99 |
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3:a18f8d34524a | 4:e7d338f8c4fc |
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22 cd output_html && tar -cf '$output' *; | 22 cd output_html && tar -cf '$output' *; |
23 ]]></command> | 23 ]]></command> |
24 | 24 |
25 <inputs> | 25 <inputs> |
26 <expand macro="input_object_params"/> | 26 <expand macro="input_object_params"/> |
27 <param name="markers_file" type="data" format="txt" label="Marker genes file from Seurat" /> | 27 <param name="markers_file" type="data" optional="True" format="txt" label="Marker genes file from Seurat" /> |
28 </inputs> | 28 </inputs> |
29 | 29 |
30 <outputs> | 30 <outputs> |
31 <data name="output" format="tar" label="${tool.name} on ${on_string}: UCSC CellBrowser bundle"/> | 31 <data name="output" format="tar" label="${tool.name} on ${on_string}: UCSC CellBrowser bundle"/> |
32 </outputs> | 32 </outputs> |
33 | 33 |
34 <tests> | 34 <tests> |
35 <test> | 35 <test> |
36 <param name="rds_input" ftype="rdata" value="out_runtsne.rds"/> | 36 <param name="rds_seurat_file" ftype="rdata" value="tsne_seurat.rds"/> |
37 <param name="markers_file" ftype="txt" value="out_markers.csv"/> | 37 <output name="output" value="html_out" compare="sim_size" delta="1000000"/> |
38 <output name="output" ftype="tar" value="out_cellbrowser_bundle.tar"/> | |
39 </test> | 38 </test> |
40 </tests> | 39 </tests> |
41 <help><![CDATA[ | 40 <help><![CDATA[ |
42 .. class:: infomark | 41 .. class:: infomark |
43 | 42 |