Mercurial > repos > ebi-gxa > seurat_filter_cells
comparison seurat_filter_cells.xml @ 5:c4b984347138 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 355bb52d2e9d170b1db237e649657cc14e0a047a"
| author | ebi-gxa |
|---|---|
| date | Fri, 04 Mar 2022 07:25:34 +0000 |
| parents | ebf7286c8b97 |
| children |
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| 4:ebf7286c8b97 | 5:c4b984347138 |
|---|---|
| 1 <tool id="seurat_filter_cells" name="Seurat FilterCells" version="@SEURAT_VERSION@+galaxy0"> | 1 <tool id="seurat_filter_cells" name="Seurat FilterCells" profile="18.01" version="@SEURAT_VERSION@+galaxy0"> |
| 2 <description>filter cells in a Seurat object</description> | 2 <description>filter cells in a Seurat object</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>seurat_macros.xml</import> | 4 <import>seurat_macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 41 </outputs> | 41 </outputs> |
| 42 | 42 |
| 43 <tests> | 43 <tests> |
| 44 <test> | 44 <test> |
| 45 <param name="name" value="nCount_RNA" /> | 45 <param name="name" value="nCount_RNA" /> |
| 46 <param name="rds_seurat_file" ftype="rdata" value="raw_seurat.rds" /> | 46 <param name="rds_seurat_file" ftype="rdata" value="E-MTAB-6077-3k_features_90_cells.rds" /> |
| 47 <output name="rds_seurat_file" ftype="rdata" value="filtered_seurat.rds" compare="sim_size" delta="1000000" /> | 47 <output name="rds_seurat_file" ftype="rdata"> |
| 48 <assert_contents> | |
| 49 <has_size value="2260044" delta="200000"/> | |
| 50 </assert_contents> | |
| 51 </output> | |
| 48 </test> | 52 </test> |
| 49 </tests> | 53 </tests> |
| 50 <help><![CDATA[ | 54 <help><![CDATA[ |
| 51 .. class:: infomark | 55 .. class:: infomark |
| 52 | 56 |