Mercurial > repos > ebi-gxa > seurat_filter_cells

diff seurat_filter_cells.xml @ 5:c4b984347138 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 355bb52d2e9d170b1db237e649657cc14e0a047a"
author ebi-gxa
date Fri, 04 Mar 2022 07:25:34 +0000
parents ebf7286c8b97
children
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--- a/seurat_filter_cells.xml	Fri Nov 27 13:47:29 2020 +0000
+++ b/seurat_filter_cells.xml	Fri Mar 04 07:25:34 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="seurat_filter_cells" name="Seurat FilterCells" version="@SEURAT_VERSION@+galaxy0">
+<tool id="seurat_filter_cells" name="Seurat FilterCells" profile="18.01" version="@SEURAT_VERSION@+galaxy0">
     <description>filter cells in a Seurat object</description>
     <macros>
         <import>seurat_macros.xml</import>
@@ -43,8 +43,12 @@
     <tests>
         <test>
             <param name="name" value="nCount_RNA" />
-            <param name="rds_seurat_file" ftype="rdata" value="raw_seurat.rds" />
-            <output name="rds_seurat_file" ftype="rdata" value="filtered_seurat.rds" compare="sim_size" delta="1000000" />
+            <param name="rds_seurat_file" ftype="rdata" value="E-MTAB-6077-3k_features_90_cells.rds" />
+            <output name="rds_seurat_file" ftype="rdata">
+              <assert_contents>
+                <has_size value="2260044" delta="200000"/>
+              </assert_contents>
+            </output>
         </test>
     </tests>
     <help><![CDATA[