comparison seurat_find_neighbours.xml @ 4:99d628557c47 draft

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 355bb52d2e9d170b1db237e649657cc14e0a047a"

3:ab622ffd7c7f

<tool id="seurat_find_neighbours" name="Seurat FindNeighbours" version="@SEURAT_VERSION@+galaxy0">
    <description>constructs a Shared Nearest Neighbor (SNN) Graph</description>
    <macros>
        <import>seurat_macros.xml</import>
    </macros>
    <expand macro="requirements" />

        </data>
    </outputs>

    <tests>
        <test>
            <param name="rds_seurat_file" ftype="rdata" value="pca_seurat.rds"/>
            <param name="compute_snn" value="True" />
            <param name="reduction" value="pca" />
            <output name="rds_seurat_file" ftype="rdata" value="neighbours_seurat.rds" compare="sim_size" delta="10000000" />
        </test>
    </tests>
    <help><![CDATA[
.. class:: infomark

4:99d628557c47

<tool id="seurat_find_neighbours" name="Seurat FindNeighbours" profile="18.01" version="@SEURAT_VERSION@+galaxy0">
    <description>constructs a Shared Nearest Neighbor (SNN) Graph</description>
    <macros>
        <import>seurat_macros.xml</import>
    </macros>
    <expand macro="requirements" />

        </data>
    </outputs>

    <tests>
        <test>
            <param name="rds_seurat_file" ftype="rdata" value="E-MTAB-6077-3k_features_90_cells-pca.rds"/>
            <param name="compute_snn" value="True" />
            <param name="reduction" value="pca" />
            <output name="rds_seurat_file" ftype="rdata" >
              <assert_contents>
                <has_size value="5054400" delta="200000"/>
              </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[
.. class:: infomark