Mercurial > repos > ecology > iabiodiv_smartbiodiv_med_environ
comparison med_environ.py @ 1:b79faea33a8a draft
planemo upload for repository https://github.com/jeremyfix/medenv commit 56fa523a7852e06962a05a05224ca193c25e20bc
| author | ecology |
|---|---|
| date | Sat, 24 Feb 2024 18:12:18 +0000 |
| parents | f82f266381be |
| children |
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| 0:f82f266381be | 1:b79faea33a8a |
|---|---|
| 61 features = args.variables.split(",") | 61 features = args.variables.split(",") |
| 62 fetcher = medenv.Fetcher(features, reduction="mean") | 62 fetcher = medenv.Fetcher(features, reduction="mean") |
| 63 | 63 |
| 64 # Loads the input dataset | 64 # Loads the input dataset |
| 65 df = pd.read_csv(args.datafile, sep="\t") | 65 df = pd.read_csv(args.datafile, sep="\t") |
| 66 lat_key = df.columns[args.lat_key] | 66 lat_key = df.columns[args.lat_key - 1] |
| 67 long_key = df.columns[args.long_key] | 67 long_key = df.columns[args.long_key - 1] |
| 68 depth_key = df.columns[args.depth_key] | 68 depth_key = df.columns[args.depth_key - 1] |
| 69 date_key = df.columns[args.date_key] | 69 date_key = df.columns[args.date_key - 1] |
| 70 print(lat_key, long_key, depth_key, date_key) | |
| 71 | 70 |
| 72 df = df.apply( | 71 df = df.apply( |
| 73 environment_observation, | 72 environment_observation, |
| 74 args=( | 73 args=( |
| 75 fetcher, | 74 fetcher, |