Mercurial > repos > edward-kirton > hmmer

diff hmmpress.xml @ 0:c16d8db9338a

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author eskirton@lbl.gov
date Mon, 05 Mar 2012 22:43:09 -0800
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/hmmpress.xml	Mon Mar 05 22:43:09 2012 -0800
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+<tool id="hmmpress" name="hmmpress" version="1.0.0">
+<description>Compress profile db</description>
+<command interpreter="perl">hmmpress_wrapper.pl $infile $outfile $outfile.extra_files_path</command>
+<inputs>
+    <param name="infile" type="data" format="hmm" label="HMM profile Db" help="Created by hmmbuild" />
+</inputs>
+<outputs>
+    <data name="outfile" format="hmmpressed" />
+</outputs>
+<help>
+**What It Does**
+
+Starting from a profile database in standard HMMER3 format, construct binary compressed datafiles for hmmscan.
+
+The hmmpress step is required for hmmscan to work.
+</help>
+</tool>