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view hmmpress.xml @ 0:c16d8db9338a

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author eskirton@lbl.gov
date Mon, 05 Mar 2012 22:43:09 -0800
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<tool id="hmmpress" name="hmmpress" version="1.0.0">
<description>Compress profile db</description>
<command interpreter="perl">hmmpress_wrapper.pl $infile $outfile $outfile.extra_files_path</command>
<inputs>
    <param name="infile" type="data" format="hmm" label="HMM profile Db" help="Created by hmmbuild" />
</inputs>
<outputs>
    <data name="outfile" format="hmmpressed" />
</outputs>
<help>
**What It Does**

Starting from a profile database in standard HMMER3 format, construct binary compressed datafiles for hmmscan.

The hmmpress step is required for hmmscan to work.
</help>
</tool>