Mercurial > repos > fangly > grinder
changeset 9:577e77853e8b
Fixed a typo
| author | fangly |
|---|---|
| date | Thu, 03 Nov 2011 23:58:59 -0400 |
| parents | 43def9fa33b9 |
| children | c9fee6113b0d |
| files | grinder.xml |
| diffstat | 1 files changed, 3 insertions(+), 1 deletions(-) [+] |
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--- a/grinder.xml Thu Nov 03 23:44:09 2011 -0400 +++ b/grinder.xml Thu Nov 03 23:58:59 2011 -0400 @@ -410,6 +410,8 @@ Grinder is a program to create random shotgun and amplicon sequence libraries based on reference sequences in a FASTA file. Features include: + * omic support: genomic, metagenomic, transcriptomic, metatranscriptomic, + proteomic and metaproteomic * shotgun library or amplicon library * arbitrary read length distribution and number of reads * simulation of PCR and sequencing errors (chimeras, point mutations, homopolymers) @@ -426,7 +428,7 @@ A variety of FASTA databases containing genes or genomes can be used as input for Grinder, such as the NCBI RefSeq collection (ftp://ftp.ncbi.nih.gov/refseq/release/microbial/), -the GreenGenes 16S rRNA database (http://greengenes.lbl.gov/Download/Sequence_Data/Fasta_data_files/Isolated_named_strains_16S_aligned.fasta), theh uman genome and transcriptome (ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/RefSeqGene/, ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.rna.fna.gz), ... +the GreenGenes 16S rRNA database (http://greengenes.lbl.gov/Download/Sequence_Data/Fasta_data_files/Isolated_named_strains_16S_aligned.fasta), the human genome and transcriptome (ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/RefSeqGene/, ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.rna.fna.gz), ... These input files can either be provided as a Galaxy dataset, or can be uploaded by Galaxy users in their history.