Mercurial > repos > fubar > bbgbigwig_dev
changeset 3:3899b3091d4a draft
planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
| author | fubar |
|---|---|
| date | Fri, 14 Jun 2024 23:46:14 +0000 |
| parents | 460f523c8ff4 |
| children | 78e7461e8946 |
| files | bam_bed_gff_to_bigwig.xml test-data/dbkeys.loc.sample tool-data/testing.len tool_data_table_conf.xml.sample |
| diffstat | 4 files changed, 6 insertions(+), 32 deletions(-) [+] |
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--- a/bam_bed_gff_to_bigwig.xml Fri Jun 14 07:39:23 2024 +0000 +++ b/bam_bed_gff_to_bigwig.xml Fri Jun 14 23:46:14 2024 +0000 @@ -1,4 +1,7 @@ -<tool id="bbgtobigwig" name="Convert BAM BED GFF to BigWig" version="0.1" profile="22.05"> +<tool id="bbgtobigwig_dev" name="BAM BED GFF coverage bigWigs" version="0.1" profile="22.05"> + <xrefs> + <xref type="bio.tools">UCSC_Genome_Browser_Utilities</xref> + </xrefs> <requirements> <requirement type="package" version="455">ucsc-bedgraphtobigwig</requirement> <requirement type="package" version="2.31.1">bedtools</requirement>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/dbkeys.loc.sample Fri Jun 14 23:46:14 2024 +0000 @@ -0,0 +1,1 @@ +#<dbkey> <display_name> <len_file_path>
--- a/tool-data/testing.len Fri Jun 14 07:39:23 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,30 +0,0 @@ -dummy_chr 100000000 -chr1 1000000000 -X 1000000000 -16 1000000000 -ctgA 1000000000 -Merlin 10000000 -super_1 1000000000 -chr1 1000000000 -chr7 2000000000 -chrX 20000000000 -phiX174 100000000 -random_phiX_region_1 100000000 -random_phiX_region_2 100000000 -random_phiX_region_3 100000000 -random_phiX_region_4 100000000 -random_phiX_region_5 100000000 -random_phiX_region_6 100000000 -random_phiX_region_7 100000000 -random_phiX_region_8 100000000 -random_phiX_region_9 100000000 -random_phiX_region_10 100000000 -random_phiX_region_11 100000000 -random_phiX_region_12 100000000 -random_phiX_region_13 100000000 -random_phiX_region_14 100000000 -random_phiX_region_15 100000000 -random_phiX_region_16 100000000 -random_phiX_region_17 100000000 -random_phiX_region_18 100000000 -random_phiX_region_19 100000000