Mercurial > repos > fubar > jbrowse2
changeset 62:ab0d6782a95f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 2b6d4a24585beb1ba5055e5d34aacb3b299b1943-dirty
| author | fubar |
|---|---|
| date | Thu, 28 Mar 2024 04:51:06 +0000 |
| parents | e7a6f7a7148d |
| children | ac00dcfb5d1d |
| files | Galaxy-Workflow-_jb2testWF_mar26.ga __pycache__/jbrowse2.cpython-310.pyc autogenJB2.py jbrowse2.py jbrowse2.xml jbrowse2broken.py jbrowse2broken.xml macros.xml macrosbroken.xml test-data/blastxml/blast-gene1.xml test-data/blastxml/blast.xml test-data/blastxml/blastn-gene1.xml test-data/blastxml/merlin.gff test-data/bw/data.bw test-data/cram/merlin-sample.cram test-data/gff3/merlin.gff test-data/vcf/test.vcf test-data/xmfa.gff tool_data_table_conf.xml.test |
| diffstat | 19 files changed, 12426 insertions(+), 3650 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Galaxy-Workflow-_jb2testWF_mar26.ga Thu Mar 28 04:51:06 2024 +0000 @@ -0,0 +1,331 @@ +{ + "a_galaxy_workflow": "true", + "annotation": "", + "comments": [], + "format-version": "0.1", + "name": "'jb2testWF_mar26", + "steps": { + "0": { + "annotation": "", + "content_id": null, + "errors": null, + "id": 0, + "input_connections": {}, + "inputs": [ + { + "description": "", + "name": "Merlin" + } + ], + "label": "Merlin", + "name": "Input dataset", + "outputs": [], + "position": { + "left": 0, + "top": 0 + }, + "tool_id": null, + "tool_state": "{\"optional\": false, \"tag\": null}", + "tool_version": null, + "type": "data_input", + "uuid": "60c939a2-b9c9-47cd-9ef4-6415e87a1680", + "when": null, + "workflow_outputs": [] + }, + "1": { + "annotation": "", + "content_id": null, + "errors": null, + "id": 1, + "input_connections": {}, + "inputs": [ + { + "description": "", + "name": "merlin.bw" + } + ], + "label": "merlin.bw", + "name": "Input dataset", + "outputs": [], + "position": { + "left": 0, + "top": 102 + }, + "tool_id": null, + "tool_state": "{\"optional\": false, \"tag\": null}", + "tool_version": null, + "type": "data_input", + "uuid": "97251b21-c6c4-4ef9-b985-0cf90f1d2f75", + "when": null, + "workflow_outputs": [] + }, + "2": { + "annotation": "", + "content_id": null, + "errors": null, + "id": 2, + "input_connections": {}, + "inputs": [ + { + "description": "", + "name": "merlinlastz.maf" + } + ], + "label": "merlinlastz.maf", + "name": "Input dataset", + "outputs": [], + "position": { + "left": 0, + "top": 204 + }, + "tool_id": null, + "tool_state": "{\"optional\": false, \"tag\": null}", + "tool_version": null, + "type": "data_input", + "uuid": "41961b03-3ea3-4fe4-a45e-85e2f74b8a48", + "when": null, + "workflow_outputs": [] + }, + "3": { + "annotation": "", + "content_id": null, + "errors": null, + "id": 3, + "input_connections": {}, + "inputs": [ + { + "description": "", + "name": "merlinblast.xml" + } + ], + "label": "merlinblast.xml", + "name": "Input dataset", + "outputs": [], + "position": { + "left": 0, + "top": 327 + }, + "tool_id": null, + "tool_state": "{\"optional\": false, \"tag\": null}", + "tool_version": null, + "type": "data_input", + "uuid": "544106a0-44ea-40c9-8c55-ff5100110ae2", + "when": null, + "workflow_outputs": [] + }, + "4": { + "annotation": "", + "content_id": null, + "errors": null, + "id": 4, + "input_connections": {}, + "inputs": [ + { + "description": "", + "name": "merlin-sample.bam" + } + ], + "label": "merlin-sample.bam", + "name": "Input dataset", + "outputs": [], + "position": { + "left": 0, + "top": 450 + }, + "tool_id": null, + "tool_state": "{\"optional\": false, \"tag\": null}", + "tool_version": null, + "type": "data_input", + "uuid": "42903332-fc6b-4565-b289-22233e6f129a", + "when": null, + "workflow_outputs": [] + }, + "5": { + "annotation": "", + "content_id": null, + "errors": null, + "id": 5, + "input_connections": {}, + "inputs": [ + { + "description": "", + "name": "merlincram" + } + ], + "label": "merlincram", + "name": "Input dataset", + "outputs": [], + "position": { + "left": 0, + "top": 573 + }, + "tool_id": null, + "tool_state": "{\"optional\": false, \"tag\": null}", + "tool_version": null, + "type": "data_input", + "uuid": "54692cdf-d0f6-4631-bfbd-8d71e15003a0", + "when": null, + "workflow_outputs": [] + }, + "6": { + "annotation": "", + "content_id": null, + "errors": null, + "id": 6, + "input_connections": {}, + "inputs": [ + { + "description": "", + "name": "merlin.gff3" + } + ], + "label": "merlin.gff3", + "name": "Input dataset", + "outputs": [], + "position": { + "left": 0, + "top": 696 + }, + "tool_id": null, + "tool_state": "{\"optional\": false, \"tag\": null}", + "tool_version": null, + "type": "data_input", + "uuid": "a84e95f1-d702-4775-b9e7-abd641122be6", + "when": null, + "workflow_outputs": [] + }, + "7": { + "annotation": "", + "content_id": null, + "errors": null, + "id": 7, + "input_connections": {}, + "inputs": [ + { + "description": "", + "name": "test-6.bed" + } + ], + "label": "test-6.bed", + "name": "Input dataset", + "outputs": [], + "position": { + "left": 0, + "top": 798 + }, + "tool_id": null, + "tool_state": "{\"optional\": false, \"tag\": null}", + "tool_version": null, + "type": "data_input", + "uuid": "3306709f-18b5-47b1-86a5-dbf6415254e5", + "when": null, + "workflow_outputs": [] + }, + "8": { + "annotation": "", + "content_id": null, + "errors": null, + "id": 8, + "input_connections": {}, + "inputs": [ + { + "description": "", + "name": "merlin.vcf" + } + ], + "label": "merlin.vcf", + "name": "Input dataset", + "outputs": [], + "position": { + "left": 0, + "top": 900 + }, + "tool_id": null, + "tool_state": "{\"optional\": false, \"tag\": null}", + "tool_version": null, + "type": "data_input", + "uuid": "7f0efd91-8d58-443f-b514-2c9c53ca0074", + "when": null, + "workflow_outputs": [] + }, + "9": { + "annotation": "", + "content_id": "toolshed.g2.bx.psu.edu/repos/fubar/jbrowse2/jbrowse2/2.10.1+galaxy2_7", + "errors": null, + "id": 9, + "input_connections": { + "reference_genome|genome": { + "id": 0, + "output_name": "output" + }, + "track_groups_0|data_tracks_0|data_format|useuri|annotation": { + "id": 1, + "output_name": "output" + }, + "track_groups_0|data_tracks_1|data_format|useuri|annotation": { + "id": 2, + "output_name": "output" + }, + "track_groups_0|data_tracks_2|data_format|useuri|annotation": { + "id": 3, + "output_name": "output" + }, + "track_groups_1|data_tracks_0|data_format|useuri|annotation": { + "id": 4, + "output_name": "output" + }, + "track_groups_1|data_tracks_1|data_format|useuri|annotation": { + "id": 5, + "output_name": "output" + }, + "track_groups_2|data_tracks_0|data_format|useuri|annotation": { + "id": 6, + "output_name": "output" + }, + "track_groups_2|data_tracks_1|data_format|useuri|annotation": { + "id": 7, + "output_name": "output" + }, + "track_groups_2|data_tracks_2|data_format|useuri|annotation": { + "id": 8, + "output_name": "output" + } + }, + "inputs": [ + { + "description": "runtime parameter for tool jbrowse2", + "name": "reference_genome" + } + ], + "label": null, + "name": "jbrowse2", + "outputs": [ + { + "name": "output", + "type": "html" + } + ], + "position": { + "left": 310, + "top": 229 + }, + "post_job_actions": {}, + "tool_id": "toolshed.g2.bx.psu.edu/repos/fubar/jbrowse2/jbrowse2/2.10.1+galaxy2_7", + "tool_shed_repository": { + "changeset_revision": "81d535970196", + "name": "jbrowse2", + "owner": "fubar", + "tool_shed": "toolshed.g2.bx.psu.edu" + }, + "tool_state": "{\"__input_ext\": \"input\", \"__workflow_invocation_uuid__\": \"0275163beb0c11eeb2f5934cf82eac23\", \"chromInfo\": \"/mnt/galaxy/tool-data/shared/ucsc/chrom/?.len\", \"jbgen\": {\"ucol\": {\"formcoll\": \"form\", \"__current_case__\": 1}, \"zipOut\": false, \"defaultLocation\": \"\", \"session_name\": \"New session\", \"enableAnalytics\": false, \"primary_color\": \"#0d233f\", \"secondary_color\": \"#721e63\", \"tertiary_color\": \"#135560\", \"quaternary_color\": \"#ffb11d\", \"font_size\": \"10\"}, \"reference_genome\": {\"genome_type_select\": \"history\", \"__current_case__\": 1, \"genome\": {\"__class__\": \"ConnectedValue\"}}, \"track_groups\": [{\"__index__\": 0, \"category\": \"one\", \"data_tracks\": [{\"__index__\": 0, \"data_format\": {\"data_format_select\": \"bigwig\", \"__current_case__\": 7, \"useuri\": {\"insource\": \"history\", \"__current_case__\": 0, \"annotation\": {\"__class__\": \"ConnectedValue\"}}, \"track_visibility\": \"default_on\"}}, {\"__index__\": 1, \"data_format\": {\"data_format_select\": \"maf\", \"__current_case__\": 6, \"useuri\": {\"insource\": \"history\", \"__current_case__\": 0, \"annotation\": {\"__class__\": \"ConnectedValue\"}}, \"jbstyle\": {\"track_style\": {\"display\": \"LinearBasicDisplay\", \"__current_case__\": 1, \"show_labels\": false, \"show_descriptions\": false, \"display_mode\": \"normal\", \"max_height\": \"600\", \"label\": \"jexl:get(feature,'name') || get(feature,'id')\", \"description\": \"jexl:get(feature,'note') || get(feature,'description')\"}}, \"track_visibility\": \"default_on\"}}, {\"__index__\": 2, \"data_format\": {\"data_format_select\": \"blastxml\", \"__current_case__\": 0, \"useuri\": {\"insource\": \"history\", \"__current_case__\": 0, \"annotation\": {\"__class__\": \"ConnectedValue\"}}, \"blast_parent\": null, \"min_gap\": \"10\", \"is_protein\": false, \"jbstyle\": {\"track_style\": {\"display\": \"LinearBasicDisplay\", \"__current_case__\": 1, \"show_labels\": false, \"show_descriptions\": false, \"display_mode\": \"normal\", \"max_height\": \"600\", \"label\": \"jexl:get(feature,'name') || get(feature,'id')\", \"description\": \"jexl:get(feature,'note') || get(feature,'description')\"}}, \"track_visibility\": \"default_on\"}}]}, {\"__index__\": 1, \"category\": \"two\", \"data_tracks\": [{\"__index__\": 0, \"data_format\": {\"data_format_select\": \"bam\", \"__current_case__\": 3, \"useuri\": {\"insource\": \"history\", \"__current_case__\": 0, \"annotation\": {\"__class__\": \"ConnectedValue\"}}, \"track_visibility\": \"default_on\"}}, {\"__index__\": 1, \"data_format\": {\"data_format_select\": \"cram\", \"__current_case__\": 5, \"useuri\": {\"insource\": \"history\", \"__current_case__\": 0, \"annotation\": {\"__class__\": \"ConnectedValue\"}}, \"track_visibility\": \"default_on\"}}]}, {\"__index__\": 2, \"category\": \"three\", \"data_tracks\": [{\"__index__\": 0, \"data_format\": {\"data_format_select\": \"gff\", \"__current_case__\": 2, \"useuri\": {\"insource\": \"history\", \"__current_case__\": 0, \"annotation\": {\"__class__\": \"ConnectedValue\"}}, \"match_part\": {\"match_part_select\": \"false\", \"__current_case__\": 1}, \"jbstyle\": {\"track_style\": {\"display\": \"LinearBasicDisplay\", \"__current_case__\": 1, \"show_labels\": false, \"show_descriptions\": false, \"display_mode\": \"normal\", \"max_height\": \"600\", \"label\": \"jexl:get(feature,'name') || get(feature,'id')\", \"description\": \"jexl:get(feature,'note') || get(feature,'description')\"}}, \"track_visibility\": \"default_on\"}}, {\"__index__\": 1, \"data_format\": {\"data_format_select\": \"bed\", \"__current_case__\": 4, \"useuri\": {\"insource\": \"history\", \"__current_case__\": 0, \"annotation\": {\"__class__\": \"ConnectedValue\"}}, \"jbstyle\": {\"track_style\": {\"display\": \"LinearBasicDisplay\", \"__current_case__\": 1, \"show_labels\": false, \"show_descriptions\": false, \"display_mode\": \"normal\", \"max_height\": \"600\", \"label\": \"jexl:get(feature,'name') || get(feature,'id')\", \"description\": \"jexl:get(feature,'note') || get(feature,'description')\"}}, \"track_visibility\": \"default_on\"}}, {\"__index__\": 2, \"data_format\": {\"data_format_select\": \"vcf\", \"__current_case__\": 1, \"useuri\": {\"insource\": \"history\", \"__current_case__\": 0, \"annotation\": {\"__class__\": \"ConnectedValue\"}}, \"jbstyle\": {\"track_style\": {\"display\": \"LinearVariantDisplay\", \"__current_case__\": 0, \"show_labels\": false, \"show_descriptions\": false, \"display_mode\": \"normal\", \"max_height\": \"600\"}}, \"track_visibility\": \"default_on\"}}]}], \"uglyTestingHack\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_version": "2.10.1+galaxy2_7", + "type": "tool", + "uuid": "ab05b81c-a0a2-4dcc-b76a-e47b15ebcdb9", + "when": null, + "workflow_outputs": [] + } + }, + "tags": [], + "uuid": "ea921c36-b1bb-4d82-9d35-5965daa3d3b2", + "version": 1 +} \ No newline at end of file
--- a/autogenJB2.py Tue Mar 26 00:52:34 2024 +0000 +++ b/autogenJB2.py Thu Mar 28 04:51:06 2024 +0000 @@ -68,7 +68,8 @@ jc = jbC( outdir=args.outdir, jbrowse2path=args.jbrowse2path, - genomes=[ + ) + genomes=[ { "path": x, "label": genome_names[i], @@ -80,9 +81,8 @@ } for i, x in enumerate(genome_paths) ], - ) - - jc.process_genomes() + logging.warn("#!!! paths=%s, genomes=%s" % (genome_paths, genomes)) + assref_name = jc.process_genomes(genomes[0]) default_session_data = { "visibility": { "default_on": [], @@ -96,7 +96,7 @@ tnames = [x[2] for x in listtracks] texts = [x[1] for x in listtracks] for i, track in enumerate(listtracks): - track_conf = {"trackfiles": [], "category": "autogenerated"} + track_conf = {"trackfiles": [], "category": "autogenerated", "assemblyNames": assref_name} tpath, trext, trackname = track[:3] track_conf["dataset_id"] = trackname useuri = "no"
--- a/jbrowse2.py Tue Mar 26 00:52:34 2024 +0000 +++ b/jbrowse2.py Thu Mar 28 04:51:06 2024 +0000 @@ -1,4 +1,4 @@ - #!/usr/bin/env python +#!/usr/bin/env python import argparse import binascii @@ -15,15 +15,15 @@ import xml.etree.ElementTree as ET from collections import defaultdict -logging.basicConfig(level=logging.INFO) +logging.basicConfig(level=logging.DEBUG) log = logging.getLogger("jbrowse") JB2VER = "v2.10.3" # version pinned for cloning TODAY = datetime.datetime.now().strftime("%Y-%m-%d") +SELF_LOCATION = os.path.dirname(os.path.realpath(__file__)) GALAXY_INFRASTRUCTURE_URL = None - mapped_chars = { ">": "__gt__", "<": "__lt__", @@ -341,23 +341,23 @@ if node.findall("metadata"): for (key, value) in node.findall("metadata")[0].attrib.items(): metadata["metadata_%s" % key] = value - # Additional Mappings applied: - metadata[ - "dataset_edam_format" - ] = '<a target="_blank" href="http://edamontology.org/{0}">{1}</a>'.format( - metadata["dataset_edam_format"], metadata["dataset_file_ext"] - ) - metadata["history_user_email"] = '<a href="mailto:{0}">{0}</a>'.format( - metadata["history_user_email"] - ) - metadata["hist_name"] = metadata["history_display_name"] - metadata[ - "history_display_name" - ] = '<a target="_blank" href="{galaxy}/history/view/{encoded_hist_id}">{hist_name}</a>'.format( - galaxy=GALAXY_INFRASTRUCTURE_URL, - encoded_hist_id=metadata["history_id"], - hist_name=metadata["history_display_name"], - ) + # Additional Mappings applied: + metadata[ + "dataset_edam_format" + ] = '<a target="_blank" href="http://edamontology.org/{0}">{1}</a>'.format( + metadata["dataset_edam_format"], metadata["dataset_file_ext"] + ) + metadata["history_user_email"] = '<a href="mailto:{0}">{0}</a>'.format( + metadata["history_user_email"] + ) + metadata["hist_name"] = metadata["history_display_name"] + metadata[ + "history_display_name" + ] = '<a target="_blank" href="{galaxy}/history/view/{encoded_hist_id}">{hist_name}</a>'.format( + galaxy=GALAXY_INFRASTRUCTURE_URL, + encoded_hist_id=metadata.get("history_id", "not available"), + hist_name=metadata.get("history_display_name", "not available"), + ) if node.findall("tool"): for (key, value) in node.findall("tool")[0].attrib.items(): metadata["tool_%s" % key] = value @@ -373,33 +373,41 @@ class JbrowseConnector(object): - def __init__(self, outdir, jbrowse2path, genomes): + def __init__(self, outdir, jbrowse2path): + self.assemblies = [] # these require more than a few line diff. + self.assmeta = {} self.giURL = GALAXY_INFRASTRUCTURE_URL self.outdir = outdir + self.genome_firstcontig = None self.jbrowse2path = jbrowse2path os.makedirs(self.outdir, exist_ok=True) - self.genome_paths = genomes - self.genome_name = None self.genome_names = [] self.trackIdlist = [] - self.tracksToAdd = [] + self.tracksToAdd = {} self.config_json = {} self.config_json_file = os.path.join(outdir, "config.json") self.clone_jbrowse() - def subprocess_check_call(self, command, output=None): - if output: - log.debug("cd %s && %s > %s", self.outdir, " ".join(command), output) - subprocess.check_call(command, cwd=self.outdir, stdout=output) + def get_cwd(self, cwd): + if cwd: + return self.outdir else: - log.debug("cd %s && %s", self.outdir, " ".join(command)) - subprocess.check_call(command, cwd=self.outdir) + return subprocess.check_output(["pwd"]).decode("utf-8").strip() + # return None - def subprocess_popen(self, command): + def subprocess_check_call(self, command, output=None, cwd=True): + if output: + log.debug("cd %s && %s > %s", self.get_cwd(cwd), " ".join(command), output) + subprocess.check_call(command, cwd=self.get_cwd(cwd), stdout=output) + else: + log.debug("cd %s && %s", self.get_cwd(cwd), " ".join(command)) + subprocess.check_call(command, cwd=self.get_cwd(cwd)) + + def subprocess_popen(self, command, cwd=True): log.debug(command) p = subprocess.Popen( command, - cwd=self.outdir, + cwd=self.get_cwd(cwd), shell=True, stdin=subprocess.PIPE, stdout=subprocess.PIPE, @@ -444,72 +452,72 @@ } return wstyle - def process_genomes(self): - assemblies = [] + def process_genomes(self, genomes): + assembly = [] + assmeta = [] useuri = False - for i, genome_node in enumerate(self.genome_paths): - if genome_node["useuri"].strip().lower() == "yes": + genome_names = [] + for i, genome_node in enumerate(genomes): + this_genome = {} + if genome_node["useuri"] == "yes": useuri = True - genome_name = genome_node["meta"]["dataset_dname"].strip() + genome_name = genome_node["label"].strip() if len(genome_name.split()) > 1: genome_name = genome_name.split()[0] # spaces and cruft break scripts when substituted - if genome_name not in self.genome_names: + if genome_name not in genome_names: # pafs with shared references fapath = genome_node["path"] if not useuri: fapath = os.path.realpath(fapath) assem = self.make_assembly(fapath, genome_name, useuri) - assemblies.append(assem) - self.genome_names.append(genome_name) - if self.genome_name is None: - self.genome_name = ( - genome_name # first one for all tracks - ) - self.genome_sequence_adapter = assem["sequence"]["adapter"] - self.genome_firstcontig = None + assembly.append(assem) + if len(genome_names) == 0: + this_genome["genome_name"] = genome_name # first one for all tracks + genome_names.append(genome_name) + this_genome["genome_sequence_adapter"] = assem["sequence"][ + "adapter" + ] + this_genome["genome_firstcontig"] = None if not useuri: fl = open(fapath, "r").readline() fls = fl.strip().split(">") if len(fls) > 1: fl = fls[1] if len(fl.split()) > 1: - self.genome_firstcontig = fl.split()[0].strip() + this_genome["genome_firstcontig"] = fl.split()[ + 0 + ].strip() else: - self.genome_firstcontig = fl + this_genome["genome_firstcontig"] = fl else: try: fl = urllib.request.urlopen(fapath + ".fai").readline() except: fl = None if fl: # is first row of the text fai so the first contig name - self.genome_firstcontig = ( + this_genome["genome_firstcontig"] = ( fl.decode("utf8").strip().split()[0] ) - else: - self.genome_firstcontig = None + assmeta.append(this_genome) + self.assemblies += assembly + self.assmeta[genome_names[0]] = assmeta + self.tracksToAdd[genome_names[0]] = [] if self.config_json.get("assemblies", None): - self.config_json["assemblies"] += assemblies + self.config_json["assemblies"] += assembly else: - self.config_json["assemblies"] = assemblies + self.config_json["assemblies"] = assembly + self.genome_names += genome_names + return this_genome["genome_name"] def make_assembly(self, fapath, gname, useuri): if useuri: faname = fapath adapter = { "type": "BgzipFastaAdapter", - "fastaLocation": { - "uri": faname, - "locationType": "UriLocation" - }, - "faiLocation": { - "uri": faname + ".fai", - "locationType": "UriLocation" - }, - "gziLocation": { - "uri": faname + ".gzi", - "locationType": "UriLocation" - } + "fastaLocation": {"uri": faname, "locationType": "UriLocation"}, + "faiLocation": {"uri": faname + ".fai", "locationType": "UriLocation"}, + "gziLocation": {"uri": faname + ".gzi", "locationType": "UriLocation"}, } else: faname = gname + ".fa.gz" @@ -532,7 +540,7 @@ }, "gziLocation": { "uri": faname + ".gzi", - } + }, } trackDict = { @@ -551,7 +559,7 @@ "type": "LinearGCContentDisplay", "displayId": "%s-LinearGCContentDisplay" % gname, }, - ] + ], } return trackDict @@ -582,7 +590,7 @@ "jbrowse", "text-index", "--target", - os.path.join(self.outdir, "data"), + self.outdir, "--assemblies", self.genome_name, ] @@ -628,17 +636,14 @@ trackDict = { "type": "HicTrack", "trackId": tId, - "name": trackData["name"], - "assemblyNames": [self.genome_name], + "name": trackData["name"], + "assemblyNames": [trackData["assemblyNames"]], "category": [ categ, ], - "adapter": { - "type": "HicAdapter", - "hicLocation": { "uri": uri } - } + "adapter": {"type": "HicAdapter", "hicLocation": {"uri": uri}}, } - self.tracksToAdd.append(trackDict) + self.tracksToAdd[trackData["assemblyNames"]].append(trackDict) self.trackIdlist.append(tId) def add_maf(self, data, trackData): @@ -660,7 +665,7 @@ categ = trackData["category"] fname = "%s" % tId dest = "%s/%s" % (self.outdir, fname) - gname = self.genome_name + gname = trackData["assemblyNames"] cmd = [ "bash", @@ -671,13 +676,16 @@ dest, ] self.subprocess_check_call(cmd) - mafs = open(data,'r').readlines() - mafss = [x for x in mafs if (x.startswith('s\t') or x.startswith('s '))] + mafs = open(data, "r").readlines() + mafss = [x for x in mafs if (x.startswith("s\t") or x.startswith("s "))] samp = [x.split()[1] for x in mafss if len(x.split()) > 0] sampu = list(dict.fromkeys(samp)) - samples = [x.split('.')[0] for x in sampu] + samples = [x.split(".")[0] for x in sampu] samples.sort() - logging.warn("$$$$ cmd=%s, mafss=%s samp=%s samples=%s" % (' '.join(cmd), mafss, samp, samples)) + logging.warn( + "$$$$ cmd=%s, mafss=%s samp=%s samples=%s" + % (" ".join(cmd), mafss, samp, samples) + ) trackDict = { "type": "MafTrack", "trackId": tId, @@ -697,21 +705,18 @@ }, }, }, - "assemblyNames": [self.genome_name], + "assemblyNames": [trackData["assemblyNames"]], "displays": [ { "type": "LinearBasicDisplay", - "displayId": "%s-LinearBasicDisplay" % tId + "displayId": "%s-LinearBasicDisplay" % tId, }, - { - "type": "LinearArcDisplay", - "displayId": "%s-LinearArcDisplay" % tId - }, - ] + {"type": "LinearArcDisplay", "displayId": "%s-LinearArcDisplay" % tId}, + ], } style_json = self._prepare_track_style(trackDict) trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) + self.tracksToAdd[gname].append(trackDict) self.trackIdlist.append(tId) if self.config_json.get("plugins", None): self.config_json["plugins"].append(mafPlugin[0]) @@ -732,7 +737,7 @@ ] subprocess.check_call(cmd, cwd=self.outdir, stdout=gff3_unrebased) gff3_unrebased.close() - logging.warn("### blastxml to gff3 cmd = %s" % ' '.join(cmd)) + logging.warn("### blastxml to gff3 cmd = %s" % " ".join(cmd)) return gff3_unrebased.name def add_blastxml(self, data, trackData, blastOpts, **kwargs): @@ -744,7 +749,7 @@ cmd.append("--protein2dna") cmd.extend([os.path.realpath(blastOpts["parent"]), gff3]) subprocess.check_call(cmd, cwd=self.outdir, stdout=gff3_rebased) - logging.warn("### gff3rebase cmd = %s" % ' '.join(cmd)) + logging.warn("### gff3rebase cmd = %s" % " ".join(cmd)) gff3_rebased.close() # Replace original gff3 file shutil.copy(gff3_rebased.name, gff3) @@ -758,7 +763,7 @@ "type": "FeatureTrack", "trackId": tId, "name": trackData["name"], - "assemblyNames": [self.genome_name], + "assemblyNames": [trackData["assemblyNames"]], "category": [ categ, ], @@ -786,7 +791,7 @@ } style_json = self._prepare_track_style(trackDict) trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) + self.tracksToAdd[trackData["assemblyNames"]].append(trackDict) self.trackIdlist.append(tId) os.unlink(gff3) @@ -810,9 +815,7 @@ "category": [ categ, ], - "assemblyNames": [ - self.genome_name, - ], + "assemblyNames": [trackData["assemblyNames"]], "adapter": { "type": "BigWigAdapter", "bigWigLocation": bwloc, @@ -826,7 +829,7 @@ } style_json = self._prepare_track_style(trackDict) trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) + self.tracksToAdd[trackData["assemblyNames"]].append(trackDict) self.trackIdlist.append(tId) def add_bam(self, data, trackData, bam_index=None, **kwargs): @@ -862,7 +865,7 @@ "category": [ categ, ], - "assemblyNames": [self.genome_name], + "assemblyNames": [trackData["assemblyNames"]], "adapter": { "type": "BamAdapter", "bamLocation": {"uri": url}, @@ -881,13 +884,19 @@ } style_json = self._prepare_track_style(trackDict) trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) + self.tracksToAdd[trackData["assemblyNames"]].append(trackDict) self.trackIdlist.append(tId) def add_cram(self, data, trackData, cram_index=None, **kwargs): tId = trackData["label"] categ = trackData["category"] useuri = trackData["useuri"].lower() == "yes" + gsa = self.assmeta.get(trackData["assemblyNames"], None) + if gsa: + genseqad = gsa[0]["genome_sequence_adapter"] + else: + genseqad = "Not found" + logging.warn("No adapter found for cram %s in gsa=%s" % (tId, gsa)) if useuri: url = data else: @@ -913,14 +922,14 @@ "category": [ categ, ], - "assemblyNames": [self.genome_name], + "assemblyNames": [trackData["assemblyNames"]], "adapter": { "type": "CramAdapter", "cramLocation": {"uri": url}, "craiLocation": { "uri": url + ".crai", }, - "sequenceAdapter": self.genome_sequence_adapter, + "sequenceAdapter": genseqad, }, "displays": [ { @@ -931,7 +940,7 @@ } style_json = self._prepare_track_style(trackDict) trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) + self.tracksToAdd[trackData["assemblyNames"]].append(trackDict) self.trackIdlist.append(tId) def add_vcf(self, data, trackData): @@ -955,7 +964,7 @@ "type": "VariantTrack", "trackId": tId, "name": trackData["name"], - "assemblyNames": [self.genome_name], + "assemblyNames": [trackData["assemblyNames"]], "category": [ categ, ], @@ -985,7 +994,7 @@ } style_json = self._prepare_track_style(trackDict) trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) + self.tracksToAdd[trackData["assemblyNames"]].append(trackDict) self.trackIdlist.append(tId) def _sort_gff(self, data, dest): @@ -1020,7 +1029,7 @@ "type": "FeatureTrack", "trackId": tId, "name": trackData["name"], - "assemblyNames": [self.genome_name], + "assemblyNames": [trackData["assemblyNames"]], "category": [ categ, ], @@ -1048,7 +1057,7 @@ } style_json = self._prepare_track_style(trackDict) trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) + self.tracksToAdd[trackData["assemblyNames"]].append(trackDict) self.trackIdlist.append(tId) def add_bed(self, data, ext, trackData): @@ -1065,7 +1074,7 @@ "type": "FeatureTrack", "trackId": tId, "name": trackData["name"], - "assemblyNames": [self.genome_name], + "assemblyNames": [trackData["assemblyNames"]], "adapter": { "category": [ categ, @@ -1097,17 +1106,24 @@ } style_json = self._prepare_track_style(trackDict) trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) + self.tracksToAdd[trackData["assemblyNames"]].append(trackDict) self.trackIdlist.append(tId) def add_paf(self, data, trackData, pafOpts, **kwargs): tname = trackData["name"] tId = trackData["label"] categ = trackData["category"] - pgnames = [x.strip() for x in pafOpts["genome_label"].split(",") if len(x.strip()) > 0] - pgpaths = [x.strip() for x in pafOpts["genome"].split(",") if len(x.strip()) > 0] - passnames = [self.genome_name] # always first - logging.debug("### add_paf got pafOpts=%s, pgnames=%s, pgpaths=%s for %s" % (pafOpts, pgnames, pgpaths, tId)) + pgnames = [ + x.strip() for x in pafOpts["genome_label"].split(",") if len(x.strip()) > 0 + ] + pgpaths = [ + x.strip() for x in pafOpts["genome"].split(",") if len(x.strip()) > 0 + ] + passnames = [trackData["assemblyNames"]] # always first + logging.debug( + "### add_paf got pafOpts=%s, pgnames=%s, pgpaths=%s for %s" + % (pafOpts, pgnames, pgpaths, tId) + ) for i, gname in enumerate(pgnames): if len(gname.split()) > 1: gname = gname.split()[0] @@ -1141,17 +1157,18 @@ "type": "PAFAdapter", "pafLocation": {"uri": url}, "assemblyNames": passnames, - } + }, } style_json = { - "displays": [ - { "type": "LinearBasicDisplay", - "displayId": "%s-LinearBasicyDisplay" % trackDict["trackId"] - } + "displays": [ + { + "type": "LinearBasicDisplay", + "displayId": "%s-LinearBasicyDisplay" % trackDict["trackId"], + } ] } trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) + self.tracksToAdd[trackData["assemblyNames"]].append(trackDict) self.trackIdlist.append(tId) def process_annotations(self, track): @@ -1173,6 +1190,7 @@ "style": {}, } + outputTrackConfig["assemblyNames"] = track["assemblyNames"] outputTrackConfig["key"] = track_human_label outputTrackConfig["useuri"] = useuri outputTrackConfig["path"] = dataset_path @@ -1271,88 +1289,92 @@ .add_default_view() and other configuration code adapted from https://github.com/abretaud/tools-iuc/blob/jbrowse2/tools/jbrowse2/jbrowse2.py """ - tracks_data = [] # TODO using the default session for now, but check out session specs in the future https://github.com/GMOD/jbrowse-components/issues/2708 track_types = {} with open(self.config_json_file, "r") as config_file: config_json = json.load(config_file) if self.config_json: config_json.update(self.config_json) - for track_conf in self.tracksToAdd: - tId = track_conf["trackId"] - track_types[tId] = track_conf["type"] - style_data = default_data["style"].get(tId, None) - if not style_data: - logging.warn("### No style data in default data %s for %s" % (default_data, tId)) - style_data = {"type": "LinearBasicDisplay"} - if "displays" in track_conf: - disp = track_conf["displays"][0]["type"] - style_data["type"] = disp - if track_conf.get("style_labels", None): - # TODO fix this: it should probably go in a renderer block (SvgFeatureRenderer) but still does not work - # TODO move this to per track displays? - style_data["labels"] = track_conf["style_labels"] - tracks_data.append( - { - "type": track_types[tId], - "configuration": tId, - "displays": [style_data], - } - ) - # The view for the assembly we're adding - view_json = {"type": "LinearGenomeView", "tracks": tracks_data} - refName = None - drdict = { - "reversed": False, - "assemblyName": self.genome_name, - "start": 1, - "end": 100000, - "refName": "x", - } + if "defaultSession" in config_json: + session_json = config_json["defaultSession"] + else: + session_json = {} + session_views = [] + for gnome in self.genome_names: + tracks_data = [] + for track_conf in self.tracksToAdd[gnome]: + tId = track_conf["trackId"] + track_types[tId] = track_conf["type"] + style_data = default_data["style"].get(tId, None) + if not style_data: + logging.warn( + "### No style data in default data %s for %s" + % (default_data, tId) + ) + style_data = {"type": "LinearBasicDisplay"} + if "displays" in track_conf: + disp = track_conf["displays"][0]["type"] + style_data["type"] = disp + if track_conf.get("style_labels", None): + # TODO fix this: it should probably go in a renderer block (SvgFeatureRenderer) but still does not work + # TODO move this to per track displays? + style_data["labels"] = track_conf["style_labels"] + tracks_data.append( + { + "type": track_types[tId], + "configuration": tId, + "displays": [style_data], + } + ) + # The view for the assembly we're adding + view_json = {"type": "LinearGenomeView", "tracks": tracks_data} + refName = None + drdict = { + "reversed": False, + "assemblyName": gnome, + "start": 1, + "end": 100000, + "refName": "x", + } - if default_data.get("defaultLocation", ""): - ddl = default_data["defaultLocation"] - loc_match = re.search(r"^([^:]+):([\d,]*)\.*([\d,]*)$", ddl) - # allow commas like 100,000 but ignore as integer - if loc_match: - refName = loc_match.group(1) - drdict["refName"] = refName - if loc_match.group(2) > "": - drdict["start"] = int(loc_match.group(2).replace(",", "")) - if loc_match.group(3) > "": - drdict["end"] = int(loc_match.group(3).replace(",", "")) + if default_data.get("defaultLocation", ""): + ddl = default_data["defaultLocation"] + loc_match = re.search(r"^([^:]+):([\d,]*)\.*([\d,]*)$", ddl) + # allow commas like 100,000 but ignore as integer + if loc_match: + refName = loc_match.group(1) + drdict["refName"] = refName + if loc_match.group(2) > "": + drdict["start"] = int(loc_match.group(2).replace(",", "")) + if loc_match.group(3) > "": + drdict["end"] = int(loc_match.group(3).replace(",", "")) + else: + logging.info( + "@@@ regexp could not match contig:start..end in the supplied location %s - please fix" + % ddl + ) + else: + drdict["refName"] = gnome + if drdict.get("refName", None): + # TODO displayedRegions is not just zooming to the region, it hides the rest of the chromosome + view_json["displayedRegions"] = [ + drdict, + ] + logging.info("@@@ defaultlocation %s for default session" % drdict) else: logging.info( - "@@@ regexp could not match contig:start..end in the supplied location %s - please fix" - % ddl + "@@@ no contig name found for default session - please add one!" ) - else: - drdict["refName"] = self.genome_firstcontig - if drdict.get("refName", None): - # TODO displayedRegions is not just zooming to the region, it hides the rest of the chromosome - view_json["displayedRegions"] = [ - drdict, - ] - - logging.info("@@@ defaultlocation %s for default session" % drdict) - else: - logging.info( - "@@@ no contig name found for default session - please add one!" - ) + session_views.append(view_json) session_name = default_data.get("session_name", "New session") for key, value in mapped_chars.items(): session_name = session_name.replace(value, key) - # Merge with possibly existing defaultSession (if upgrading a jbrowse instance) - session_json = {} - if "defaultSession" in config_json: - session_json = config_json["defaultSession"] - session_json["name"] = session_name if "views" not in session_json: - session_json["views"] = [] - - session_json["views"].append(view_json) + session_json["views"] = session_views + else: + session_json["views"] += session_views config_json["defaultSession"] = session_json self.config_json.update(config_json) @@ -1419,8 +1441,8 @@ def parse_style_conf(item): - if item.text.lower() in ['false','true','yes','no']: - return item.text.lower in ("yes", "true") + if item.text.lower() in ["false", "true", "yes", "no"]: + return item.text.lower in ("yes", "true") else: return item.text @@ -1432,7 +1454,7 @@ "--jbrowse2path", help="Path to JBrowse2 directory in biocontainer or Conda" ) parser.add_argument("--outdir", help="Output directory", default="out") - parser.add_argument("--version", "-V", action="version", version="%(prog)s 2.0.1") + parser.add_argument("--version", "-V", action="version", version=JB2VER) args = parser.parse_args() tree = ET.parse(args.xml) root = tree.getroot() @@ -1444,20 +1466,8 @@ # so we'll prepend `http://` and hope for the best. Requests *should* # be GET and not POST so it should redirect OK GALAXY_INFRASTRUCTURE_URL = "http://" + GALAXY_INFRASTRUCTURE_URL - jc = JbrowseConnector( - outdir=args.outdir, - jbrowse2path=args.jbrowse2path, - genomes=[ - { - "path": x.attrib["path"], - "label": x.attrib["label"], - "useuri": x.attrib["useuri"], - "meta": metadata_from_node(x.find("metadata")), - } - for x in root.findall("metadata/genomes/genome") - ], - ) - jc.process_genomes() + + jc = JbrowseConnector(outdir=args.outdir, jbrowse2path=args.jbrowse2path) default_session_data = { "visibility": { @@ -1468,92 +1478,110 @@ "style_labels": {}, } - for track in root.findall("tracks/track"): - track_conf = {} - track_conf["trackfiles"] = [] + for ass in root.findall("assembly"): + genomes = [ + { + "path": x.attrib["path"], + "label": x.attrib["label"], + "useuri": x.attrib["useuri"], + "meta": metadata_from_node(x.find("metadata")), + } + for x in ass.findall("metadata/genomes/genome") + ] + logging.warn("#!!! genomes=%s" % genomes) + assref_name = jc.process_genomes(genomes) + + for track in ass.find("tracks"): + track_conf = {} + track_conf["trackfiles"] = [] + track_conf["assemblyNames"] = assref_name + is_multi_bigwig = False + try: + if track.find("options/wiggle/multibigwig") and ( + track.find("options/wiggle/multibigwig").text == "True" + ): + is_multi_bigwig = True + multi_bigwig_paths = [] + except KeyError: + pass - is_multi_bigwig = False - try: - if track.find("options/wiggle/multibigwig") and ( - track.find("options/wiggle/multibigwig").text == "True" - ): - is_multi_bigwig = True - multi_bigwig_paths = [] - except KeyError: - pass + trackfiles = track.findall("files/trackFile") + if trackfiles: + for x in track.findall("files/trackFile"): + track_conf["label"] = x.attrib["label"] + trackkey = track_conf["label"] + track_conf["useuri"] = x.attrib["useuri"] + if is_multi_bigwig: + multi_bigwig_paths.append( + ( + x.attrib["label"], + x.attrib["useuri"], + os.path.realpath(x.attrib["path"]), + ) + ) + else: + if trackfiles: + metadata = metadata_from_node(x.find("metadata")) + track_conf["dataset_id"] = metadata.get( + "dataset_id", "None" + ) + if x.attrib["useuri"].lower() == "yes": + tfa = ( + x.attrib["path"], + x.attrib["ext"], + x.attrib["useuri"], + x.attrib["label"], + metadata, + ) + else: + tfa = ( + os.path.realpath(x.attrib["path"]), + x.attrib["ext"], + x.attrib["useuri"], + x.attrib["label"], + metadata, + ) + track_conf["trackfiles"].append(tfa) - trackfiles = track.findall("files/trackFile") - if trackfiles: - for x in track.findall("files/trackFile"): - track_conf["label"] = x.attrib["label"] - trackkey = track_conf["label"] - track_conf["useuri"] = x.attrib["useuri"] if is_multi_bigwig: - multi_bigwig_paths.append( + metadata = metadata_from_node(x.find("metadata")) + + track_conf["trackfiles"].append( ( - x.attrib["label"], - x.attrib["useuri"], - os.path.realpath(x.attrib["path"]), + multi_bigwig_paths, # Passing an array of paths to represent as one track + "bigwig_multiple", + "MultiBigWig", # Giving an hardcoded name for now + {}, # No metadata for multiple bigwig ) ) - else: - if trackfiles: - metadata = metadata_from_node(x.find("metadata")) - track_conf["dataset_id"] = metadata["dataset_id"] - if x.attrib["useuri"].lower() == "yes": - tfa = ( - x.attrib["path"], - x.attrib["ext"], - x.attrib["useuri"], - x.attrib["label"], - metadata, - ) - else: - tfa = ( - os.path.realpath(x.attrib["path"]), - x.attrib["ext"], - x.attrib["useuri"], - x.attrib["label"], - metadata, - ) - track_conf["trackfiles"].append(tfa) - if is_multi_bigwig: - metadata = metadata_from_node(x.find("metadata")) + track_conf["category"] = track.attrib["cat"] + track_conf["format"] = track.attrib["format"] + track_conf["conf"] = etree_to_dict(track.find("options")) + track_conf["category"] = track.attrib["cat"] + track_conf["format"] = track.attrib["format"] + keys = jc.process_annotations(track_conf) - track_conf["trackfiles"].append( - ( - multi_bigwig_paths, # Passing an array of paths to represent as one track - "bigwig_multiple", - "MultiBigWig", # Giving an hardcoded name for now - {}, # No metadata for multiple bigwig - ) - ) - track_conf["category"] = track.attrib["cat"] - track_conf["format"] = track.attrib["format"] - track_conf["conf"] = etree_to_dict(track.find("options")) - track_conf["category"] = track.attrib["cat"] - track_conf["format"] = track.attrib["format"] - keys = jc.process_annotations(track_conf) + if keys: + for key in keys: + vis = track.attrib.get("visibility", "default_off") + if not vis: + vis = "default_off" + default_session_data["visibility"][vis].append(key) + if track.find("options/style"): + default_session_data["style"][key] = { + item.tag: parse_style_conf(item) + for item in track.find("options/style") + } + else: + default_session_data["style"][key] = {} + logging.warn("@@@@ no options/style found for %s" % (key)) - if keys: - for key in keys: - default_session_data["visibility"][ - track.attrib.get("visibility", "default_off") - ].append(key) - if track.find("options/style"): - default_session_data["style"][key] = { - item.tag: parse_style_conf(item) for item in track.find("options/style") - } - else: - default_session_data["style"][key] = {} - logging.warn("@@@@ no options/style found for %s" % (key)) - - if track.find("options/style_labels"): - default_session_data["style_labels"][key] = { - item.tag: parse_style_conf(item) - for item in track.find("options/style_labels") - } + if track.find("options/style_labels"): + default_session_data["style_labels"][key] = { + item.tag: parse_style_conf(item) + for item in track.find("options/style_labels") + } default_session_data["defaultLocation"] = root.find( "metadata/general/defaultLocation" ).text @@ -1571,11 +1599,10 @@ "font_size": root.find("metadata/general/font_size").text, } jc.add_general_configuration(general_data) - trackconf = jc.config_json.get("tracks", None) - if trackconf: - jc.config_json["tracks"].update(jc.tracksToAdd) - else: - jc.config_json["tracks"] = jc.tracksToAdd + trackconf = jc.config_json.get("tracks", []) + for gnome in jc.genome_names: + trackconf += jc.tracksToAdd[gnome] + jc.config_json["tracks"] = trackconf jc.write_config() jc.add_default_session(default_session_data) # jc.text_index() not sure what broke here.
--- a/jbrowse2.xml Tue Mar 26 00:52:34 2024 +0000 +++ b/jbrowse2.xml Thu Mar 28 04:51:06 2024 +0000 @@ -1,4 +1,4 @@ - <tool id="jbrowse2" name="jbrowse2" version="@TOOL_VERSION@+@WRAPPER_VERSION@_7" profile="22.05"> + <tool id="jbrowse2auto" name="JBrowse2auto" version="@TOOL_VERSION@+@WRAPPER_VERSION@_8" profile="22.05"> <description>genome browser</description> <macros> <import>macros.xml</import> @@ -62,62 +62,8 @@ ]]></command> <configfiles> <configfile name="trackxml"><![CDATA[<?xml version="1.0"?> -#if $jbgen.ucol.formcoll=="form": <root> <metadata> - <genomes> - #if str($reference_genome.genome_type_select) == "uri": - <genome path="${reference_genome.uri}" label="${reference_genome.refname}" useuri="yes"> - <metadata> - <dataset - dname = "${reference_genome.refname}" /> - </metadata> - </genome> - #else if str($reference_genome.genome_type_select) == "indexed": - <genome path="${reference_genome.genome.fields.path}" label="${reference_genome.genome.fields.name}" useuri="no"> - <metadata> - <dataset - dname = "${reference_genome.genome.fields.name}" /> - </metadata> - </genome> - #else - <genome path="$reference_genome.genome" label="${reference_genome.genome.name}" useuri="no"> - <metadata> - <dataset id="${__app__.security.encode_id($reference_genome.genome.id)}" hid="${reference_genome.genome.hid}" - size="${reference_genome.genome.get_size(nice_size=True)}" - edam_format="${reference_genome.genome.datatype.edam_format}" - file_ext="${reference_genome.genome.ext}" - dname = "${reference_genome.genome.name}" /> - <history id="${__app__.security.encode_id($reference_genome.genome.history_id)}" - #if $reference_genome.genome.history.user: - user_email="${reference_genome.genome.history.user.email}" - user_id="${reference_genome.genome.history.user_id}" - display_name="${reference_genome.genome.history.get_display_name()}"/> - #else - user_email="anonymous" - user_id="-1" - display_name="Unnamed History"/> - #end if - <metadata - #for (key, value) in $reference_genome.genome.get_metadata().items(): - #if "_types" not in $key: - #if isinstance($value, list): - #set value_str = "[%s]" % ','.join([str(val) for val in value]) - ${key}="$value_str" - #else - ${key}="${value}" - #end if - #end if - #end for - /> - <tool - tool_id="${reference_genome.genome.creating_job.tool_id}" - tool_version="${reference_genome.genome.creating_job.tool_version}" - /> - </metadata> - </genome> - #end if - </genomes> <general> <defaultLocation>${jbgen.defaultLocation}</defaultLocation> <zipOut>${jbgen.zipOut}</zipOut> @@ -131,8 +77,73 @@ </general> <galaxyUrl>${__app__.config.galaxy_infrastructure_url}</galaxyUrl> </metadata> +#if $jbgen.ucol.formcoll=="form": + #for $assembly in $assemblies: + <assembly> + <metadata> + <genomes> + #if str($assembly.reference_genome.genome_type_select) == "uri": + <genome path="${assembly.reference_genome.uri}" label="${assembly.reference_genome.refname}" useuri="yes"> + <metadata> + <dataset + dname = "${assembly.reference_genome.refname}" /> + </metadata> + </genome> + #else if str($assembly.reference_genome.genome_type_select) == "indexed": + <genome path="${assembly.reference_genome.genome.fields.path}" label="${assembly.reference_genome.genome.fields.name}" useuri="no"> + <metadata> + <dataset + dname = "${assembly.reference_genome.genome.fields.name}" /> + </metadata> + </genome> + #else + <genome path="$assembly.reference_genome.genome" label="${assembly.reference_genome.genome.name}" useuri="no"> + <metadata> + #if $uglyTestingHack != "enabled": + <dataset id="${__app__.security.encode_id($assembly.reference_genome.genome.id)}" + hid="${assembly.reference_genome.genome.hid}" + size="${assembly.reference_genome.genome.get_size(nice_size=True)}" + edam_format="${assembly.reference_genome.genome.datatype.edam_format}" + file_ext="${assembly.reference_genome.genome.ext}" + dname = "${assembly.reference_genome.genome.name}" + /> + <history + #if $assembly.reference_genome.genome.history.user: + user_email="${assembly.reference_genome.genome.history.user.email}" + user_id="${assembly.reference_genome.genome.history.user_id}" + display_name="${assembly.reference_genome.genome.history.get_display_name()}"/> + #else + user_email="anonymous" + user_id="-1" + display_name="Unnamed History" + #end if + id="${__app__.security.encode_id($assembly.reference_genome.genome.history_id)}" + /> + <metadata + #for (key, value) in $assembly.reference_genome.genome.get_metadata().items(): + #if "_types" not in $key: + #if isinstance($value, list): + #set value_str = "[%s]" % ','.join([str(val) for val in value]) + ${key}="$value_str" + #else + ${key}="${value}" + #end if + #end if + #end for + /> + <tool + tool_id="${assembly.reference_genome.genome.creating_job.tool_id}" + tool_version="${assembly.reference_genome.genome.creating_job.tool_version}" + /> + #end if + </metadata> + </genome> + #end if + </genomes> + + </metadata> <tracks> - #for $tg in $track_groups: + #for $tg in $assembly.track_groups: #for $track in $tg.data_tracks: #if $track.data_format.useuri.insource == "uri": <track cat="${tg.category}" format="${track.data_format.data_format_select}" visibility="${track.data_format.track_visibility}"> @@ -151,6 +162,7 @@ #for $dataset in $track.data_format.useuri.annotation: <trackFile path="${dataset}" ext="${dataset.ext}" label="${dataset.name}" useuri="no"> <metadata> + #if $uglyTestingHack != "enabled": <dataset id="${__app__.security.encode_id($dataset.id)}" hid="${dataset.hid}" size="${dataset.get_size(nice_size=True)}" edam_format="${dataset.datatype.edam_format}" @@ -182,30 +194,32 @@ tool_id="${dataset.creating_job.tool_id}" tool_version="${dataset.creating_job.tool_version}" /> + #end if </metadata> </trackFile> #end for </files> #end if #end if + #if $uglyTestingHack != "enabled": <options> <style> - #if str($track.data_format.data_format_select) in ["gff", "bed", "vcf", "maf", "blastxml"]: - <type>${track.data_format.jbstyle.track_style.display}</type> - #if str($track.data_format.jbstyle.track_style.display) in ["LinearBasicDisplay", "LinearVariantDisplay"]: - <trackShowLabels>${track.data_format.jbstyle.track_style.show_labels}</trackShowLabels> - <trackShowDescriptions>${track.data_format.jbstyle.track_style.show_descriptions}</trackShowDescriptions> + #if str($track.data_format.data_format_select) in ["gff", "bed", "vcf", "maf", "blastxml"]: + <type>${track.data_format.jbstyle.track_style.display}</type> + #if str($track.data_format.jbstyle.track_style.display) in ["LinearBasicDisplay", "LinearVariantDisplay"]: + <trackShowLabels>${track.data_format.jbstyle.track_style.show_labels}</trackShowLabels> + <trackShowDescriptions>${track.data_format.jbstyle.track_style.show_descriptions}</trackShowDescriptions> + #end if #end if - #end if - #if str($track.data_format.data_format_select) in ["bam", "cram"]: - <type>LinearAlignmentsDisplay</type> - #end if - #if str($track.data_format.data_format_select) in ["paf"]: - <type>LinearBasicDisplay</type> - #end if - #if str($track.data_format.data_format_select) in ["hic"]: - <type>LinearHicDisplay</type> - #end if + #if str($track.data_format.data_format_select) in ["bam", "cram"]: + <type>LinearAlignmentsDisplay</type> + #end if + #if str($track.data_format.data_format_select) in ["paf"]: + <type>LinearBasicDisplay</type> + #end if + #if str($track.data_format.data_format_select) in ["hic"]: + <type>LinearHicDisplay</type> + #end if </style> #if str($track.data_format.data_format_select) == "bam": <bam> @@ -264,26 +278,30 @@ </sparql> #end if </options> + #end if </track> #end for #end for </tracks> + </assembly> + #end for +#end if </root> -#end if ]]></configfile> </configfiles> - <inputs> + <repeat name="assemblies" min="1" title="Genome Assembly" help="When too many genomes are never enough"> <conditional name="reference_genome"> - <param help="Built-in references" label="Reference genome to display" name="genome_type_select" type="select"> + <param help="Select a built in, history or remote tabix URI for the reference track" + label="Reference genome source" name="genome_type_select" type="select"> <option selected="True" value="indexed">Use a built-in genome</option> <option value="history">Use a genome from history</option> - <option value="uri">URI for a reference in tabix .gz format </option> + <option value="uri">URI for a reference as tabix with predictable index file URI</option> </param> <when value="indexed"> <param - help="If your genome of interest is not listed, contact the Galaxy team" - label="Select a reference genome" + help="If not listed, add a custom genome, use a history genome or a remote URI tabix genome" + label="Select a built in reference genome or custom genome" name="genome" type="select" optional="true"> @@ -310,7 +328,7 @@ type="text"> </param> <param - label="Reference key - dbkey equivalent" + label="Reference dbkey for tracks with this genome, such as hg38 or SacCer4" name="refname" type="text"> </param> @@ -428,9 +446,8 @@ </conditional> </repeat> </repeat> - + </repeat> <expand macro="general_options" /> - <param type="hidden" name="uglyTestingHack" value="" /> </inputs> <outputs> @@ -442,115 +459,144 @@ </outputs> <tests> <test> - <param name="reference_genome|genome_type_select" value="history"/> - <param name="reference_genome|genome" value="merlin.fa"/> - <repeat name="track_groups"> - <param name="category" value="Default" /> - <repeat name="data_tracks"> - <conditional name="data_format"> - <param name="data_format_select" value="bigwig"/> - <conditional name="useuri"> - <param name="annotation" value="bw/merlin.bw"/> - <param name="insource" value="history"/> + <repeat name="assemblies"> + <conditional name="reference_genome"> + <param name="genome_type_select" value="history"/> + <param name="genome" value="merlin.fa"/> + <param name="genome.ext" value="fasta"/> + <param name="genome.name" value="Merlin"/> + </conditional> + <repeat name="track_groups"> + <param name="category" value="Default" /> + <repeat name="data_tracks"> + <conditional name="data_format"> + <param name="data_format_select" value="bigwig"/> + <conditional name="useuri"> + <param name="annotation" value="bw/merlin.bw"/> + <param name="insource" value="history"/> + </conditional> </conditional> - </conditional> - </repeat> + </repeat> + </repeat> </repeat> <param name="uglyTestingHack" value="enabled" /> <output name="output"> <assert_contents> <has_text text="genome path="></has_text> - <has_text text="dataset id="></has_text> - <has_text text="history id="></has_text> + <has_text text="label="></has_text> + <has_text text="format="></has_text> <has_text text="metadata"></has_text> - <has_text text="tool_id"></has_text> + <has_text text="useuri="></has_text> <has_text text="trackFile path="></has_text> - <has_text text="file_ext="bigwig""></has_text> + <has_text text="ext="bigwig""></has_text> <has_text text="format="bigwig""></has_text> </assert_contents> </output> </test> <test> - <param name="reference_genome|genome_type_select" value="history"/> - <param name="reference_genome|genome" value="merlin.fa"/> - <repeat name="track_groups"> - <param name="category" value="Default" /> - <repeat name="data_tracks"> - <conditional name="data_format"> - <param name="data_format_select" value="vcf"/> - <conditional name="useuri"> - <param name="insource" value="history"/> - <param name="annotation" value="vcf/merlin.vcf"/> + <repeat name="assemblies"> + <conditional name="reference_genome"> + <param name="genome_type_select" value="history"/> + <param name="genome" value="merlin.fa"/> + <param name="genome.ext" value="fasta"/> + <param name="genome.name" value="Merlin"/> + </conditional> + <repeat name="track_groups"> + <param name="category" value="Default" /> + <repeat name="data_tracks"> + <conditional name="data_format"> + <param name="data_format_select" value="vcf"/> + <conditional name="useuri"> + <param name="insource" value="history"/> + <param name="annotation" value="vcf/merlin.vcf"/> + </conditional> </conditional> - </conditional> + </repeat> </repeat> </repeat> <param name="uglyTestingHack" value="enabled" /> <output name="output"> <assert_contents> <has_text text="genome path="></has_text> - <has_text text="dataset id="></has_text> - <has_text text="history id="></has_text> + <has_text text="label="></has_text> + <has_text text="format="></has_text> <has_text text="metadata"></has_text> - <has_text text="tool_id"></has_text> + <has_text text="useuri="></has_text> <has_text text="trackFile path="></has_text> <has_text text="ext="vcf" label="merlin.vcf""></has_text> </assert_contents> </output> </test> <test> - <param name="reference_genome|genome_type_select" value="history"/> - <param name="reference_genome|genome" value="merlin.fa"/> + <repeat name="assemblies"> + <conditional name="reference_genome"> + <param name="genome_type_select" value="history"/> + <param name="genome" value="merlin.fa"/> + <param name="genome.ext" value="fasta"/> + <param name="genome.name" value="Merlin"/> + </conditional> + </repeat> <param name="uglyTestingHack" value="enabled" /> <output name="output"> <assert_contents> <has_text text="genome path="></has_text> - <has_text text="dataset id="></has_text> - <has_text text="history id="></has_text> + <has_text text="label="></has_text> + <has_text text="format="></has_text> <has_text text="metadata"></has_text> - <has_text text="tool_id"></has_text> </assert_contents> </output> </test> <test> - <param name="reference_genome|genome_type_select" value="history"/> - <param name="reference_genome|genome" value="merlin.fa"/> - <repeat name="track_groups"> - <param name="category" value="Default" /> - <repeat name="data_tracks"> - <conditional name="data_format"> - <param name="data_format_select" value="bed"/> - <conditional name="useuri"> - <param name="insource" value="history"/> - <param name="annotation" value="bed/test-3.bed"/> - </conditional> - </conditional> + <repeat name="assemblies"> + <conditional name="reference_genome"> + <param name="genome_type_select" value="history"/> + <param name="genome" value="merlin.fa"/> + <param name="genome.ext" value="fasta"/> + <param name="genome.name" value="Merlin"/> + </conditional> + <repeat name="track_groups"> + <param name="category" value="Default" /> + <repeat name="data_tracks"> + <conditional name="data_format"> + <param name="data_format_select" value="vcf"/> + <conditional name="useuri"> + <param name="insource" value="history"/> + <param name="annotation" value="vcf/merlin.vcf"/> + </conditional> + </conditional> + </repeat> </repeat> </repeat> <param name="uglyTestingHack" value="enabled" /> <output name="output"> <assert_contents> <has_text text="genome path="></has_text> - <has_text text="dataset id="></has_text> - <has_text text="history id="></has_text> + <has_text text="label="></has_text> + <has_text text="format="></has_text> <has_text text="metadata"></has_text> - <has_text text="tool_id"></has_text> + <has_text text="useuri="></has_text> <has_text text="trackFile path="></has_text> <has_text text="ext="bed" label="test-3.bed""></has_text> </assert_contents> </output> </test> <test> - <param name="reference_genome|genome_type_select" value="history"/> - <param name="reference_genome|genome" value="merlin.fa"/> - <repeat name="track_groups"> - <param name="category" value="Auto Coloured" /> - <repeat name="data_tracks"> - <conditional name="data_format"> + <repeat name="assemblies"> + <conditional name="reference_genome"> + <param name="genome_type_select" value="history"/> + <param name="genome" value="merlin.fa"/> + <param name="genome.ext" value="fasta"/> + <param name="genome.name" value="Merlin"/> + </conditional> + <repeat name="track_groups"> + <param name="category" value="Default" /> + <repeat name="data_tracks"> + <conditional name="data_format"> <param name="data_format_select" value="gff"/> - <conditional name="useuri"> - <param name="insource" value="history"/> - <param name="annotation" value="gff3/A.gff"/> + <conditional name="useuri"> + <param name="insource" value="history"/> + <param name="annotation" value="gff3/A.gff"/> + </conditional> </conditional> <conditional name="match_part"> <param name="match_part_select" value="false"/> @@ -563,7 +609,7 @@ <param name="color_select" value="automatic"/> </conditional> </section> - </conditional> + </repeat> </repeat> </repeat> @@ -770,69 +816,72 @@ </output> </test> <test> - <param name="reference_genome|genome_type_select" value="history"/> - <param name="reference_genome|genome" value="merlin.fa"/> - - <repeat name="track_groups"> - <param name="category" value="With menu or index" /> - <repeat name="data_tracks"> - <conditional name="data_format"> - <param name="data_format_select" value="gff"/> - <conditional name="useuri"> - <param name="annotation" value="gff3/1.gff"/> - <param name="insource" value= "history"/> - </conditional> - <conditional name="match_part"> - <param name="match_part_select" value="false"/> - </conditional> - <section name="jbcolor_scale"> - <conditional name="color_score"> - <param name="color_score_select" value="none"/> + <repeat name="assemblies"> + <conditional name="reference_genome"> + <param name="genome_type_select" value="history"/> + <param name="genome" value="merlin.fa"/> + <param name="genome.ext" value="fasta"/> + <param name="genome.name" value="Merlin"/> + </conditional> + <repeat name="track_groups"> + <param name="category" value="Default" /> + <repeat name="data_tracks"> + <conditional name="data_format"> + <param name="data_format_select" value="gff"/> + <conditional name="useuri"> + <param name="annotation" value="gff3/1.gff"/> + <param name="insource" value= "history"/> </conditional> - <conditional name="color"> - <param name="color_select" value="automatic"/> + <conditional name="match_part"> + <param name="match_part_select" value="false"/> </conditional> - </section> - <section name="jbmenu"> - <repeat name="track_menu"> - <param name="menu_action" value="iframeDialog"/> - <param name="menu_label" value="Some menu item"/> - <param name="menu_title" value="Frame title"/> - <param name="menu_url" value="https://example.com/#!/?id={name}&q={type}&z="{end}""/> - <param name="menu_icon" value="dijitIconNewTask"/> - </repeat> - <repeat name="track_menu"> - <param name="menu_action" value="newWindow"/> - <param name="menu_label" value="Another menu item"/> - <param name="menu_title" value="Frame title 2"/> - <param name="menu_url" value="https://example.com/#!/?id={name}&q={type}&z="{end}""/> - </repeat> - </section> - </conditional> - </repeat> - <repeat name="data_tracks"> - <conditional name="data_format"> + <section name="jbcolor_scale"> + <conditional name="color_score"> + <param name="color_score_select" value="none"/> + </conditional> + <conditional name="color"> + <param name="color_select" value="automatic"/> + </conditional> + </section> + <section name="jbmenu"> + <repeat name="track_menu"> + <param name="menu_action" value="iframeDialog"/> + <param name="menu_label" value="Some menu item"/> + <param name="menu_title" value="Frame title"/> + <param name="menu_url" value="https://example.com/#!/?id={name}&q={type}&z="{end}""/> + <param name="menu_icon" value="dijitIconNewTask"/> + </repeat> + <repeat name="track_menu"> + <param name="menu_action" value="newWindow"/> + <param name="menu_label" value="Another menu item"/> + <param name="menu_title" value="Frame title 2"/> + <param name="menu_url" value="https://example.com/#!/?id={name}&q={type}&z="{end}""/> + </repeat> + </section> + </conditional> + </repeat> + <repeat name="data_tracks"> + <conditional name="data_format"> <param name="data_format_select" value="gff"/> - <conditional name="useuri"> - <param name="annotation" value="gff3/1.gff"/> - <param name="insource" value= "history"/> - </conditional> - <param name="insource" value= "history"/> - <conditional name="match_part"> - <param name="match_part_select" value="false"/> + <conditional name="useuri"> + <param name="annotation" value="gff3/1.gff"/> + <param name="insource" value= "history"/> + </conditional> + <conditional name="match_part"> + <param name="match_part_select" value="false"/> + </conditional> + <section name="jbcolor_scale"> + <conditional name="color_score"> + <param name="color_score_select" value="none"/> + </conditional> + <conditional name="color"> + <param name="color_select" value="automatic"/> + </conditional> + </section> </conditional> - <section name="jbcolor_scale"> - <conditional name="color_score"> - <param name="color_score_select" value="none"/> - </conditional> - <conditional name="color"> - <param name="color_select" value="automatic"/> - </conditional> - </section> - </conditional> - </repeat> + </repeat> </repeat> - + </repeat> <param name="uglyTestingHack" value="enabled" /> <output name="output"> <assert_contents> @@ -841,6 +890,7 @@ </assert_contents> </output> </test> + <!-- TODO add a synteny test --> <!-- TODO add a bam and a cram test --> <!-- TODO add an hic test -->
--- a/jbrowse2broken.py Tue Mar 26 00:52:34 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1656 +0,0 @@ -#!/usr/bin/env python -# change to accumulating all configuration for config.json based on the default from the clone -import argparse -import binascii -import datetime -import json -import logging -import os -import re -import shutil -import struct -import subprocess -import tempfile -import urllib.request -import xml.etree.ElementTree as ET -from collections import defaultdict - -logging.basicConfig(level=logging.INFO) -log = logging.getLogger("jbrowse") - -JB2VER = "v2.10.3" -# version pinned for cloning - -TODAY = datetime.datetime.now().strftime("%Y-%m-%d") -GALAXY_INFRASTRUCTURE_URL = None - -# version pinned for cloning - -mapped_chars = { - ">": "__gt__", - "<": "__lt__", - "'": "__sq__", - '"': "__dq__", - "[": "__ob__", - "]": "__cb__", - "{": "__oc__", - "}": "__cc__", - "@": "__at__", - "#": "__pd__", - "": "__cn__", -} - - -class ColorScaling(object): - - COLOR_FUNCTION_TEMPLATE = """ - function(feature, variableName, glyphObject, track) {{ - var score = {score}; - {opacity} - return 'rgba({red}, {green}, {blue}, ' + opacity + ')'; - }} - """ - - COLOR_FUNCTION_TEMPLATE_QUAL = r""" - function(feature, variableName, glyphObject, track) {{ - var search_up = function self(sf, attr){{ - if(sf.get(attr) !== undefined){{ - return sf.get(attr); - }} - if(sf.parent() === undefined) {{ - return; - }}else{{ - return self(sf.parent(), attr); - }} - }}; - - var search_down = function self(sf, attr){{ - if(sf.get(attr) !== undefined){{ - return sf.get(attr); - }} - if(sf.children() === undefined) {{ - return; - }}else{{ - var kids = sf.children(); - for(var child_idx in kids){{ - var x = self(kids[child_idx], attr); - if(x !== undefined){{ - return x; - }} - }} - return; - }} - }}; - - var color = ({user_spec_color} || search_up(feature, 'color') || search_down(feature, 'color') || {auto_gen_color}); - var score = (search_up(feature, 'score') || search_down(feature, 'score')); - {opacity} - if(score === undefined){{ opacity = 1; }} - var result = /^#?([a-f\d]{{2}})([a-f\d]{{2}})([a-f\d]{{2}})$/i.exec(color); - var red = parseInt(result[1], 16); - var green = parseInt(result[2], 16); - var blue = parseInt(result[3], 16); - if(isNaN(opacity) || opacity < 0){{ opacity = 0; }} - return 'rgba(' + red + ',' + green + ',' + blue + ',' + opacity + ')'; - }} - """ - - OPACITY_MATH = { - "linear": """ - var opacity = (score - ({min})) / (({max}) - ({min})); - """, - "logarithmic": """ - var opacity = Math.log10(score - ({min})) / Math.log10(({max}) - ({min})); - """, - "blast": """ - var opacity = 0; - if(score == 0.0) {{ - opacity = 1; - }} else {{ - opacity = (20 - Math.log10(score)) / 180; - }} - """, - } - - BREWER_COLOUR_IDX = 0 - BREWER_COLOUR_SCHEMES = [ - (166, 206, 227), - (31, 120, 180), - (178, 223, 138), - (51, 160, 44), - (251, 154, 153), - (227, 26, 28), - (253, 191, 111), - (255, 127, 0), - (202, 178, 214), - (106, 61, 154), - (255, 255, 153), - (177, 89, 40), - (228, 26, 28), - (55, 126, 184), - (77, 175, 74), - (152, 78, 163), - (255, 127, 0), - ] - - BREWER_DIVERGING_PALLETES = { - "BrBg": ("#543005", "#003c30"), - "PiYg": ("#8e0152", "#276419"), - "PRGn": ("#40004b", "#00441b"), - "PuOr": ("#7f3b08", "#2d004b"), - "RdBu": ("#67001f", "#053061"), - "RdGy": ("#67001f", "#1a1a1a"), - "RdYlBu": ("#a50026", "#313695"), - "RdYlGn": ("#a50026", "#006837"), - "Spectral": ("#9e0142", "#5e4fa2"), - } - - def __init__(self): - self.brewer_colour_idx = 0 - - def rgb_from_hex(self, hexstr): - # http://stackoverflow.com/questions/4296249/how-do-i-convert-a-hex-triplet-to-an-rgb-tuple-and-back - return struct.unpack("BBB", binascii.unhexlify(hexstr)) - - def min_max_gff(self, gff_file): - min_val = None - max_val = None - with open(gff_file, "r") as handle: - for line in handle: - try: - value = float(line.split("\t")[5]) - min_val = min(value, (min_val or value)) - max_val = max(value, (max_val or value)) - - if value < min_val: - min_val = value - - if value > max_val: - max_val = value - except Exception: - pass - return min_val, max_val - - def hex_from_rgb(self, r, g, b): - return "#%02x%02x%02x" % (r, g, b) - - def _get_colours(self): - r, g, b = self.BREWER_COLOUR_SCHEMES[ - self.brewer_colour_idx % len(self.BREWER_COLOUR_SCHEMES) - ] - self.brewer_colour_idx += 1 - return r, g, b - - def parse_menus(self, track): - trackConfig = {"menuTemplate": [{}, {}, {}, {}]} - - if "menu" in track["menus"]: - menu_list = [track["menus"]["menu"]] - if isinstance(track["menus"]["menu"], list): - menu_list = track["menus"]["menu"] - - for m in menu_list: - tpl = { - "action": m["action"], - "label": m.get("label", "{name}"), - "iconClass": m.get("iconClass", "dijitIconBookmark"), - } - if "url" in m: - tpl["url"] = m["url"] - if "content" in m: - tpl["content"] = m["content"] - if "title" in m: - tpl["title"] = m["title"] - - trackConfig["menuTemplate"].append(tpl) - - return trackConfig - - def parse_colours(self, track, trackFormat, gff3=None): - # Wiggle tracks have a bicolor pallete - trackConfig = {"style": {}} - if trackFormat == "wiggle": - - trackConfig["style"]["pos_color"] = track["wiggle"]["color_pos"] - trackConfig["style"]["neg_color"] = track["wiggle"]["color_neg"] - - if trackConfig["style"]["pos_color"] == "__auto__": - trackConfig["style"]["neg_color"] = self.hex_from_rgb( - *self._get_colours() - ) - trackConfig["style"]["pos_color"] = self.hex_from_rgb( - *self._get_colours() - ) - - # Wiggle tracks can change colour at a specified place - bc_pivot = track["wiggle"]["bicolor_pivot"] - if bc_pivot not in ("mean", "zero"): - # The values are either one of those two strings - # or a number - bc_pivot = float(bc_pivot) - trackConfig["bicolor_pivot"] = bc_pivot - elif "scaling" in track: - if track["scaling"]["method"] == "ignore": - if track["scaling"]["scheme"]["color"] != "__auto__": - trackConfig["style"]["color"] = track["scaling"]["scheme"]["color"] - else: - trackConfig["style"]["color"] = self.hex_from_rgb( - *self._get_colours() - ) - else: - # Scored method - algo = track["scaling"]["algo"] - # linear, logarithmic, blast - scales = track["scaling"]["scales"] - # type __auto__, manual (min, max) - scheme = track["scaling"]["scheme"] - # scheme -> (type (opacity), color) - # ================================== - # GENE CALLS OR BLAST - # ================================== - if trackFormat == "blast": - red, green, blue = self._get_colours() - color_function = self.COLOR_FUNCTION_TEMPLATE.format( - **{ - "score": "feature._parent.get('score')", - "opacity": self.OPACITY_MATH["blast"], - "red": red, - "green": green, - "blue": blue, - } - ) - trackConfig["style"]["color"] = color_function.replace("\n", "") - elif trackFormat == "gene_calls": - # Default values, based on GFF3 spec - min_val = 0 - max_val = 1000 - # Get min/max and build a scoring function since JBrowse doesn't - if scales["type"] == "automatic" or scales["type"] == "__auto__": - min_val, max_val = self.min_max_gff(gff3) - else: - min_val = scales.get("min", 0) - max_val = scales.get("max", 1000) - - if scheme["color"] == "__auto__": - user_color = "undefined" - auto_color = "'%s'" % self.hex_from_rgb(*self._get_colours()) - elif scheme["color"].startswith("#"): - user_color = "'%s'" % self.hex_from_rgb( - *self.rgb_from_hex(scheme["color"][1:]) - ) - auto_color = "undefined" - else: - user_color = "undefined" - auto_color = "'%s'" % self.hex_from_rgb(*self._get_colours()) - - color_function = self.COLOR_FUNCTION_TEMPLATE_QUAL.format( - **{ - "opacity": self.OPACITY_MATH[algo].format( - **{"max": max_val, "min": min_val} - ), - "user_spec_color": user_color, - "auto_gen_color": auto_color, - } - ) - - trackConfig["style"]["color"] = color_function.replace("\n", "") - return trackConfig - - -def etree_to_dict(t): - if t is None: - return {} - - d = {t.tag: {} if t.attrib else None} - children = list(t) - if children: - dd = defaultdict(list) - for dc in map(etree_to_dict, children): - for k, v in dc.items(): - dd[k].append(v) - d = {t.tag: {k: v[0] if len(v) == 1 else v for k, v in dd.items()}} - if t.attrib: - d[t.tag].update(("@" + k, v) for k, v in t.attrib.items()) - if t.text: - text = t.text.strip() - if children or t.attrib: - if text: - d[t.tag]["#text"] = text - else: - d[t.tag] = text - return d - - -INSTALLED_TO = os.path.dirname(os.path.realpath(__file__)) - - -def metadata_from_node(node): - metadata = {} - try: - if len(node.findall("dataset")) != 1: - # exit early - return metadata - except Exception: - return {} - - for (key, value) in node.findall("dataset")[0].attrib.items(): - metadata["dataset_%s" % key] = value - - if node.findall("history"): - for (key, value) in node.findall("history")[0].attrib.items(): - metadata["history_%s" % key] = value - - if node.findall("metadata"): - for (key, value) in node.findall("metadata")[0].attrib.items(): - metadata["metadata_%s" % key] = value - # Additional Mappings applied: - metadata[ - "dataset_edam_format" - ] = '<a target="_blank" href="http://edamontology.org/{0}">{1}</a>'.format( - metadata["dataset_edam_format"], metadata["dataset_file_ext"] - ) - metadata["history_user_email"] = '<a href="mailto:{0}">{0}</a>'.format( - metadata["history_user_email"] - ) - metadata["hist_name"] = metadata["history_display_name"] - metadata[ - "history_display_name" - ] = '<a target="_blank" href="{galaxy}/history/view/{encoded_hist_id}">{hist_name}</a>'.format( - galaxy=GALAXY_INFRASTRUCTURE_URL, - encoded_hist_id=metadata["history_id"], - hist_name=metadata["history_display_name"], - ) - if node.findall("tool"): - for (key, value) in node.findall("tool")[0].attrib.items(): - metadata["tool_%s" % key] = value - metadata[ - "tool_tool" - ] = '<a target="_blank" href="{galaxy}/datasets/{encoded_id}/show_params">{tool_id}{tool_version}</a>'.format( - galaxy=GALAXY_INFRASTRUCTURE_URL, - encoded_id=metadata.get("dataset_id", ""), - tool_id=metadata.get("tool_tool_id", ""), - tool_version=metadata.get("tool_tool_version", ""), - ) - return metadata - - -class JbrowseConnector(object): - def __init__(self, outdir, jbrowse2path, genomes): - self.giURL = GALAXY_INFRASTRUCTURE_URL - self.outdir = outdir - self.jbrowse2path = jbrowse2path - os.makedirs(self.outdir, exist_ok=True) - self.genome_paths = genomes - self.genome_name = None - self.genome_names = [] - self.trackIdlist = [] - self.tracksToAdd = [] - self.config_json = {} - self.config_json_file = os.path.join(outdir, "config.json") - self.clone_jbrowse() - - def subprocess_check_call(self, command, output=None): - if output: - log.debug("cd %s && %s > %s", self.outdir, " ".join(command), output) - subprocess.check_call(command, cwd=self.outdir, stdout=output) - else: - log.debug("cd %s && %s", self.outdir, " ".join(command)) - subprocess.check_call(command, cwd=self.outdir) - - def subprocess_popen(self, command): - log.debug(command) - p = subprocess.Popen( - command, - cwd=self.outdir, - shell=True, - stdin=subprocess.PIPE, - stdout=subprocess.PIPE, - stderr=subprocess.PIPE, - ) - output, err = p.communicate() - retcode = p.returncode - if retcode != 0: - log.error(command) - log.error(output) - log.error(err) - raise RuntimeError("Command failed with exit code %s" % (retcode)) - - def _prepare_track_style(self, trackDict): - style_data = { - "type": "LinearBasicDisplay", - "displayId": "%s-LinearBasicDisplay" % trackDict["trackId"], - } - - if trackDict.get("displays", None): # use first if multiple like bed - style_data["type"] = trackDict["displays"][0]["type"] - style_data["displayId"] = trackDict["displays"][0]["displayId"] - return { - "displays": [ - style_data, - ] - } - - def subprocess_check_output(self, command): - log.debug(" ".join(command)) - return subprocess.check_output(command, cwd=self.outdir) - - def symlink_or_copy(self, src, dest): - if "GALAXY_JBROWSE_SYMLINKS" in os.environ and bool( - os.environ["GALAXY_JBROWSE_SYMLINKS"] - ): - cmd = ["ln", "-s", src, dest] - else: - cmd = ["cp", src, dest] - - return self.subprocess_check_call(cmd) - - def process_genomes(self): - assemblies = [] - useuri = False - for i, genome_node in enumerate(self.genome_paths): - if genome_node["useuri"].strip().lower() == "yes": - useuri = True - genome_name = genome_node["meta"]["dataset_dname"].strip() - if len(genome_name.split()) > 1: - genome_name = genome_name.split()[0] - # spaces and cruft break scripts when substituted - if genome_name not in self.genome_names: - # ignore dupes - can have multiple pafs with same references? - fapath = genome_node["path"] - if not useuri: - fapath = os.path.realpath(fapath) - assem = self.make_assembly(fapath, genome_name, useuri) - assemblies.append(assem) - self.genome_names.append(genome_name) - if self.genome_name is None: - self.genome_name = ( - genome_name # first one for all tracks - other than paf - ) - self.genome_sequence_adapter = assem["sequence"]["adapter"] - self.genome_firstcontig = None - if not useuri: - fl = open(fapath, "r").readline() - fls = fl.strip().split(">") - if len(fls) > 1: - fl = fls[1] - if len(fl.split()) > 1: - self.genome_firstcontig = fl.split()[0].strip() - else: - self.genome_firstcontig = fl - else: - fl = urllib.request.urlopen(fapath + ".fai").readline() - if fl: # is first row of the text fai so the first contig name - self.genome_firstcontig = ( - fl.decode("utf8").strip().split()[0] - ) - if self.config_json.get("assemblies", None): - self.config_json["assemblies"] += assemblies - else: - self.config_json["assemblies"] = assemblies - - def make_assembly(self, fapath, gname, useuri): - if useuri: - faname = fapath - adapter = { - "type": "BgzipFastaAdapter", - "fastaLocation": { - "uri": faname, - "locationType": "UriLocation", - }, - "faiLocation": { - "uri": faname + ".fai", - "locationType": "UriLocation", - }, - "gziLocation": { - "uri": faname + ".gzi", - "locationType": "UriLocation", - }, - } - else: - faname = gname + ".fa.gz" - fadest = os.path.realpath(os.path.join(self.outdir, faname)) - cmd = "bgzip -i -c %s -I %s.gzi > %s && samtools faidx %s" % ( - fapath, - fadest, - fadest, - fadest, - ) - self.subprocess_popen(cmd) - - adapter = { - "type": "BgzipFastaAdapter", - "fastaLocation": { - "uri": faname, - }, - "faiLocation": { - "uri": faname + ".fai", - }, - "gziLocation": { - "uri": faname + ".gzi", - }, - } - - trackDict = { - "name": gname, - "sequence": { - "type": "ReferenceSequenceTrack", - "trackId": gname, - "adapter": adapter, - }, - "displays": [ - { - "type": "LinearReferenceSequenceDisplay", - "displayId": "%s-LinearReferenceSequenceDisplay" % gname, - }, - { - "type": "LinearGCContentDisplay", - "displayId": "%s-LinearGCContentDisplay" % gname, - }, - ], - } - return trackDict - - def add_default_view(self): - cmd = [ - "jbrowse", - "set-default-session", - "-s", - self.config_json_file, - "-t", - ",".join(self.trackIdlist), - "-n", - "JBrowse2 in Galaxy", - "--target", - self.config_json_file, - "-v", - " LinearGenomeView", - ] - self.subprocess_check_call(cmd) - - def write_config(self): - with open(self.config_json_file, "w") as fp: - json.dump(self.config_json, fp, indent=2) - - def text_index(self): - # Index tracks - args = [ - "jbrowse", - "text-index", - "--target", - os.path.join(self.outdir, "data"), - "--assemblies", - self.genome_name, - ] - - tracks = ",".join(self.trackIdlist) - if tracks: - args += ["--tracks", tracks] - - self.subprocess_check_call(args) - - def add_hic(self, data, trackData): - """ - HiC adapter. - https://github.com/aidenlab/hic-format/blob/master/HiCFormatV9.md - for testing locally, these work: - HiC data is from https://s3.amazonaws.com/igv.broadinstitute.org/data/hic/intra_nofrag_30.hic - using hg19 reference track as a - 'BgzipFastaAdapter' - fastaLocation: - uri: 'https://s3.amazonaws.com/jbrowse.org/genomes/GRCh38/fasta/GRCh38.fa.gz', - faiLocation: - uri: 'https://s3.amazonaws.com/jbrowse.org/genomes/GRCh38/fasta/GRCh38.fa.gz.fai', - gziLocation: - uri: 'https://s3.amazonaws.com/jbrowse.org/genomes/GRCh38/fasta/GRCh38.fa.gz.gzi', - Cool will not be likely to be a good fit - see discussion at https://github.com/GMOD/jbrowse-components/issues/2438 - """ - tId = trackData["label"] - # can be served - if public. - # dsId = trackData["metadata"]["dataset_id"] - # url = "%s/api/datasets/%s/display?to_ext=hic " % (self.giURL, dsId) - useuri = trackData["useuri"].lower() == "yes" - if useuri: - uri = data - else: - uri = trackData["hic_url"] - categ = trackData["category"] - trackDict = { - "type": "HicTrack", - "trackId": tId, - "name": uri, - "assemblyNames": [self.genome_name], - "category": [ - categ, - ], - "adapter": { - "type": "HicAdapter", - "hicLocation": uri, - }, - "displays": [ - { - "type": "LinearHicDisplay", - "displayId": "%s-LinearHicDisplay" % tId, - }, - ], - } - style_json = self._prepare_track_style(trackDict) - trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) - self.trackIdlist.append(tId) - - def add_maf(self, data, trackData): - """ - from https://github.com/cmdcolin/maf2bed - Note: Both formats start with a MAF as input, and note that your MAF file should contain the species name and chromosome name - e.g. hg38.chr1 in the sequence identifiers. - need the reference id - eg hg18, for maf2bed.pl as the first parameter - """ - tId = trackData["label"] - mafPlugin = { - "plugins": [ - { - "name": "MafViewer", - "url": "https://unpkg.com/jbrowse-plugin-mafviewer/dist/jbrowse-plugin-mafviewer.umd.production.min.js", - } - ] - } - categ = trackData["category"] - fname = "%s.bed" % tId - dest = "%s/%s" % (self.outdir, fname) - gname = self.genome_name - cmd = [ - "bash", - os.path.join(INSTALLED_TO, "convertMAF.sh"), - data, - gname, - INSTALLED_TO, - dest, - ] - self.subprocess_check_call(cmd) - # Construct samples list - # We could get this from galaxy metadata, not sure how easily. - ps = subprocess.Popen(["grep", "^s [^ ]*", "-o", data], stdout=subprocess.PIPE) - output = subprocess.check_output(("sort", "-u"), stdin=ps.stdout) - ps.wait() - outp = output.decode("ascii") - soutp = outp.split("\n") - samp = [x.split("s ")[1] for x in soutp if x.startswith("s ")] - samples = [x.split(".")[0] for x in samp] - trackDict = { - "type": "MafTrack", - "trackId": tId, - "name": trackData["name"], - "category": [ - categ, - ], - "adapter": { - "type": "MafTabixAdapter", - "samples": samples, - "bedGzLocation": { - "uri": fname + ".sorted.bed.gz", - }, - "index": { - "location": { - "uri": fname + ".sorted.bed.gz.tbi", - }, - }, - }, - "assemblyNames": [self.genome_name], - "displays": [ - { - "type": "LinearBasicDisplay", - "displayId": "%s-LinearBasicDisplay" % tId, - }, - { - "type": "LinearArcDisplay", - "displayId": "%s-LinearArcDisplay" % tId, - }, - ], - } - style_json = self._prepare_track_style(trackDict) - trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) - self.trackIdlist.append(tId) - if self.config_json.get("plugins", None): - self.config_json["plugins"].append(mafPlugin[0]) - else: - self.config_json.update(mafPlugin) - - def _blastxml_to_gff3(self, xml, min_gap=10): - gff3_unrebased = tempfile.NamedTemporaryFile(delete=False) - cmd = [ - "python", - os.path.join(INSTALLED_TO, "blastxml_to_gapped_gff3.py"), - "--trim", - "--trim_end", - "--include_seq", - "--min_gap", - str(min_gap), - xml, - ] - subprocess.check_call(cmd, cwd=self.outdir, stdout=gff3_unrebased) - gff3_unrebased.close() - return gff3_unrebased.name - - def add_blastxml(self, data, trackData, blastOpts, **kwargs): - gff3 = self._blastxml_to_gff3(data, min_gap=blastOpts["min_gap"]) - - if "parent" in blastOpts and blastOpts["parent"] != "None": - gff3_rebased = tempfile.NamedTemporaryFile(delete=False) - cmd = ["python", os.path.join(INSTALLED_TO, "gff3_rebase.py")] - if blastOpts.get("protein", "false") == "true": - cmd.append("--protein2dna") - cmd.extend([os.path.realpath(blastOpts["parent"]), gff3]) - subprocess.check_call(cmd, cwd=self.outdir, stdout=gff3_rebased) - gff3_rebased.close() - - # Replace original gff3 file - shutil.copy(gff3_rebased.name, gff3) - os.unlink(gff3_rebased.name) - url = "%s.gff3" % trackData["label"] - dest = "%s/%s" % (self.outdir, url) - self._sort_gff(gff3, dest) - url = url + ".gz" - tId = trackData["label"] - categ = trackData["category"] - trackDict = { - "type": "FeatureTrack", - "trackId": tId, - "name": trackData["name"], - "assemblyNames": [self.genome_name], - "category": [ - categ, - ], - "adapter": { - "type": "Gff3TabixAdapter", - "gffGzLocation": { - "uri": url, - }, - "index": { - "location": { - "uri": url + ".tbi", - } - }, - }, - "displays": [ - { - "type": "LinearBasicDisplay", - "displayId": "%s-LinearBasicDisplay" % tId, - }, - { - "type": "LinearArcDisplay", - "displayId": "%s-LinearArcDisplay" % tId, - }, - ], - } - style_json = self._prepare_track_style(trackDict) - trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) - self.trackIdlist.append(tId) - os.unlink(gff3) - - def add_bigwig(self, data, trackData): - """ "type": "LinearWiggleDisplay", - "configuration": {}, - "selectedRendering": "", - "resolution": 1, - "posColor": "rgb(228, 26, 28)", - "negColor": "rgb(255, 255, 51)", - "constraints": {} - """ - useuri = trackData["useuri"].lower() == "yes" - if useuri: - url = data - else: - url = "%s.bigwig" % trackData["label"] - # slashes in names cause path trouble - dest = os.path.join(self.outdir, url) - cmd = ["cp", data, dest] - self.subprocess_check_call(cmd) - bwloc = {"uri": url} - tId = trackData["label"] - categ = trackData["category"] - trackDict = { - "type": "QuantitativeTrack", - "trackId": tId, - "name": trackData["name"], - "category": [ - categ, - ], - "assemblyNames": [ - self.genome_name, - ], - "adapter": { - "type": "BigWigAdapter", - "bigWigLocation": bwloc, - }, - "displays": [ - { - "type": "LinearWiggleDisplay", - "displayId": "%s-LinearWiggleDisplay" % tId, - } - ], - } - style_json = self._prepare_track_style(trackDict) - trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) - self.trackIdlist.append(tId) - - def add_bam(self, data, trackData, bam_index=None, **kwargs): - tId = trackData["label"] - useuri = trackData["useuri"].lower() == "yes" - bindex = bam_index - categ = trackData["category"] - if useuri: - url = data - else: - fname = "%s.bam" % trackData["label"] - dest = "%s/%s" % (self.outdir, fname) - url = fname - bindex = fname + ".bai" - self.subprocess_check_call(["cp", data, dest]) - if bam_index is not None and os.path.exists(bam_index): - if not os.path.exists(bindex): - # bai most probably made by galaxy and stored in galaxy dirs, need to copy it to dest - self.subprocess_check_call(["cp", bam_index, bindex]) - else: - # Can happen in exotic condition - # e.g. if bam imported as symlink with datatype=unsorted.bam, then datatype changed to bam - # => no index generated by galaxy, but there might be one next to the symlink target - # this trick allows to skip the bam sorting made by galaxy if already done outside - if os.path.exists(os.path.realpath(data) + ".bai"): - self.symlink_or_copy(os.path.realpath(data) + ".bai", bindex) - else: - log.warn("Could not find a bam index (.bai file) for %s", data) - trackDict = { - "type": "AlignmentsTrack", - "trackId": tId, - "name": trackData["name"], - "category": [ - categ, - ], - "assemblyNames": [self.genome_name], - "adapter": { - "type": "BamAdapter", - "bamLocation": {"uri": url}, - "index": { - "location": { - "uri": bindex, - } - }, - }, - "displays": [ - { - "type": "LinearAlignmentsDisplay", - "displayId": "%s-LinearAlignmentsDisplay" % tId, - } - ], - } - style_json = self._prepare_track_style(trackDict) - trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) - self.trackIdlist.append(tId) - - def add_cram(self, data, trackData, cram_index=None, **kwargs): - tId = trackData["label"] - categ = trackData["category"] - useuri = trackData["useuri"].lower() == "yes" - if useuri: - url = data - else: - fname = "%s.cram" % trackData["label"] - dest = "%s/%s" % (self.outdir, fname) - url = fname - self.subprocess_check_call(["cp", data, dest]) - if cram_index is not None and os.path.exists(cram_index): - if not os.path.exists(dest + ".crai"): - # most probably made by galaxy and stored in galaxy dirs, need to copy it to dest - self.subprocess_check_call( - ["cp", os.path.realpath(cram_index), dest + ".crai"] - ) - else: - cpath = os.path.realpath(dest) + ".crai" - cmd = ["samtools", "index", "-c", "-o", cpath, os.path.realpath(dest)] - logging.debug("executing cmd %s" % " ".join(cmd)) - self.subprocess_check_call(cmd) - trackDict = { - "type": "AlignmentsTrack", - "trackId": tId, - "name": trackData["name"], - "category": [ - categ, - ], - "assemblyNames": [self.genome_name], - "adapter": { - "type": "CramAdapter", - "cramLocation": {"uri": url}, - "craiLocation": { - "uri": url + ".crai", - }, - "sequenceAdapter": self.genome_sequence_adapter, - }, - "displays": [ - { - "type": "LinearAlignmentsDisplay", - "displayId": "%s-LinearAlignmentsDisplay" % tId, - }, - ], - } - style_json = self._prepare_track_style(trackDict) - trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) - self.trackIdlist.append(tId) - - def add_vcf(self, data, trackData): - tId = trackData["label"] - # url = "%s/api/datasets/%s/display" % ( - # self.giURL, - # trackData["metadata"]["dataset_id"], - # ) - categ = trackData["category"] - useuri = trackData["useuri"].lower() == "yes" - if useuri: - url = data - else: - url = "%s.vcf.gz" % tId - dest = "%s/%s" % (self.outdir, url) - cmd = "bgzip -c %s > %s" % (data, dest) - self.subprocess_popen(cmd) - cmd = ["tabix", "-f", "-p", "vcf", dest] - self.subprocess_check_call(cmd) - trackDict = { - "type": "VariantTrack", - "trackId": tId, - "name": trackData["name"], - "assemblyNames": [self.genome_name], - "category": [ - categ, - ], - "adapter": { - "type": "VcfTabixAdapter", - "vcfGzLocation": {"uri": url}, - "index": { - "location": { - "uri": url + ".tbi", - } - }, - }, - "displays": [ - { - "type": "LinearVariantDisplay", - "displayId": "%s-LinearVariantDisplay" % tId, - }, - { - "type": "ChordVariantDisplay", - "displayId": "%s-ChordVariantDisplay" % tId, - }, - { - "type": "LinearPairedArcDisplay", - "displayId": "%s-LinearPairedArcDisplay" % tId, - }, - ], - } - style_json = self._prepare_track_style(trackDict) - trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) - self.trackIdlist.append(tId) - - def _sort_gff(self, data, dest): - # Only index if not already done - if not os.path.exists(dest): - cmd = "jbrowse sort-gff '%s' | bgzip -c > '%s'" % ( - data, - dest, - ) # "gff3sort.pl --precise '%s' | grep -v \"^$\" > '%s'" - self.subprocess_popen(cmd) - self.subprocess_check_call(["tabix", "-f", "-p", "gff", dest]) - - def _sort_bed(self, data, dest): - # Only index if not already done - if not os.path.exists(dest): - cmd = "sort -k1,1 -k2,2n '%s' | bgzip -c > '%s'" % (data, dest) - self.subprocess_popen(cmd) - cmd = ["tabix", "-f", "-p", "bed", dest] - self.subprocess_check_call(cmd) - - def add_gff(self, data, ext, trackData): - useuri = trackData["useuri"].lower() == "yes" - if useuri: - url = trackData["path"] - else: - url = "%s.%s.gz" % (trackData["label"], ext) - dest = "%s/%s" % (self.outdir, url) - self._sort_gff(data, dest) - tId = trackData["label"] - categ = trackData["category"] - trackDict = { - "type": "FeatureTrack", - "trackId": tId, - "name": trackData["name"], - "assemblyNames": [self.genome_name], - "category": [ - categ, - ], - "adapter": { - "type": "Gff3TabixAdapter", - "gffGzLocation": { - "uri": url, - }, - "index": { - "location": { - "uri": url + ".tbi", - } - }, - }, - "displays": [ - { - "type": "LinearBasicDisplay", - "displayId": "%s-LinearBasicDisplay" % tId, - }, - { - "type": "LinearArcDisplay", - "displayId": "%s-LinearArcDisplay" % tId, - }, - ], - } - style_json = self._prepare_track_style(trackDict) - trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) - self.trackIdlist.append(tId) - - def add_bed(self, data, ext, trackData): - tId = trackData["label"] - categ = trackData["category"] - useuri = trackData["useuri"].lower() == "yes" - if useuri: - url = data - else: - url = "%s.%s.gz" % (trackData["label"], ext) - dest = "%s/%s" % (self.outdir, url) - self._sort_bed(data, dest) - trackDict = { - "type": "FeatureTrack", - "trackId": tId, - "name": trackData["name"], - "assemblyNames": [self.genome_name], - "adapter": { - "category": [ - categ, - ], - "type": "BedTabixAdapter", - "bedGzLocation": { - "uri": url, - }, - "index": { - "location": { - "uri": url + ".tbi", - } - }, - }, - "displays": [ - { - "type": "LinearBasicDisplay", - "displayId": "%s-LinearBasicDisplay" % tId, - }, - { - "type": "LinearPileupDisplay", - "displayId": "%s-LinearPileupDisplay" % tId, - }, - { - "type": "LinearArcDisplay", - "displayId": "%s-LinearArcDisplay" % tId, - }, - ], - } - style_json = self._prepare_track_style(trackDict) - trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) - self.trackIdlist.append(tId) - - def add_paf(self, data, trackData, pafOpts, **kwargs): - tname = trackData["name"] - tId = trackData["label"] - categ = trackData["category"] - pgnames = [x.strip() for x in pafOpts["genome_label"].split(",")] - pgpaths = [x.strip() for x in pafOpts["genome"].split(",")] - passnames = [self.genome_name] # always first - for i, gname in enumerate(pgnames): - if len(gname.split()) > 1: - gname = gname.split()[0] - passnames.append(gname) - # trouble from spacey names in command lines avoidance - if gname not in self.genome_names: - # ignore if already there - eg for duplicates among pafs. - useuri = pgpaths[i].startswith("http://") or pgpaths[i].startswith( - "https://" - ) - asstrack = self.make_assembly(pgpaths[i], gname, useuri) - self.genome_names.append(gname) - if self.config_json.get("assemblies", None): - self.config_json["assemblies"].append(asstrack) - else: - self.config_json["assemblies"] = [ - asstrack, - ] - url = "%s.paf" % (trackData["label"]) - dest = "%s/%s" % (self.outdir, url) - self.symlink_or_copy(os.path.realpath(data), dest) - trackDict = { - "type": "SyntenyTrack", - "trackId": tId, - "assemblyNames": passnames, - "category": [ - categ, - ], - "name": tname, - "adapter": { - "type": "PAFAdapter", - "pafLocation": {"uri": url}, - "assemblyNames": passnames, - }, - "displays": [ - { - "type": "LinearSyntenyDisplay", - "displayId": "%s-LinearSyntenyDisplay" % tId, - }, - { - "type": "DotPlotDisplay", - "displayId": "%s-DotPlotDisplay" % tId, - }, - ], - } - style_json = self._prepare_track_style(trackDict) - trackDict["style"] = style_json - self.tracksToAdd.append(trackDict) - self.trackIdlist.append(tId) - - def process_annotations(self, track): - category = track["category"].replace("__pd__date__pd__", TODAY) - for i, ( - dataset_path, - dataset_ext, - useuri, - track_human_label, - extra_metadata, - ) in enumerate(track["trackfiles"]): - if not dataset_path.strip().startswith("http"): - # Unsanitize labels (element_identifiers are always sanitized by Galaxy) - for key, value in mapped_chars.items(): - track_human_label = track_human_label.replace(value, key) - track_human_label = track_human_label.replace(" ", "_") - outputTrackConfig = { - "category": category, - "style": track["style"], - } - - outputTrackConfig["label"] = "%s_%i_%s" % ( - dataset_ext, - i, - track_human_label, - ) - outputTrackConfig["useuri"] = useuri - outputTrackConfig["path"] = dataset_path - outputTrackConfig["ext"] = dataset_ext - outputTrackConfig["key"] = track_human_label - - outputTrackConfig["trackset"] = track.get("trackset", {}) - outputTrackConfig["metadata"] = extra_metadata - outputTrackConfig["name"] = track_human_label - - if dataset_ext in ("gff", "gff3"): - self.add_gff( - dataset_path, - dataset_ext, - outputTrackConfig, - ) - elif dataset_ext in ("hic", "juicebox_hic"): - self.add_hic( - dataset_path, - outputTrackConfig, - ) - elif dataset_ext in ("cool", "mcool", "scool"): - hic_url = "%s_%d.juicebox_hic" % (track_human_label, i) - hic_path = os.path.join(self.outdir, hic_url) - self.subprocess_check_call( - [ - "hictk", - "convert", - "-f", - "--output-fmt", - "hic", - dataset_path, - hic_path, - ] - ) - outputTrackConfig["hic_url"] = hic_url - self.add_hic( - hic_path, - outputTrackConfig, - ) - elif dataset_ext in ("bed",): - self.add_bed( - dataset_path, - dataset_ext, - outputTrackConfig, - ) - elif dataset_ext in ("maf",): - self.add_maf( - dataset_path, - outputTrackConfig, - ) - elif dataset_ext == "bigwig": - self.add_bigwig( - dataset_path, - outputTrackConfig, - ) - elif dataset_ext == "bam": - real_indexes = track["conf"]["options"]["bam"]["bam_index"] - self.add_bam( - dataset_path, - outputTrackConfig, - bam_index=real_indexes, - ) - elif dataset_ext == "cram": - real_indexes = track["conf"]["options"]["cram"]["cram_index"] - self.add_cram( - dataset_path, - outputTrackConfig, - cram_index=real_indexes, - ) - elif dataset_ext == "blastxml": - self.add_blastxml( - dataset_path, - outputTrackConfig, - track["conf"]["options"]["blast"], - ) - elif dataset_ext == "vcf": - self.add_vcf(dataset_path, outputTrackConfig) - elif dataset_ext == "paf": - self.add_paf( - dataset_path, - outputTrackConfig, - track["conf"]["options"]["paf"], - ) - else: - logging.warn("Do not know how to handle %s", dataset_ext) - # Return non-human label for use in other fields - yield outputTrackConfig["label"] - - def add_default_session(self, default_data): - """ - Add some default session settings: set some assemblies/tracks on/off - - labels off 1 - { - "id": "JJNRSOoj8cPCTR8ZJ7Yne", - "type": "VariantTrack", - "configuration": "vcf_0_merlin.vcf", - "minimized": false, - "displays": [ - { - "id": "JOvAkv1bdyz5SAJs3JBby", - "type": "LinearVariantDisplay", - "configuration": {}, - "trackShowLabels": false, - "trackShowDescriptions": false - } - ] - }, - - track labels at end of default view - "hideHeader": false, - "hideHeaderOverview": false, - "hideNoTracksActive": false, - "trackSelectorType": "hierarchical", - "showCenterLine": false, - "showCytobandsSetting": true, - "trackLabels": "hidden", - "showGridlines": true, - "showBookmarkHighlights": true, - "showBookmarkLabels": true - } - ], - "sessionTracks": [], - "sessionAssemblies": [], - "temporaryAssemblies": [], - "connectionInstances": [], - "sessionConnections": [], - "focusedViewId": "n-7YuEPiR5QUtHntU-xcO", - "sessionPlugins": [] - } - } - - - """ - tracks_data = [] - - # TODO using the default session for now, but check out session specs in the future https://github.com/GMOD/jbrowse-components/issues/2708 - - # We need to know the track type from the config.json generated just before - track_types = {} - with open(self.config_json_file, "r") as config_file: - config_json = json.load(config_file) - if self.config_json: - config_json.update(self.config_json) - - for track_conf in self.tracksToAdd: - tId = track_conf["trackId"] - track_types[tId] = track_conf["type"] - style_data = default_data["style"][tId] - logging.warn( - "### defsession for %s got style_data=%s given default_data %s" - % (tId, style_data, default_data) - ) - if "displays" in track_conf: - disp = track_conf["displays"][0]["type"] - style_data["type"] = disp - - style_data["configuration"] = "%s-%s" % (tId, disp) - if track_conf.get("style_labels", None): - # TODO fix this: it should probably go in a renderer block (SvgFeatureRenderer) but still does not work - # TODO move this to per track displays? - style_data["labels"] = track_conf["style_labels"] - tracks_data.append( - { - "type": track_types[tId], - "configuration": tId, - "displays": [style_data], - } - ) - - # The view for the assembly we're adding - view_json = {"type": "LinearGenomeView", "tracks": tracks_data} - - refName = None - drdict = { - "reversed": False, - "assemblyName": self.genome_name, - "start": 1, - "end": 200000, - "refName": "x", - } - - if default_data.get("defaultLocation", ""): - ddl = default_data["defaultLocation"] - loc_match = re.search(r"^([^:]+):([\d,]*)\.*([\d,]*)$", ddl) - # allow commas like 100,000 but ignore as integer - if loc_match: - refName = loc_match.group(1) - drdict["refName"] = refName - if loc_match.group(2) > "": - drdict["start"] = int(loc_match.group(2).replace(",", "")) - if loc_match.group(3) > "": - drdict["end"] = int(loc_match.group(3).replace(",", "")) - else: - logging.info( - "@@@ regexp could not match contig:start..end in the supplied location %s - please fix" - % ddl - ) - else: - drdict["refName"] = self.genome_firstcontig - if drdict.get("refName", None): - # TODO displayedRegions is not just zooming to the region, it hides the rest of the chromosome - view_json["displayedRegions"] = [ - drdict, - ] - - logging.info("@@@ defaultlocation %s for default session" % drdict) - else: - logging.info( - "@@@ no contig name found for default session - please add one!" - ) - session_name = default_data.get("session_name", "New session") - for key, value in mapped_chars.items(): - session_name = session_name.replace(value, key) - # Merge with possibly existing defaultSession (if upgrading a jbrowse instance) - session_json = {} - if "defaultSession" in config_json: - session_json = config_json["defaultSession"] - - session_json["name"] = session_name - - if "views" not in session_json: - session_json["views"] = [] - - session_json["views"].append(view_json) - - config_json["defaultSession"] = session_json - self.config_json.update(config_json) - - with open(self.config_json_file, "w") as config_file: - json.dump(self.config_json, config_file, indent=2) - - def add_general_configuration(self, data): - """ - Add some general configuration to the config.json file - """ - - config_path = self.config_json_file - if os.path.exists(config_path): - with open(config_path, "r") as config_file: - config_json = json.load(config_file) - else: - config_json = {} - if self.config_json: - config_json.update(self.config_json) - config_data = {} - - config_data["disableAnalytics"] = data.get("analytics", "false") == "true" - - config_data["theme"] = { - "palette": { - "primary": {"main": data.get("primary_color", "#0D233F")}, - "secondary": {"main": data.get("secondary_color", "#721E63")}, - "tertiary": {"main": data.get("tertiary_color", "#135560")}, - "quaternary": {"main": data.get("quaternary_color", "#FFB11D")}, - }, - "typography": {"fontSize": int(data.get("font_size", 10))}, - } - if not config_json.get("configuration", None): - config_json["configuration"] = {} - config_json["configuration"].update(config_data) - self.config_json.update(config_json) - with open(config_path, "w") as config_file: - json.dump(self.config_json, config_file, indent=2) - - def clone_jbrowse(self, realclone=True): - """Clone a JBrowse directory into a destination directory. This also works in Biocontainer testing now""" - dest = self.outdir - if realclone: - self.subprocess_check_call( - ["jbrowse", "create", dest, "-f", "--tag", f"{JB2VER}"] - ) - else: - shutil.copytree(self.jbrowse2path, dest, dirs_exist_ok=True) - for fn in [ - "asset-manifest.json", - "favicon.ico", - "robots.txt", - "umd_plugin.js", - "version.txt", - "test_data", - ]: - cmd = ["rm", "-rf", os.path.join(dest, fn)] - self.subprocess_check_call(cmd) - cmd = ["cp", os.path.join(INSTALLED_TO, "jb2_webserver.py"), dest] - self.subprocess_check_call(cmd) - - -def parse_style_conf(item): - if "type" in item.attrib and item.attrib["type"] in [ - "boolean", - "integer", - ]: - if item.attrib["type"] == "boolean": - return item.text in ("yes", "true", "True") - elif item.attrib["type"] == "integer": - return int(item.text) - else: - return item.text - - -if __name__ == "__main__": - parser = argparse.ArgumentParser(description="", epilog="") - parser.add_argument("--xml", help="Track Configuration") - parser.add_argument( - "--jbrowse2path", help="Path to JBrowse2 directory in biocontainer or Conda" - ) - parser.add_argument("--outdir", help="Output directory", default="out") - parser.add_argument("--version", "-V", action="version", version="%(prog)s 2.0.1") - args = parser.parse_args() - tree = ET.parse(args.xml) - root = tree.getroot() - - # This should be done ASAP - GALAXY_INFRASTRUCTURE_URL = root.find("metadata/galaxyUrl").text - # Sometimes this comes as `localhost` without a protocol - if not GALAXY_INFRASTRUCTURE_URL.startswith("http"): - # so we'll prepend `http://` and hope for the best. Requests *should* - # be GET and not POST so it should redirect OK - GALAXY_INFRASTRUCTURE_URL = "http://" + GALAXY_INFRASTRUCTURE_URL - jc = JbrowseConnector( - outdir=args.outdir, - jbrowse2path=args.jbrowse2path, - genomes=[ - { - "path": x.attrib["path"], - "label": x.attrib["label"], - "useuri": x.attrib["useuri"], - "meta": metadata_from_node(x.find("metadata")), - } - for x in root.findall("metadata/genomes/genome") - ], - ) - jc.process_genomes() - - # .add_default_view() replace from https://github.com/abretaud/tools-iuc/blob/jbrowse2/tools/jbrowse2/jbrowse2.py - default_session_data = { - "visibility": { - "default_on": [], - "default_off": [], - }, - "style": {}, - "style_labels": {}, - } - for track in root.findall("tracks/track"): - track_conf = {} - track_conf["trackfiles"] = [] - - is_multi_bigwig = False - try: - if track.find("options/wiggle/multibigwig") and ( - track.find("options/wiggle/multibigwig").text == "True" - ): - is_multi_bigwig = True - multi_bigwig_paths = [] - except KeyError: - pass - - trackfiles = track.findall("files/trackFile") - if trackfiles: - for x in track.findall("files/trackFile"): - track_conf["label"] = x.attrib["label"] - track_conf["useuri"] = x.attrib["useuri"] - if is_multi_bigwig: - multi_bigwig_paths.append( - ( - x.attrib["label"], - x.attrib["useuri"], - os.path.realpath(x.attrib["path"]), - ) - ) - else: - if trackfiles: - metadata = metadata_from_node(x.find("metadata")) - track_conf["dataset_id"] = metadata["dataset_id"] - if x.attrib["useuri"].lower() == "yes": - tfa = ( - x.attrib["path"], - x.attrib["ext"], - x.attrib["useuri"], - x.attrib["label"], - metadata, - ) - else: - tfa = ( - os.path.realpath(x.attrib["path"]), - x.attrib["ext"], - x.attrib["useuri"], - x.attrib["label"], - metadata, - ) - track_conf["trackfiles"].append(tfa) - - if is_multi_bigwig: - metadata = metadata_from_node(x.find("metadata")) - - track_conf["trackfiles"].append( - ( - multi_bigwig_paths, # Passing an array of paths to represent as one track - "bigwig_multiple", - "MultiBigWig", # Giving an hardcoded name for now - {}, # No metadata for multiple bigwig - ) - ) - track_conf["category"] = track.attrib["cat"] - track_conf["format"] = track.attrib["format"] - if track.find("options/style"): - track_conf["style"] = { - item.tag: parse_style_conf(item) for item in track.find("options/style") - } - else: - track_conf["style"] = {} - tst = track_conf["style"].get("type", None) - if tst: - track_conf["style"]["configuration"] = "%s-%s" % (track_conf["label"], tst) - logging.warn("### got %s for track style" % track_conf["style"]) - if track.find("options/style_labels"): - track_conf["style_labels"] = { - item.tag: parse_style_conf(item) - for item in track.find("options/style_labels") - } - track_conf["conf"] = etree_to_dict(track.find("options")) - track_conf["category"] = track.attrib["cat"] - track_conf["format"] = track.attrib["format"] - keys = jc.process_annotations(track_conf) - - if keys: - for key in keys: - default_session_data["visibility"][ - track.attrib.get("visibility", "default_off") - ].append(key) - if track_conf.get("style", None): - default_session_data["style"][key] = track_conf["style"] - if track_conf.get("style_labels", None): - default_session_data["style_labels"][key] = track_conf.get( - "style_labels", None - ) - logging.warn( - "# after process, key=%s def session style = %s" - % (key, default_session_data["style"][key]) - ) - default_session_data["defaultLocation"] = root.find( - "metadata/general/defaultLocation" - ).text - default_session_data["session_name"] = root.find( - "metadata/general/session_name" - ).text - jc.zipOut = root.find("metadata/general/zipOut").text == "true" - general_data = { - "analytics": root.find("metadata/general/analytics").text, - "primary_color": root.find("metadata/general/primary_color").text, - "secondary_color": root.find("metadata/general/secondary_color").text, - "tertiary_color": root.find("metadata/general/tertiary_color").text, - "quaternary_color": root.find("metadata/general/quaternary_color").text, - "font_size": root.find("metadata/general/font_size").text, - } - jc.add_general_configuration(general_data) - trackconf = jc.config_json.get("tracks", None) - if trackconf: - jc.config_json["tracks"].update(jc.tracksToAdd) - else: - jc.config_json["tracks"] = jc.tracksToAdd - jc.write_config() - jc.add_default_session(default_session_data) - logging.warn("### got default_session_data=%s" % default_session_data) - # jc.text_index() not sure what broke here.
--- a/jbrowse2broken.xml Tue Mar 26 00:52:34 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,961 +0,0 @@ - <tool id="jbrowse2" name="jbrowse2" version="@TOOL_VERSION@+@WRAPPER_VERSION@_7" profile="22.05"> - <description>genome browser</description> - <macros> - <import>macros.xml</import> - </macros> - <expand macro="edamInc"/> - <xrefs> - <xref type="bio.tools">jbrowse2</xref> - </xrefs> - <expand macro="requirements"/> - <version_command>python '${__tool_directory__}/jbrowse2.py' --version</version_command> - <command detect_errors="aggressive"><![CDATA[ -mkdir -p '$output.files_path' && -## Copy the XML file into the directory, mostly for debugging -## but nice if users want to reproduce locally -cp '$trackxml' '$output.files_path/galaxy.xml' && - -export JBROWSE2_PATH=\$(dirname \$(which jbrowse))/../opt/jbrowse2 && - -#if $jbgen.ucol.formcoll=="collect": - python '$__tool_directory__/autogenJB2.py' - #for $key in $autoCollection.keys(): - #if $autoCollection[$key].is_collection: - #set subCol=$autoCollection[$key] - #set pafs=[($subCol[x],$subcol[x].ext,x) for x in $subCol.keys() if $subCol[x].ext == 'paf'] - #if len($pafs) > 0: - --pafmeta '$pafs[0]' - #set refs = [($pafs[0][2],$subCol[x],x) for x in $subCol.keys() if $subCol[x].ext == 'fasta'] - #for $ref in $refs: - --pafreferencemeta '$ref' - #end for - #end if - #else if $autoCollection[$key].ext == 'fasta': - --referencemeta '$autoCollection[$key],$autoCollection[$key].ext,$key' - #else if $autoCollection[$key].ext in ['bed', 'bigwig', 'cool', 'gff', 'gff3', 'hic', 'maf', 'mcool', 'scool', 'vcf'] - --trackmeta '$autoCollection[$key],$autoCollection[$key].ext,$key' - #else if $autoCollection[$key].ext in ['bam',] - --trackmeta '$autoCollection[$key],$autoCollection[$key].ext,$key,$autoCollection[$key].metadata.bam_index' - #else if $autoCollection[$key].ext in ['cram',] - --trackmeta '$autoCollection[$key],$autoCollection[$key].ext,$key,$autoCollection[$key].metadata.cram_index' - #end if - #end for - --outdir '$output.files_path' - --jbrowse2path \${JBROWSE2_PATH} - --sessName "Autogen JBrowse" && - #if $jbgen.zipOut == "true": - (cd '$output.files_path' && zip -r - . ) > '$output' - #else - cp '$output.files_path/index.html' '$output' - #end if -#else: - python '$__tool_directory__/jbrowse2.py' - --jbrowse2path \${JBROWSE2_PATH} - --outdir '$output.files_path' - --xml '$trackxml' && - #if $jbgen.zipOut == "true": - (cd '$output.files_path' && zip -r - . ) > '$output' - #else - cp '$output.files_path/index.html' '$output' - #end if - ## Ugly testing hack since I cannot get <extra_files> to test the files I want to test. Hmph. - #if str($uglyTestingHack) == "enabled": - && cp '$trackxml' '$output' - #end if -#end if - ]]></command> -<configfiles> - <configfile name="trackxml"><![CDATA[<?xml version="1.0"?> -#if $jbgen.ucol.formcoll=="form": -<root> - <metadata> - <genomes> - #if str($reference_genome.genome_type_select) == "uri": - <genome path="${reference_genome.uri}" label="${reference_genome.refname}" useuri="yes"> - <metadata> - <dataset - dname = "${reference_genome.refname}" /> - </metadata> - </genome> - #else if str($reference_genome.genome_type_select) == "indexed": - <genome path="${reference_genome.genome.fields.path}" label="${reference_genome.genome.fields.name}" useuri="no"> - <metadata> - <dataset - dname = "${reference_genome.genome.fields.name}" /> - </metadata> - </genome> - #else - <genome path="$reference_genome.genome" label="${reference_genome.genome.name}" useuri="no"> - <metadata> - <dataset id="${__app__.security.encode_id($reference_genome.genome.id)}" hid="${reference_genome.genome.hid}" - size="${reference_genome.genome.get_size(nice_size=True)}" - edam_format="${reference_genome.genome.datatype.edam_format}" - file_ext="${reference_genome.genome.ext}" - dname = "${reference_genome.genome.name}" /> - <history id="${__app__.security.encode_id($reference_genome.genome.history_id)}" - #if $reference_genome.genome.history.user: - user_email="${reference_genome.genome.history.user.email}" - user_id="${reference_genome.genome.history.user_id}" - display_name="${reference_genome.genome.history.get_display_name()}"/> - #else - user_email="anonymous" - user_id="-1" - display_name="Unnamed History"/> - #end if - <metadata - #for (key, value) in $reference_genome.genome.get_metadata().items(): - #if "_types" not in $key: - #if isinstance($value, list): - #set value_str = "[%s]" % ','.join([str(val) for val in value]) - ${key}="$value_str" - #else - ${key}="${value}" - #end if - #end if - #end for - /> - <tool - tool_id="${reference_genome.genome.creating_job.tool_id}" - tool_version="${reference_genome.genome.creating_job.tool_version}" - /> - </metadata> - </genome> - #end if - </genomes> - <general> - <defaultLocation>${jbgen.defaultLocation}</defaultLocation> - <zipOut>${jbgen.zipOut}</zipOut> - <analytics>${jbgen.enableAnalytics}</analytics> - <primary_color>${jbgen.primary_color}</primary_color> - <secondary_color>${jbgen.secondary_color}</secondary_color> - <tertiary_color>${jbgen.tertiary_color}</tertiary_color> - <quaternary_color>${jbgen.quaternary_color}</quaternary_color> - <font_size>${jbgen.font_size}</font_size> - <session_name>${jbgen.session_name}</session_name> - </general> - <galaxyUrl>${__app__.config.galaxy_infrastructure_url}</galaxyUrl> - </metadata> - <tracks> - #for $tg in $track_groups: - #for $track in $tg.data_tracks: - #if $track.data_format.useuri.insource == "uri": - <track cat="${tg.category}" format="${track.data_format.data_format_select}" visibility="${track.data_format.track_visibility}"> - <files> - <trackFile path="${track.data_format.useuri.annouri}" ext="${track.data_format.data_format_select}" label="${track.data_format.useuri.annoname}" useuri="yes"> - <metadata> - <dataset id = "${track.data_format.useuri.annouri}" /> - </metadata> - </trackFile> - </files> - <options/> - </track> - #else if $track.data_format.useuri.insource == "history": - #if $track.data_format.useuri.annotation: - <track cat="${tg.category}" format="${track.data_format.data_format_select}" visibility="${track.data_format.track_visibility}"> - <files> - #for $dataset in $track.data_format.useuri.annotation: - <trackFile path="${dataset}" ext="${dataset.ext}" label="${dataset.name}" useuri="no"> - <metadata> - - <dataset id="${__app__.security.encode_id($dataset.id)}" hid="${dataset.hid}" - size="${dataset.get_size(nice_size=True)}" - edam_format="${dataset.datatype.edam_format}" - file_ext="${dataset.ext}" /> - <history id="${__app__.security.encode_id($dataset.history_id)}" - #if $dataset.history.user: - user_email="${dataset.history.user.email}" - user_id="${dataset.history.user_id}" - display_name="${dataset.history.get_display_name()}"/> - #else - user_email="anonymous" - user_id="-1" - display_name="Unnamed History"/> - #end if - - <metadata - #for (key, value) in $dataset.get_metadata().items(): - #if "_types" not in $key and $value is not None and len(str($value)) < 5000: - #if isinstance($value, list): - #set value_str = "[%s]" % ','.join([str(val) for val in value]) - ${key}="$value_str" - #else - ${key}="${value}" - #end if - #end if - #end for - /> - <tool - tool_id="${dataset.creating_job.tool_id}" - tool_version="${dataset.creating_job.tool_version}" - /> - </metadata> - </trackFile> - #end for - </files> - - <options> - <style> - #if str($track.data_format.data_format_select) in ["gff", "bed", "paf", "blastxml"]: - <type>${track.data_format.jbstyle.track_style.display}</type> - #if str($track.data_format.jbstyle.track_style.display) in ["LinearBasicDisplay"]: - <trackShowLabels>${track.data_format.jbstyle.track_style.show_labels}</trackShowLabels> - <trackShowDescriptions>${track.data_format.jbstyle.track_style.show_descriptions}</trackShowDescriptions> - #end if - #end if - #if str($track.data_format.data_format_select) in ["bam", "cram"]: - <type>"LinearAlignmentsDisplay"</type> - #end if - </style> - #if str($track.data_format.data_format_select) == "bam": - <bam> - #for $dataset in $track.data_format.useuri.annotation: - <bam_index>${dataset.metadata.bam_index}</bam_index> - #end for - </bam> - #else if str($track.data_format.data_format_select) == "cram": - <cram> - #for $dataset in $track.data_format.useuri.annotation: - <cram_index>${dataset.metadata.cram_index}</cram_index> - #end for - </cram> - #else if str($track.data_format.data_format_select) == "blastxml": - <blast> - #if str($track.data_format.blast_parent) != "": - <parent>${track.data_format.blast_parent}</parent> - #end if - <protein>${track.data_format.is_protein}</protein> - <min_gap>${track.data_format.min_gap}</min_gap> - </blast> - #else if str($track.data_format.data_format_select) == "gff": - <gff> - #if $track.data_format.match_part.match_part_select == "true": - <match>${track.data_format.match_part.name}</match> - #end if - </gff> - #else if str($track.data_format.data_format_select) == "paf": - <paf> - <genome> - #for gnome in $track.data_format.synteny_genome: - $gnome, - #end for - </genome> - <genome_label> - #for gnome in $track.data_format.synteny_genome: - $gnome.name, - #end for - </genome_label> - </paf> - #else if str($track.data_format.data_format_select) == "hic": - <hic> - </hic> - #else if str($track.data_format.data_format_select) == "cool": - <cool> - </cool> - #else if str($track.data_format.data_format_select) == "bed": - <bed> - </bed> - #else if str($track.data_format.data_format_select) == "sparql": - <label>${track.data_format.label}</label> - <sparql> - <url>${track.data_format.url}</url> - <query>${track.data_format.query}</query> - <query_refnames>${track.data_format.query_refnames}</query_refnames> - </sparql> - #end if - </options> - </track> - #end if - #end if - #end for - #end for - </tracks> -</root> -#end if -]]></configfile> - </configfiles> - - <inputs> - <conditional name="reference_genome"> - <param help="Built-in references" label="Reference genome to display" name="genome_type_select" type="select"> - <option selected="True" value="indexed">Use a built-in genome</option> - <option value="history">Use a genome from history</option> - <option value="uri">URI for a reference in tabix .gz format </option> - </param> - <when value="indexed"> - <param - help="If your genome of interest is not listed, contact the Galaxy team" - label="Select a reference genome" - name="genome" - type="select" - optional="true"> - <options from_data_table="all_fasta"> - <filter column="2" type="sort_by"/> - <validator message="No genomes are available for the selected input dataset" type="no_options"> - </validator> - </options> - </param> - </when> - <when value="history"> - <param - format="fasta" - label="Select the reference genome" - name="genome" - type="data" - optional="true"> - </param> - </when> - <when value="uri"> - <param - label="URI pointing to tabix compressed fasta" - name="uri" - type="text"> - </param> - <param - label="Reference key - dbkey equivalent" - name="refname" - type="text"> - </param> - </when> - </conditional> - - <repeat name="track_groups" title="Track Group"> - <param label="Track Category" - name="category" - type="text" - value="Default" - help="Organise your tracks into Categories for a nicer end-user experience. You can use #date# and it will be replaced with the current date in 'yyyy-mm-dd' format, which is very useful for repeatedly updating a JBrowse instance when member databases / underlying tool versions are updated." optional="False"/> - <repeat name="data_tracks" title="Annotation Track"> - <conditional name="data_format" label="Track Data Selection Options"> - <param type="select" label="Track Type" name="data_format_select"> - <option value="bam">BAM Pileup track</option> - <option value="bed">BED track</option> - <option value="bigwig">BigWig track</option> - <option value="blastxml">Blast XML track - converted to GFF</option> - <option value="cool">HiC as cool/mcool/scool format files</option> - <option value="cram">CRAM</option> - <option value="gff">GFF/GFF3 feature track</option> - <option value="hic">HiC as juicebox_hic format file. Tabular hic_matrix will NOT work.</option> - <option value="maf">Multiple alignment format. Reference name must match the MAF name exactly to work correctly</option> - <option value="paf">PAF - approximate mapping positions between two set of sequences</option> - <option value="vcf">VCF SNP</option> - </param> - <when value="blastxml"> - <expand macro="input_conditional" label="BlastXML Track Data" format="blastxml" /> - - <param label="Features used in Blast Search" - help="in GFF3. This is used so we know where to map features. E.g. where results of which CDS Protein32 match up to. The query IDs in your blast results should MATCH some feature IDs in your GFF3 file. This is an optional field and is most useful if using JBrowse to display protein blast results on a DNA genome. blastn results don't need this, blastp results on a protein sequence don't need this." - format="gff3" - name="blast_parent" - optional="true" - type="data"/> - - <param label="Minimum Gap Size" - help="before a new match_part feature is created" - name="min_gap" - type="integer" - value="10" - min="2" /> - <param label="Is this a protein blast search?" - type="boolean" - name="is_protein" - truevalue="true" - falsevalue="false" /> - <expand macro="track_styling_feature" /> - <expand macro="track_visibility" /> - </when> - <when value="vcf"> - <expand macro="input_conditional" label="SNP Track Data" format="vcf,vcf_bgzip" /> - <expand macro="track_styling_vcf"/> - <expand macro="track_visibility" /> - </when> - <when value="gff"> - <expand macro="input_conditional" label="GFF/GFF3 Track Data" format="gff,gff3" /> - <conditional name="match_part" label="match/match_part data"> - <param help="Match part data selection " label="This is match/match_part data" name="match_part_select" type="select"> - <option selected="True" value="false">Not match/match part data</option> - <option value="true">Match/match part data</option> - </param> - <when value="true"> - <param label="Match Part Feature Type" - name="name" - type="text" - value="match" - help="Match_parts have options for the parent feature type, such as cDNA_match, match, translated_nucleotide_match, etc. Please select the appropriate one here. You can leave empty to try autodetection (only works with CanvasFeatures track type)." - optional="True"/> - </when> - <when value="false" /> - </conditional> - <expand macro="track_styling_feature" /> - <expand macro="track_visibility" /> - </when> - <when value="bam"> - <expand macro="input_conditional" label="BAM Track Data" format="bam" /> - <expand macro="track_styling_feature" /> - <expand macro="track_visibility" /> - </when> - <when value="bed"> - <expand macro="input_conditional" label="BED Track Data" format="bed" /> - <expand macro="track_styling_feature" /> - <expand macro="track_visibility" /> - </when> - <when value="cram"> - <expand macro="input_conditional" label="CRAM Track Data" format="cram" /> - <expand macro="track_styling_feature" /> - <expand macro="track_visibility" /> - </when> - <when value="maf"> - <expand macro="input_conditional" label="MAF Track Data" format="maf" /> - <expand macro="track_styling_feature" /> - <expand macro="track_visibility" /> - </when> - <when value="bigwig"> - <expand macro="input_conditional" label="BigWig Track Data" format="bigwig" /> - <expand macro="track_styling_bigwig" /> - <expand macro="track_visibility" /> - </when> - <when value="paf"> - <param label="Comparison genome sequence" help="Paf from these as the reference(s), using the common reference as the reads to map" - format="fasta" - name="synteny_genome" - type="data" - multiple="True"/> - <expand macro="input_conditional" label="Synteny data" format="paf" - help="Make paf with mashmap or minimap2 mapping real reference onto desired syntenic references"/> - <expand macro="track_styling_feature" /> - <expand macro="track_visibility" /> - </when> - - <when value="hic"> - <expand macro="input_conditional" label="Binary Juicebox HiC data" format="hic,juicebox_hic" /> - <expand macro="track_visibility" /> - </when> - <when value="cool"> - <expand macro="input_conditional" label="HiC data in cool/mcool/scool format" format="cool,mcool,scool" /> - <expand macro="track_visibility" /> - </when> - </conditional> - </repeat> - </repeat> - - <expand macro="general_options" /> - - <param type="hidden" name="uglyTestingHack" value="" /> - </inputs> - <outputs> - <data format="html" name="output" label="JBrowse2"> - <change_format> - <when input="zipOut" value="true" format="zip" /> - </change_format> - </data> - </outputs> - <tests> - <test> - <param name="reference_genome|genome_type_select" value="history"/> - <param name="reference_genome|genome" value="merlin.fa"/> - <repeat name="track_groups"> - <param name="category" value="Default" /> - <repeat name="data_tracks"> - <conditional name="data_format"> - <param name="data_format_select" value="bigwig"/> - <conditional name="useuri"> - <param name="annotation" value="bw/merlin.bw"/> - <param name="insource" value="history"/> - </conditional> - </conditional> - </repeat> - </repeat> - <param name="uglyTestingHack" value="enabled" /> - <output name="output"> - <assert_contents> - <has_text text="genome path="></has_text> - <has_text text="dataset id="></has_text> - <has_text text="history id="></has_text> - <has_text text="metadata"></has_text> - <has_text text="tool_id"></has_text> - <has_text text="trackFile path="></has_text> - <has_text text="file_ext="bigwig""></has_text> - <has_text text="format="bigwig""></has_text> - </assert_contents> - </output> - </test> - <test> - <param name="reference_genome|genome_type_select" value="history"/> - <param name="reference_genome|genome" value="merlin.fa"/> - <repeat name="track_groups"> - <param name="category" value="Default" /> - <repeat name="data_tracks"> - <conditional name="data_format"> - <param name="data_format_select" value="vcf"/> - <conditional name="useuri"> - <param name="insource" value="history"/> - <param name="annotation" value="vcf/merlin.vcf"/> - </conditional> - </conditional> - </repeat> - </repeat> - <param name="uglyTestingHack" value="enabled" /> - <output name="output"> - <assert_contents> - <has_text text="genome path="></has_text> - <has_text text="dataset id="></has_text> - <has_text text="history id="></has_text> - <has_text text="metadata"></has_text> - <has_text text="tool_id"></has_text> - <has_text text="trackFile path="></has_text> - <has_text text="ext="vcf" label="merlin.vcf""></has_text> - </assert_contents> - </output> - </test> - <test> - <param name="reference_genome|genome_type_select" value="history"/> - <param name="reference_genome|genome" value="merlin.fa"/> - <param name="uglyTestingHack" value="enabled" /> - <output name="output"> - <assert_contents> - <has_text text="genome path="></has_text> - <has_text text="dataset id="></has_text> - <has_text text="history id="></has_text> - <has_text text="metadata"></has_text> - <has_text text="tool_id"></has_text> - </assert_contents> - </output> - </test> - <test> - <param name="reference_genome|genome_type_select" value="history"/> - <param name="reference_genome|genome" value="merlin.fa"/> - <repeat name="track_groups"> - <param name="category" value="Default" /> - <repeat name="data_tracks"> - <conditional name="data_format"> - <param name="data_format_select" value="bed"/> - <conditional name="useuri"> - <param name="insource" value="history"/> - <param name="annotation" value="bed/test-3.bed"/> - </conditional> - </conditional> - </repeat> - </repeat> - <param name="uglyTestingHack" value="enabled" /> - <output name="output"> - <assert_contents> - <has_text text="genome path="></has_text> - <has_text text="dataset id="></has_text> - <has_text text="history id="></has_text> - <has_text text="metadata"></has_text> - <has_text text="tool_id"></has_text> - <has_text text="trackFile path="></has_text> - <has_text text="ext="bed" label="test-3.bed""></has_text> - </assert_contents> - </output> - </test> - <test> - <param name="reference_genome|genome_type_select" value="history"/> - <param name="reference_genome|genome" value="merlin.fa"/> - <repeat name="track_groups"> - <param name="category" value="Auto Coloured" /> - <repeat name="data_tracks"> - <conditional name="data_format"> - <param name="data_format_select" value="gff"/> - <conditional name="useuri"> - <param name="insource" value="history"/> - <param name="annotation" value="gff3/A.gff"/> - </conditional> - <conditional name="match_part"> - <param name="match_part_select" value="false"/> - </conditional> - <section name="jbcolor_scale"> - <conditional name="color_score"> - <param name="color_score_select" value="none"/> - </conditional> - <conditional name="color"> - <param name="color_select" value="automatic"/> - </conditional> - </section> - </conditional> - </repeat> - </repeat> - - <repeat name="track_groups"> - <param name="category" value="Ignore Scale" /> - <repeat name="data_tracks"> - <conditional name="data_format"> - <param name="data_format_select" value="gff"/> - <conditional name="useuri"> - <param name="insource" value="history"/> - <param name="annotation" value="gff3/1.gff"/> - </conditional> - <conditional name="match_part"> - <param name="match_part_select" value="false"/> - </conditional> - <section name="jbcolor_scale"> - <conditional name="color_score"> - <param name="color_score_select" value="none"/> - <conditional name="color"> - <param name="color_select" value="manual"/> - <param name="style_color" value="#ff00ff"/> - </conditional> - </conditional> - </section> - </conditional> - </repeat> - </repeat> - - <repeat name="track_groups"> - <param name="category" value="Scaled Colour" /> - <repeat name="data_tracks"> - <conditional name="data_format"> - <param name="data_format_select" value="gff"/> - <conditional name="useuri"> - <param name="insource" value= "history"/> - <param name="annotation" value="gff3/C.gff"/> - </conditional> - <conditional name="match_part"> - <param name="match_part_select" value="false"/> - </conditional> - <section name="jbcolor_scale"> - <conditional name="color_score"> - <param name="color_score_select" value="score"/> - <param name="score_scaling" value="linear"/> - <conditional name="score_scales"> - <param name="scale_select" value="automatic"/> - </conditional> - <conditional name="color_scheme"> - <param name="score_scheme" value="opacity"/> - <conditional name="color"> - <param name="color_select" value="automatic"/> - </conditional> - </conditional> - </conditional> - </section> - </conditional> - </repeat> - <repeat name="data_tracks"> - <conditional name="data_format"> - <param name="data_format_select" value="gff"/> - <conditional name="useuri"> - <param name="annotation" value="gff3/B.gff"/> - <param name="insource" value= "history"/> - </conditional> - <conditional name="match_part"> - <param name="match_part_select" value="false"/> - </conditional> - <section name="jbcolor_scale"> - <conditional name="color_score"> - <param name="color_score_select" value="score"/> - <param name="score_scaling" value="linear"/> - <conditional name="score_scales"> - <param name="scale_select" value="automatic"/> - </conditional> - <conditional name="color_scheme"> - <param name="score_scheme" value="opacity"/> - <conditional name="color"> - <param name="color_select" value="manual"/> - <param name="style_color" value="#0000ff"/> - </conditional> - </conditional> - </conditional> - </section> - </conditional> - </repeat> - <repeat name="data_tracks"> - <conditional name="data_format"> - <param name="data_format_select" value="gff"/> - <conditional name="useuri"> - <param name="annotation" value="gff3/A.gff"/> - <param name="insource" value= "history"/> - </conditional> - <conditional name="match_part"> - <param name="match_part_select" value="false"/> - </conditional> - <section name="jbcolor_scale"> - <conditional name="color_score"> - <param name="color_score_select" value="score"/> - <param name="score_scaling" value="linear"/> - <conditional name="score_scales"> - <param name="scale_select" value="manual"/> - <param name="minimum" value="0"/> - <param name="maximum" value="1000"/> - </conditional> - <conditional name="color_scheme"> - <param name="score_scheme" value="opacity"/> - <conditional name="color"> - <param name="color_select" value="automatic"/> - </conditional> - </conditional> - </conditional> - </section> - </conditional> - </repeat> - <repeat name="data_tracks"> - <conditional name="data_format"> - <param name="data_format_select" value="gff"/> - <conditional name="useuri"> - <param name="annotation" value="gff3/1.gff"/> - <param name="insource" value= "history"/> - </conditional> - <conditional name="match_part"> - <param name="match_part_select" value="false"/> - </conditional> - <section name="jbcolor_scale"> - <conditional name="color_score"> - <param name="color_score_select" value="score"/> - <param name="score_scaling" value="linear"/> - <conditional name="score_scales"> - <param name="scale_select" value="manual"/> - <param name="minimum" value="0"/> - <param name="maximum" value="1000"/> - </conditional> - <conditional name="color_scheme"> - <param name="score_scheme" value="opacity"/> - <conditional name="color"> - <param name="color_select" value="manual"/> - <param name="style_color" value="#ff0000"/> - </conditional> - </conditional> - </conditional> - </section> - </conditional> - </repeat> - </repeat> - - <repeat name="track_groups"> - <param name="category" value="Realistic" /> - <repeat name="data_tracks"> - <conditional name="data_format"> - <param name="data_format_select" value="gff"/> - <conditional name="useuri"> - <param name="annotation" value="gff3/interpro.gff"/> - <param name="insource" value= "history"/> - </conditional> - <conditional name="match_part"> - <param name="match_part_select" value="false"/> - </conditional> - <section name="jbcolor_scale"> - <conditional name="color_score"> - <param name="color_score_select" value="none"/> - </conditional> - <conditional name="color"> - <param name="color_select" value="automatic"/> - </conditional> - </section> - </conditional> - </repeat> - <repeat name="data_tracks"> - <conditional name="data_format"> - <param name="data_format_select" value="gff"/> - <conditional name="useuri"> - <param name="annotation" value="gff3/2.gff"/> - <param name="insource" value= "history"/> - </conditional> - <conditional name="match_part"> - <param name="match_part_select" value="true"/> - <param name="name" value="cDNA_match"/> - </conditional> - <section name="jbcolor_scale"> - <conditional name="color_score"> - <param name="color_score_select" value="none"/> - </conditional> - <conditional name="color"> - <param name="color_select" value="automatic"/> - </conditional> - </section> - </conditional> - </repeat> - </repeat> - - <param name="uglyTestingHack" value="enabled" /> - <output name="output"> - <assert_contents> - <has_text text="Auto Coloured"/> - <has_text text="A.gff"/> - <has_text text="B.gff"/> - <has_text text="C.gff"/> - <has_text text="interpro.gff"/> - <has_text text="Scaled Colour"/> - <has_text text="1.gff"/> - <has_text text="2.gff"/> - </assert_contents> - </output> - </test> - <test> - <param name="reference_genome|genome_type_select" value="history"/> - <param name="reference_genome|genome" value="merlin.fa"/> - - <repeat name="track_groups"> - <param name="category" value="With menu or index" /> - <repeat name="data_tracks"> - <conditional name="data_format"> - <param name="data_format_select" value="gff"/> - <conditional name="useuri"> - <param name="annotation" value="gff3/1.gff"/> - <param name="insource" value= "history"/> - </conditional> - <conditional name="match_part"> - <param name="match_part_select" value="false"/> - </conditional> - <section name="jbcolor_scale"> - <conditional name="color_score"> - <param name="color_score_select" value="none"/> - </conditional> - <conditional name="color"> - <param name="color_select" value="automatic"/> - </conditional> - </section> - <section name="jbmenu"> - <repeat name="track_menu"> - <param name="menu_action" value="iframeDialog"/> - <param name="menu_label" value="Some menu item"/> - <param name="menu_title" value="Frame title"/> - <param name="menu_url" value="https://example.com/#!/?id={name}&q={type}&z="{end}""/> - <param name="menu_icon" value="dijitIconNewTask"/> - </repeat> - <repeat name="track_menu"> - <param name="menu_action" value="newWindow"/> - <param name="menu_label" value="Another menu item"/> - <param name="menu_title" value="Frame title 2"/> - <param name="menu_url" value="https://example.com/#!/?id={name}&q={type}&z="{end}""/> - </repeat> - </section> - </conditional> - </repeat> - <repeat name="data_tracks"> - <conditional name="data_format"> - <param name="data_format_select" value="gff"/> - <conditional name="useuri"> - <param name="annotation" value="gff3/1.gff"/> - <param name="insource" value= "history"/> - </conditional> - <param name="insource" value= "history"/> - <conditional name="match_part"> - <param name="match_part_select" value="false"/> - </conditional> - <section name="jbcolor_scale"> - <conditional name="color_score"> - <param name="color_score_select" value="none"/> - </conditional> - <conditional name="color"> - <param name="color_select" value="automatic"/> - </conditional> - </section> - </conditional> - </repeat> - </repeat> - - <param name="uglyTestingHack" value="enabled" /> - <output name="output"> - <assert_contents> - <has_text text="With menu or index"/> - <has_text text="gff"/> - </assert_contents> - </output> - </test> - <!-- TODO add a synteny test --> - <!-- TODO add a bam and a cram test --> - <!-- TODO add an hic test --> - <!-- TODO add a vcf_bgzip test --> - </tests> - <help><![CDATA[ - -JBrowse2-in-Galaxy -================== - -JBrowse2-in-Galaxy offers a highly configurable, workflow-compatible -alternative to JBrowse1-in-Galaxy and Trackster. - -Compared to JBrowse1-in-Galaxy, there is no support for alternative codons for unusual genomes, -and detailed track styling is not yet implemented. Send code. -JBrowse1 development has now ceased in favour of JBrowse2. - -Use and local viewing -===================== - - -A JBrowse2 history item can be opened by viewing it (the "eye" icon). - -The same browser data and setup can also be downloaded as a compressed zip archive by clicking the download ("floppy disk") icon in the history. -This can be shared and viewed without Galaxy. - -A replacement application to serve the browser is required without Galaxy. A local python web server can be started using a script included in each archive, -assuming that Python3 is already working on your desktop - if not you will have to install it first. Unzip the archive (*unzip [filename].zip*) and change -directory to the first level in that zip archive. It contains a file named *jb2_webserver.py* - -With python3 installed, - -*python3 jb2_webserver.py* - -will serve the unarchived JBrowse2 configuration from the same directory as the python script automatically. If a new browser window does not open, -but the script appears to be running, try pointing your web browser to the default of *localhost:8080* - -Overview --------- - -JBrowse is a fast, embeddable genome browser built completely with -JavaScript and HTML5. - -The JBrowse-in-Galaxy (JiG) tool was written to help build complex -JBrowse installations straight from Galaxy. It allows you to build up a JBrowse instance without worrying -about how to run the command line tools to format your data, and which -options need to be supplied and where. - -Options -------- - -**Reference or Assembly** - -Choose either a built-in or select one from your history. - -Track coordinates and contig names *must* match this reference precisely -or they will not display. - -**Track Groups** represent a set of tracks in a single category. - -Annotation Tracks ------------------ - -GFF3/BED -~~~~~~~~ - -Standard feature tracks. They usually highlight genes, mRNAs and other features of interest along a genomic region. - -When these contain tens of millions of features, such as repeat regions from a VGP assembly, displaying one at a time leads -to extremely slow loading times when a large region is in view, unless the "LinearPileupDisplay" display option is -selected for that track in the styling options section. The default is LinearBasicDisplay, which shows all details and works -well for relatively sparse bed files. A better option is to make a bigwig track using a set of windows based on the -lengths of each assembly or reference contig. - -BAM Pileups -~~~~~~~~~~~ - -We support BAM files and can automatically generate SNP tracks based on -that bam data. - - -BlastXML -~~~~~~~~ - -JiG now supports both blastn and blastp datasets. JiG internally uses a -blastXML to gapped GFF3 tool to convert your blastxml datasets into a -format amenable to visualization in JBrowse. This tool is also -available separately from the IUC on the toolshed. - -**Minimum Gap Size** reflects how long a gap must be before it becomes a -real gap in the processed gff3 file. In the picture above, various sizes -of gaps can be seen. If the minimum gap size was set much higher, say -100nt, many of the smaller gaps would disappear, and the features on -both sides would be merged into one, longer feature. This setting is -inversely proportional to runtime and output file size. *Do not set this -to a low value for large datasets*. By setting this number lower, you -will have extremely large outputs and extremely long runtimes. The -default was configured based off of the author's experience, but the -author only works on small viruses. It is *strongly* recommended that -you filter your blast results before display, e.g. picking out the top -10 hits or so. - -**Protein blast search** option merely informs underlying tools that -they should adjust feature locations by 3x. - - -@ATTRIBUTION@ -]]></help> - <expand macro="citations"/> -</tool>
--- a/macros.xml Tue Mar 26 00:52:34 2024 +0000 +++ b/macros.xml Thu Mar 28 04:51:06 2024 +0000 @@ -138,6 +138,7 @@ </param> </xml> + <xml name="general_options"> <section name="jbgen" title="General JBrowse Options [Advanced]" expanded="false"> <conditional name="ucol"> @@ -372,7 +373,10 @@ <option value="LinearAlignmentsDisplay" selected="true">LinearAlignmentsDisplay</option> <option value="LinearPileupDisplay">LinearPileupDisplay</option> <option value="LinearSNPCoverageDisplay">LinearSNPCoverageDisplay</option> + <option value="LinearReadArcsDisplay">LinearReadArcsDisplay</option> + <option value="LinearReadCloudDisplay">LinearReadCloudDisplay</option> </param> + <!-- TODO check if possible to handle more options than just the display style--> <when value="LinearAlignmentsDisplay"/> <when value="LinearPileupDisplay"/> <when value="LinearSNPCoverageDisplay"> @@ -380,6 +384,8 @@ <param name="minScore" label="Min score" type="integer" value="" optional="true"/> <param name="maxScore" label="Max score" type="integer" value="" optional="true"/> </when> + <when value="LinearReadArcsDisplay"/> + <when value="LinearReadCloudDisplay"/> </conditional> </section> </xml> @@ -389,10 +395,12 @@ <conditional name="track_style"> <param name="display" type="select" label="Display style" help="How the track will be displayed by default"> <option value="LinearVariantDisplay" selected="true">LinearVariantDisplay</option> + <option value="LinearPairedArcDisplay">LinearPairedArcDisplay</option> </param> <when value="LinearVariantDisplay"> <expand macro="track_styling_linear"/> </when> + <when value="LinearPairedArcDisplay"/> </conditional> </section> </xml> @@ -430,6 +438,7 @@ </section> </xml> + <!-- TODO use this --> <xml name="track_menu"> <section name="jbmenu" title="JBrowse Contextual Menu options [Advanced]" expanded="false"> <repeat name="track_menu" title="Track Menu">
--- a/macrosbroken.xml Tue Mar 26 00:52:34 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,548 +0,0 @@ -<?xml version="1.0"?> -<macros> - <token name="@TOOL_VERSION@">2.10.1</token> - <xml name = "edamInc"> - <edam_topics> - <edam_topic>topic_3307</edam_topic> - <edam_topic>topic_0092</edam_topic> - </edam_topics> - <edam_operations> - <edam_operation>operation_0573</edam_operation> - <edam_operation>operation_0564</edam_operation> - </edam_operations> - </xml> - <xml name="requirements"> - <requirements> - <requirement type="package" version="@TOOL_VERSION@">jbrowse2</requirement> - <requirement type="package" version="1.81">biopython</requirement> - <requirement type="package" version="0.7.1">bcbio-gff</requirement> - <requirement type="package" version="1.19">samtools</requirement> - <requirement type="package" version="6.0.1">pyyaml</requirement> - <requirement type="package" version="1.11">tabix</requirement> - <requirement type="package" version="4.6.0">findutils</requirement> - <requirement type="package" version="0.0.8">hictk</requirement> - <yield/> - </requirements> - </xml> - <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token> - <token name="@WRAPPER_VERSION@">galaxy2</token> - <token name="@ATTRIBUTION@"><![CDATA[ -**Attribution** -This Galaxy tool relies on the JBrowse2, maintained by the GMOD Community. The Galaxy wrapper is maintained by Ross Lazarus -until the IUC complete their own. -]]> - </token> - <xml name="genome_selector" - token_help="" - token_label="Fasta sequences" - token_optional="False" > - <conditional name="reference_genome"> - <param help="Built-in references" label="Reference genome to display" name="genome_type_select" type="select"> - <option selected="True" value="indexed">Use a built-in genome</option> - <option value="history">Use a genome from history</option> - </param> - <when value="indexed"> - <param - help="@HELP@" - label="@LABEL@" - name="genomes" - type="select" - optional="@OPTIONAL@" - > - <options from_data_table="all_fasta"> - <filter column="2" type="sort_by" /> - <validator message="No genomes are available for the selected input dataset" type="no_options" /> - </options> - </param> - </when> - <when value="history"> - <param - format="fasta" - label="@LABEL@" - help="@HELP@" - name="genomes" - type="data" - optional="@OPTIONAL@" - multiple="True" /> - </when> - </conditional> - </xml> - - <xml name="auto_manual_tk" - token_cond_label="Color" - token_cond_name="color" - token_select_label="Color Specification" - token_select_name="color_select" - token_automatic_label="Automatically selected" - token_manual_label="Manual Color Selection"> - <conditional name="@COND_NAME@" label="@COND_LABEL@"> - <param type="select" label="@SELECT_LABEL@" name="@SELECT_NAME@"> - <option value="automatic" selected="true">@AUTOMATIC_LABEL@</option> - <option value="manual">@MANUAL_LABEL@</option> - </param> - <when value="automatic"> - </when> - <when value="manual"> - <yield /> - </when> - </conditional> - </xml> - - <xml name="jb_color" - token_label="JBrowse style.color" - token_name="style_color" - token_value="goldenrod" - token_help="Basic color of features. Most glyphs interpret this as the fill color of the rectangle they draw. Color syntax is the same as that used for CSS" - > - <param label="@LABEL@" type="color" name="@NAME@" value="@VALUE@" help="@HELP@"> - <sanitizer> - <valid initial="string.letters,string.digits"> - <add value="#" /> - </valid> - </sanitizer> - </param> - </xml> - - <xml name="auto_color" - token_cond_label="Color" - token_cond_name="color" - token_select_label="Color Selection" - token_select_name="color_select" - token_automatic_label="Automatically selected" - token_manual_label="Manual Color Selection"> - <expand macro="auto_manual_tk" - cond_label="@COND_LABEL@" - cond_name="@COND_NAME@" - select_label="@SELECT_LABEL@" - select_name="@SELECT_NAME@" - automatic_label="@AUTOMATIC_LABEL@" - manual_label="@MANUAL_LABEL@"> - <expand macro="jb_color" /> - <yield /> - </expand> - </xml> - - - - <xml name="brewer_scheme"> - <param type="select" label="Brewer color Scheme" name="brewer_scheme"> - <option value="BrBg">BrBg: Brown - Blue Green</option> - <option value="PiYg">PiYg: Pink - Yellow Green</option> - <option value="PRGn">PRGn: Purple Red - Green</option> - <option value="PuOr">PuOr: Purple - Orange</option> - <option value="RdBu" selected="true">RdBu: Red - Blue</option> - <option value="RdGy">RdGy: Red - Gray</option> - <option value="RdYlBu">RdYlBu: Red - Yellow - Blue</option> - <option value="RdYlGn">RdYlBu: Red - Yellow - Green</option> - <option value="Spectral">Spectral</option> - </param> - </xml> - - <xml name="general_options"> - <section name="jbgen" title="General JBrowse Options [Advanced]" expanded="false"> - <conditional name="ucol"> - <param name="formcoll" type="select" label="Convert a collection of track files rather than filling in the tool form" - help="A collection of bam/vcf and other track types will be converted into a JBrowse2 automatically"> - <option value="form" selected="true">Fill in the tool form to specify tracks for the output JBrowse2</option> - <option value="collect">Convert a collection of suitable track files</option> - </param> - <when value="collect"> - <param label="Collection of bed, bam and other track files" name="autoCollection" type="data_collection" /> - </when> - <when value="form"> - </when> - </conditional> - - <param label="Create a zip archive for downloading rather than viewing " name="zipOut" help="Default is to make an interactive browser appear when the 'eye' icon is activated" - type="boolean" checked="false" truevalue="true" falsevalue="false" /> - <param label="Subset to display to new users" type="text" name="defaultLocation" value="" help="Initial subset to be shown for users who have never visited the browser before. Example: 'ctgA:1234..5678'"/> - <param label="Session name" type="text" name="session_name" value="New session" help="Displayed at the top of the window"/> - <param label="Enable analytics" help="Will send usage data to Google Analytics, see https://github.com/GMOD/jbrowse-components/issues/1166" name="enableAnalytics" type="boolean" checked="false" truevalue="true" falsevalue="false" /> - - <param name="primary_color" type="color" label="Primary color" value="#0D233F"> - <sanitizer> - <valid initial="string.ascii_letters,string.digits"> - <add value="#" /> - </valid> - </sanitizer> - </param> - <param name="secondary_color" type="color" label="Secondary color" value="#721E63"> - <sanitizer> - <valid initial="string.ascii_letters,string.digits"> - <add value="#" /> - </valid> - </sanitizer> - </param> - <param name="tertiary_color" type="color" label="Tertiary color" value="#135560"> - <sanitizer> - <valid initial="string.ascii_letters,string.digits"> - <add value="#" /> - </valid> - </sanitizer> - </param> - <param name="quaternary_color" type="color" label="Quaternary color" value="#FFB11D"> - <sanitizer> - <valid initial="string.ascii_letters,string.digits"> - <add value="#" /> - </valid> - </sanitizer> - </param> - - <param label="Font size" name="font_size" type="integer" value="10" /> - </section> - </xml> - - <xml name="color_selection_minmax"> - <section name="jbcolor" title="JBrowse Color Options [Advanced]" expanded="false"> - <!-- Abuse auto/manual for bicolor pivot. Means we'll have to handle the - auto case as well, but may be safe to just say "brewer colors? Pff, - red/blue" --> - <expand macro="auto_manual_tk" - token_cond_label="Color" - token_cond_name="color" - token_select_label="Color Selection" - token_select_name="color_select" - token_automatic_label="Automatically selected" - token_manual_label="Manual Color Selection"> - <expand macro="jb_color" - label="JBrowse style.pos_color" - name="style_pos_color" - value="blue" - help="CSS color, default 'blue'. When drawing bicolor plots, the fill color to use for values that are above the pivot point." /> - <expand macro="jb_color" - label="JBrowse style.neg_color" - name="style_neg_color" - value="red" - help=" CSS color, default 'red'. When drawing bicolor plots, the fill color to use for values that are below the pivot point." /> - </expand> - - <conditional name="bicolor_pivot" label="Bicolor Pivot"> - <param type="select" label="Bicolor Pivot" name="bicolor_pivot_select"> - <option value="zero" selected="true">Zero</option> - <option value="mean">Mean</option> - <option value="custom">Custom Value</option> - </param> - <when value="zero" /> - <when value="mean" /> - <when value="custom"> - <param label="JBrowse style.bicolor_pivot" type="float" name="pivot_point" value="0.0" help="Where to change from pos_color to neg_color when drawing bicolor plots." /> - </when> - </conditional> - </section> - </xml> - - <xml name="color_selection" - token_scaling_lin_select="true" - token_scaling_log_select="false" - > - <section name="jbcolor_scale" title="JBrowse Feature Score Scaling & Coloring Options [Advanced]" expanded="false"> - <conditional name="color_score" label="JBrowse style.color & Score relationship"> - <param type="select" label="Color Score Algorithm" name="color_score_select" help="How to color the features. If it is based on score, then features with a score attribute anywhere in their hierachy will have their color affected by the score. If you choose to ignore the score, then you'll be able to select a single solid color for every feature in the track"> - <option value="score">Based on score</option> - <option value="none" selected="true">Ignore score</option> - </param> - <when value="none"> - <!-- When no scaling is done, no scores available, then just let the - user choose a base color for the track --> - <expand macro="auto_color" /> - </when> - <when value="score"> - <!-- Scaling --> - <param type="select" label="JBrowse style.color function's score scaling" name="score_scaling" - help="How should the colors be distributed across the values? For blast results which distributes scores on the scale of approximately [1e-500, 10], it makes sense to request a logarithmic scaling of the color values. Logarithmic is indeed the default for blast. However other analysis methods may produce scores on ranges such as [0, 100] where a linear scale would be more appropriate for color distribution."> - <option value="linear" selected="@SCALING_LIN_SELECT@">Linear scaling</option> - <option value="logarithmic" selected="false">Logarithmic scaling</option> - <option value="blast" selected="@SCALING_LOG_SELECT@">Blast scaling</option> - </param> - - <!-- Scaling Bounds --> - <conditional name="score_scales" label="Minimum/Maximum values for track scores"> - <param type="select" label="How should minimum and maximum values be determined for the scores of the features" name="scale_select"> - <option value="automatic" selected="true">Automatically determined</option> - <option value="manual">Manually specify minimum and maximum expected scores for the feature track</option> - </param> - <when value="automatic" /> - <when value="manual"> - <param label="Minimum expected score" name="minimum" type="integer" value="0" /> - <param label="Maximum expected score" name="maximum" type="integer" value="100" /> - </when> - </conditional> - - <!-- Scale color --> - <conditional name="color_scheme" label="Color Scheme for scored features"> - <param type="select" label="JBrowse style.color function's color scheme for scored values" name="score_scheme"> - <option value="opacity">Opacity (high scores = 1.0 opacity)</option> - <!--<option value="brewer">Brewer Color Schemes</option>--> - </param> - <when value="opacity"> - <!-- Single color selection mode --> - <expand macro="auto_color" /> - </when> - <!--<when value="brewer">--> - <!--[> Brewer continuum selection <]--> - <!--<expand macro="brewer_scheme" />--> - <!--</when>--> - </conditional> - </when> - </conditional> - </section> - </xml> - - <xml name="track_visibility"> - <param type="select" label="Track Visibility" name="track_visibility"> - <option value="default_off">Off when browser opens</option> - <option value="default_on" selected="true">On when browser opens</option> - </param> - </xml> - - <xml name="track_styling_linear"> - <param label="Show labels" name="show_labels" type="boolean" checked="false" truevalue="true" falsevalue="false" /> - <param label="Show descriptions" name="show_descriptions" type="boolean" checked="false" truevalue="true" falsevalue="false" /> - <param name="display_mode" type="select" label="Display mode"> - <option value="normal" selected="true">normal</option> - <option value="compact">compact</option> - <option value="reducedRepresentation">reducedRepresentation</option> - <option value="collapse">collapse</option> - </param> - <param label="Max height" name="max_height" type="integer" value="600" help="Maximum height that the track is permitted to reach in pixels."/> - </xml> - - <xml name="track_styling_feature"> - <section name="jbstyle" title="JBrowse Styling Options [Advanced]" expanded="false"> - <conditional name="track_style"> - <param name="display" type="select" label="Display style" help="How the track will be displayed by default"> - <option value="LinearBasicDisplay" selected="true">LinearBasicDisplay</option> - <option value="LinearPileupDisplay">LinearPileupDisplay - good for dense tracks at scale</option> - <option value="LinearArcDisplay">LinearArcDisplay</option> - </param> - <when value="LinearPileupDisplay"> - <expand macro="track_styling_linear"/> - </when> - <when value="LinearBasicDisplay"> - <expand macro="track_styling_linear"/> - - <!-- examples: https://github.com/GMOD/jbrowse-components/discussions/2729 - and https://github.com/GMOD/jbrowse-components/blob/main/plugins/svg/src/SvgFeatureRenderer/configSchema.ts#L41 --> - <param label="Features label" - type="text" - name="label" - value="jexl:get(feature,'name') || get(feature,'id')" - help="See https://jbrowse.org/jb2/docs/config_guide/#configuration-callbacks for syntax"> - <sanitizer> - <valid initial="default"> - <add value="|" /> - <add value="{"/> - <add value="}"/> - <add value="!"/> - <add value="?"/> - <add value="+"/> - <add value="="/> - <add value="'"/> - </valid> - </sanitizer> - </param> - <param label="Features description" - type="text" - name="description" - value="jexl:get(feature,'note') || get(feature,'description')" - help="See https://jbrowse.org/jb2/docs/config_guide/#configuration-callbacks for syntax"> - <sanitizer> - <valid initial="default"> - <add value="|" /> - <add value="{"/> - <add value="}"/> - <add value="!"/> - <add value="?"/> - <add value="+"/> - <add value="="/> - <add value="'"/> - </valid> - </sanitizer> - </param> - </when> - <when value="LinearArcDisplay"/> - </conditional> - </section> - </xml> - - <xml name="track_styling_xam"> - <section name="jbstyle" title="JBrowse Styling Options [Advanced]" expanded="false"> - <conditional name="track_style"> - <param name="display" type="select" label="Display style" help="How the track will be displayed by default"> - <option value="LinearAlignmentsDisplay" selected="true">LinearAlignmentsDisplay</option> - <option value="LinearPileupDisplay">LinearPileupDisplay</option> - <option value="LinearSNPCoverageDisplay">LinearSNPCoverageDisplay</option> - </param> - <when value="LinearAlignmentsDisplay"/> - <when value="LinearPileupDisplay"/> - <when value="LinearSNPCoverageDisplay"> - <param name="displayCrossHatches" label="Draw cross hatches" type="boolean" checked="true" truevalue="true" falsevalue="false" /> - <param name="minScore" label="Min score" type="integer" value="" optional="true"/> - <param name="maxScore" label="Max score" type="integer" value="" optional="true"/> - </when> - </conditional> - </section> - </xml> - - <xml name="track_styling_vcf"> - <section name="jbstyle" title="JBrowse Styling Options [Advanced]" expanded="false"> - <conditional name="track_style"> - <param name="display" type="select" label="Display style" help="How the track will be displayed by default"> - <option value="LinearVariantDisplay" selected="true">LinearVariantDisplay</option> - </param> - <when value="LinearVariantDisplay"> - <expand macro="track_styling_linear"/> - </when> - </conditional> - </section> - </xml> - - <xml name="track_styling_bigwig"> - <section name="jbstyle" title="JBrowse Styling Options [Advanced]" expanded="false"> - <conditional name="track_style"> - <param name="display" type="select" label="Display style" help="How the track will be displayed by default"> - <option value="LinearWiggleDisplay" selected="true">LinearWiggleDisplay</option> - </param> - <when value="LinearWiggleDisplay"> - <param name="autoscale" type="select" label="Autoscale type"> - <option value="local" selected="true">Local</option> - <option value="global">Global</option> - <option value="globalsd">Global ± 3σ</option> - <option value="localsd">Local ± 3σ</option> - </param> - <param name="resolution" label="Resolution" type="integer" value="1"/> - <param name="summaryScoreMode" type="select" label="Autoscale type"> - <option value="max">Max</option> - <option value="min">Min</option> - <option value="avg">Avg</option> - <option value="whiskers" selected="true">Whiskers (combines all three)</option> - </param> - <param name="filled" label="Fill in histogram" type="boolean" checked="true" truevalue="true" falsevalue="false" /> - <param name="scaleType" type="select" label="Autoscale type"> - <option value="linear" selected="true">Linear</option> - <option value="log">Log</option> - </param> - <param name="displayCrossHatches" label="Draw cross hatches" type="boolean" checked="true" truevalue="true" falsevalue="false" /> - <param name="minScore" label="Min score" type="integer" value="" optional="true"/> - <param name="maxScore" label="Max score" type="integer" value="" optional="true"/> - </when> - </conditional> - </section> - </xml> - - <xml name="track_menu"> - <section name="jbmenu" title="JBrowse Contextual Menu options [Advanced]" expanded="false"> - <repeat name="track_menu" title="Track Menu"> - <param label="Menu action" - type="select" - name="menu_action" - help="Action performed when user clicks on the menu"> - <option value="iframeDialog" selected="true">iframeDialog: causes the given url to be opened in a popup dialog box within JBrowse, in an iframe element.</option> - <option value="newWindow">newWindow: causes the given url to be opened in a new browser window.</option> - <option value="navigateTo">navigateTo: opens the given url in the same browser window, navigating the user away from JBrowse.</option> - </param> - <param label="Menu label" - type="text" - name="menu_label" - help="Will be displayed in the contextual menu on each feature ({name}, {id}, {type}, {start}, {end}, {strand} variables will be interpreted)"> - <expand macro="menu_sanitize" /> - </param> - <param label="Menu title" - type="text" - name="menu_title" - help="Will be displayed in the popup title bar if displayed ({id}, {type}, {start}, {end}, {strand} variables will be interpreted)"> - <expand macro="menu_sanitize" /> - </param> - <param label="Menu url" - type="text" - name="menu_url" - help="Destination URL ({name}, {id}, {type}, {start}, {end}, {strand} variables will be interpreted)"> - <expand macro="menu_sanitize" /> - </param> - <param label="Menu icon" - type="select" - name="menu_icon" - help="Icon to display next to menu label"> - <option value="dijitIconBookmark" selected="true">Bookmark</option> - <option value="dijitIconSave">Save</option> - <option value="dijitIconPrint">Print</option> - <option value="dijitIconCut">Cut</option> - <option value="dijitIconCopy">Copy</option> - <option value="dijitIconClear">Clear</option> - <option value="dijitIconDelete">Delete</option> - <option value="dijitIconUndo">Undo</option> - <option value="dijitIconEdit">Edit</option> - <option value="dijitIconNewTask">New Task</option> - <option value="dijitIconEditTask">Edit Task</option> - <option value="dijitIconEditProperty">Edit Property</option> - <option value="dijitIconTask">Task</option> - <option value="dijitIconFilter">Filter</option> - <option value="dijitIconConfigure">Configure</option> - <option value="dijitIconSearch">Search</option> - <option value="dijitIconApplication">Application</option> - <option value="dijitIconChart">Chart</option> - <option value="dijitIconConnector">Connector</option> - <option value="dijitIconDatabase">Database</option> - <option value="dijitIconDocuments">Documents</option> - <option value="dijitIconMail">Mail</option> - <option value="dijitLeaf">Leaf</option> - <option value="dijitIconFile">File</option> - <option value="dijitIconFunction">Function</option> - <option value="dijitIconKey">Key</option> - <option value="dijitIconPackage">Package</option> - <option value="dijitIconSample">Sample</option> - <option value="dijitIconTable">Table</option> - <option value="dijitIconUsers">Users</option> - <option value="dijitIconFolderClosed">Folder Closed</option> - <option value="dijitIconFolderOpen">Folder Open</option> - <option value="dijitIconError">Error</option> - </param> - </repeat> - </section> - </xml> - - <xml name="menu_sanitize"> - <sanitizer> - <valid> - <add value="{"/> - <add value="}"/> - <add value="!"/> - <add value="?"/> - <add value="&"/> - <add value="+"/> - <add value="="/> - <add value="'"/> - <add value='"'/> - </valid> - </sanitizer> - </xml> - - <xml name="input_conditional" token_label="Track Data" token_format="data"> - <conditional name="useuri"> - <param name="insource" type="select" label="Define track data as a history file or an internet URI" - help="A public URI implies that all the associated tabix files are also in place. They are created for history files"> - <option value="history" selected="true">Track data from a history file</option> - <option value="uri" selected="true">Tabix data URI - index files must be available at corresponding URI</option> - </param> - <when value="history"> - <param label="@LABEL@" format="@FORMAT@" name="annotation" multiple="True" optional="true" type="data" /> - </when> - <when value="uri"> - <param label="@LABEL@" name="annouri" type="text" /> - <param label="Short name for track display" name="annoname" type="text" > - <sanitizer invalid_char="_"> - <valid initial="string.printable" > - <remove value="'" /> - </valid> - </sanitizer> - </param> - </when> - </conditional> - </xml> - <xml name="citations"> - <citations> - <citation type="doi">10.1186/s13059-016-0924-1</citation> - <citation type="doi">10.1101/gr.094607.109</citation> - </citations> - </xml> -</macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/blastxml/blast-gene1.xml Thu Mar 28 04:51:06 2024 +0000 @@ -0,0 +1,126 @@ +<?xml version="1.0"?> +<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> +<BlastOutput> + <BlastOutput_program>blastp</BlastOutput_program> + <BlastOutput_version>BLASTP 2.2.28+</BlastOutput_version> + <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> + <BlastOutput_db>/usr/local/syncdb/community/nr/nr</BlastOutput_db> + <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> + <BlastOutput_query-def>Merlin_1</BlastOutput_query-def> + <BlastOutput_query-len>229</BlastOutput_query-len> + <BlastOutput_param> + <Parameters> + <Parameters_matrix>BLOSUM62</Parameters_matrix> + <Parameters_expect>0.001</Parameters_expect> + <Parameters_gap-open>11</Parameters_gap-open> + <Parameters_gap-extend>1</Parameters_gap-extend> + <Parameters_filter>F</Parameters_filter> + </Parameters> + </BlastOutput_param> +<BlastOutput_iterations> +<Iteration> + <Iteration_iter-num>1</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>Merlin_1</Iteration_query-def> + <Iteration_query-len>229</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gi|422934611|ref|YP_007004572.1|</Hit_id> + <Hit_def>hypothetical protein [Enterobacteria phage ime09] >gi|339791394|gb|AEK12451.1| hypothetical protein [Enterobacteria phage ime09]</Hit_def> + <Hit_accession>YP_007004572</Hit_accession> + <Hit_len>685</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>197.593</Hsp_bit-score> + <Hsp_score>501</Hsp_score> + <Hsp_evalue>3.74548e-55</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>229</Hsp_query-to> + <Hsp_hit-from>474</Hsp_hit-from> + <Hsp_hit-to>684</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>106</Hsp_identity> + <Hsp_positive>154</Hsp_positive> + <Hsp_gaps>21</Hsp_gaps> + <Hsp_align-len>230</Hsp_align-len> + <Hsp_qseq>LDKGTLLYRGQKLDLPTFEHNAENKLFYFRNYVSTSLKPLIFGEFGRMFMALDDDTTIYTAETPDDYNRFANPEDIIDIGATQKDSFDDNNNDGTSINIGKQVNLGFVISGAENVRVIVPGSLTEYPEEAEVILPRGTLLKINKITTQVDKRS--NKFMVEGSIVPPSEQIDESVEIYDGDLFMETGEVVKLSGFMQFVNESAYDEEQNQMAAEILSGFLDIDDMPRKFR</Hsp_qseq> + <Hsp_hseq>LPPGTTLYRGQEVTFKTLRHNIENKMFYFKNFVSTSLKPNIFGEHGKNYMALDDSGAVFSGEGEGS----VDAEDLMHMGSHSAYANED-----------AETSVGMVIKGAERIKVIVPGHLSGFPSEAEVILPRGILLKINKVSTYMMKETAYNKYLIEGTIVPPSEQLEESV--YDGDHLMETGEVRPMAGFNQFLVEES--KEEENEVSQILASLVNINGMSKKFK</Hsp_hseq> + <Hsp_midline>L GT LYRGQ++ T HN ENK+FYF+N+VSTSLKP IFGE G+ +MALDD +++ E + ED++ +G+ + +D + ++G VI GAE ++VIVPG L+ +P EAEVILPRG LLKINK++T + K + NK+++EG+IVPPSEQ++ESV YDGD METGEV ++GF QF+ E + +E+ ++IL+ ++I+ M +KF+</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>2</Hit_num> + <Hit_id>gi|330858714|ref|YP_004415089.1|</Hit_id> + <Hit_def>hypothetical protein Shfl2p198 [Shigella phage Shfl2] >gi|327397648|gb|AEA73150.1| hypothetical protein Shfl2p198 [Shigella phage Shfl2]</Hit_def> + <Hit_accession>YP_004415089</Hit_accession> + <Hit_len>685</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>197.593</Hsp_bit-score> + <Hsp_score>501</Hsp_score> + <Hsp_evalue>4.31042e-55</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>229</Hsp_query-to> + <Hsp_hit-from>474</Hsp_hit-from> + <Hsp_hit-to>684</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>106</Hsp_identity> + <Hsp_positive>154</Hsp_positive> + <Hsp_gaps>21</Hsp_gaps> + <Hsp_align-len>230</Hsp_align-len> + <Hsp_qseq>LDKGTLLYRGQKLDLPTFEHNAENKLFYFRNYVSTSLKPLIFGEFGRMFMALDDDTTIYTAETPDDYNRFANPEDIIDIGATQKDSFDDNNNDGTSINIGKQVNLGFVISGAENVRVIVPGSLTEYPEEAEVILPRGTLLKINKITTQVDKRS--NKFMVEGSIVPPSEQIDESVEIYDGDLFMETGEVVKLSGFMQFVNESAYDEEQNQMAAEILSGFLDIDDMPRKFR</Hsp_qseq> + <Hsp_hseq>LPPGTTLYRGQEVTFKTLRHNIENKMFYFKNFVSTSLKPNIFGEHGKNYMALDDSGAVFSGEGEGS----VDAEDLMHMGSHSAYANED-----------AETSVGMVIKGAERIKVIVPGHLSGFPSEAEVILPRGILLKINKVSTYMMKETAYNKYLIEGTIVPPSEQLEESV--YDGDHLMETGEVRPMAGFNQFLVEES--KEEENEVSQILASLVNINGMSKKFK</Hsp_hseq> + <Hsp_midline>L GT LYRGQ++ T HN ENK+FYF+N+VSTSLKP IFGE G+ +MALDD +++ E + ED++ +G+ + +D + ++G VI GAE ++VIVPG L+ +P EAEVILPRG LLKINK++T + K + NK+++EG+IVPPSEQ++ESV YDGD METGEV ++GF QF+ E + +E+ ++IL+ ++I+ M +KF+</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>3</Hit_num> + <Hit_id>gi|228861509|ref|YP_002854530.1|</Hit_id> + <Hit_def>alt.-2 hypothetical protein [Enterobacteria phage RB14] >gi|227438525|gb|ACP30838.1| alt.-2 hypothetical protein [Enterobacteria phage RB14]</Hit_def> + <Hit_accession>YP_002854530</Hit_accession> + <Hit_len>685</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>197.593</Hsp_bit-score> + <Hsp_score>501</Hsp_score> + <Hsp_evalue>4.35388e-55</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>229</Hsp_query-to> + <Hsp_hit-from>474</Hsp_hit-from> + <Hsp_hit-to>684</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>108</Hsp_identity> + <Hsp_positive>152</Hsp_positive> + <Hsp_gaps>21</Hsp_gaps> + <Hsp_align-len>230</Hsp_align-len> + <Hsp_qseq>LDKGTLLYRGQKLDLPTFEHNAENKLFYFRNYVSTSLKPLIFGEFGRMFMALDDDTTIYTAETPDDYNRFANPEDIIDIGATQKDSFDDNNNDGTSINIGKQVNLGFVISGAENVRVIVPGSLTEYPEEAEVILPRGTLLKINKITTQVDKRS--NKFMVEGSIVPPSEQIDESVEIYDGDLFMETGEVVKLSGFMQFVNESAYDEEQNQMAAEILSGFLDIDDMPRKFR</Hsp_qseq> + <Hsp_hseq>LPPGTTLYRGQEVTFKTLRHNIENKMFYFKNFVSTSLKPNIFGEHGKNYMALDDSGAVFSGEGEGS----VDAEDLMHMGS-----------HSTYANEDAETSVGMVIKGAERVKVIVPGHLSGFPSEAEVILPRGILLKINKVSTYFMKETAYNKYLIEGTIVPPSEQLEESV--YDGDHLMETGEVRPMAGFNQFLVEES--KEEENEVSQILASLVNINGMSKKFK</Hsp_hseq> + <Hsp_midline>L GT LYRGQ++ T HN ENK+FYF+N+VSTSLKP IFGE G+ +MALDD +++ E + ED++ +G+ T N + ++G VI GAE V+VIVPG L+ +P EAEVILPRG LLKINK++T K + NK+++EG+IVPPSEQ++ESV YDGD METGEV ++GF QF+ E + +E+ ++IL+ ++I+ M +KF+</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>48094830</Statistics_db-num> + <Statistics_db-len>17186091396</Statistics_db-len> + <Statistics_hsp-len>143</Statistics_hsp-len> + <Statistics_eff-space>886533640716</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +</BlastOutput_iterations> +</BlastOutput> +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/blastxml/blast.xml Thu Mar 28 04:51:06 2024 +0000 @@ -0,0 +1,2862 @@ +<?xml version="1.0"?> +<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> +<BlastOutput> + <BlastOutput_program>blastp</BlastOutput_program> + <BlastOutput_version>BLASTP 2.2.28+</BlastOutput_version> + <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> + <BlastOutput_db>/usr/local/syncdb/community/nr/nr</BlastOutput_db> + <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> + <BlastOutput_query-def>Merlin_1</BlastOutput_query-def> + <BlastOutput_query-len>229</BlastOutput_query-len> + <BlastOutput_param> + <Parameters> + <Parameters_matrix>BLOSUM62</Parameters_matrix> + <Parameters_expect>0.001</Parameters_expect> + <Parameters_gap-open>11</Parameters_gap-open> + <Parameters_gap-extend>1</Parameters_gap-extend> + <Parameters_filter>F</Parameters_filter> + </Parameters> + </BlastOutput_param> +<BlastOutput_iterations> +<Iteration> + <Iteration_iter-num>1</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>Merlin_1</Iteration_query-def> + <Iteration_query-len>229</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gi|422934611|ref|YP_007004572.1|</Hit_id> + <Hit_def>hypothetical protein [Enterobacteria phage ime09] >gi|339791394|gb|AEK12451.1| hypothetical protein [Enterobacteria phage ime09]</Hit_def> + <Hit_accession>YP_007004572</Hit_accession> + <Hit_len>685</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>197.593</Hsp_bit-score> + <Hsp_score>501</Hsp_score> + <Hsp_evalue>3.74548e-55</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>229</Hsp_query-to> + <Hsp_hit-from>474</Hsp_hit-from> + <Hsp_hit-to>684</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>106</Hsp_identity> + <Hsp_positive>154</Hsp_positive> + <Hsp_gaps>21</Hsp_gaps> + <Hsp_align-len>230</Hsp_align-len> + <Hsp_qseq>LDKGTLLYRGQKLDLPTFEHNAENKLFYFRNYVSTSLKPLIFGEFGRMFMALDDDTTIYTAETPDDYNRFANPEDIIDIGATQKDSFDDNNNDGTSINIGKQVNLGFVISGAENVRVIVPGSLTEYPEEAEVILPRGTLLKINKITTQVDKRS--NKFMVEGSIVPPSEQIDESVEIYDGDLFMETGEVVKLSGFMQFVNESAYDEEQNQMAAEILSGFLDIDDMPRKFR</Hsp_qseq> + <Hsp_hseq>LPPGTTLYRGQEVTFKTLRHNIENKMFYFKNFVSTSLKPNIFGEHGKNYMALDDSGAVFSGEGEGS----VDAEDLMHMGSHSAYANED-----------AETSVGMVIKGAERIKVIVPGHLSGFPSEAEVILPRGILLKINKVSTYMMKETAYNKYLIEGTIVPPSEQLEESV--YDGDHLMETGEVRPMAGFNQFLVEES--KEEENEVSQILASLVNINGMSKKFK</Hsp_hseq> + <Hsp_midline>L GT LYRGQ++ T HN ENK+FYF+N+VSTSLKP IFGE G+ +MALDD +++ E + ED++ +G+ + +D + ++G VI GAE ++VIVPG L+ +P EAEVILPRG LLKINK++T + K + NK+++EG+IVPPSEQ++ESV YDGD METGEV ++GF QF+ E + +E+ ++IL+ ++I+ M +KF+</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>2</Hit_num> + <Hit_id>gi|330858714|ref|YP_004415089.1|</Hit_id> + <Hit_def>hypothetical protein Shfl2p198 [Shigella phage Shfl2] >gi|327397648|gb|AEA73150.1| hypothetical protein Shfl2p198 [Shigella phage Shfl2]</Hit_def> + <Hit_accession>YP_004415089</Hit_accession> + <Hit_len>685</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>197.593</Hsp_bit-score> + <Hsp_score>501</Hsp_score> + <Hsp_evalue>4.31042e-55</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>229</Hsp_query-to> + <Hsp_hit-from>474</Hsp_hit-from> + <Hsp_hit-to>684</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>106</Hsp_identity> + <Hsp_positive>154</Hsp_positive> + <Hsp_gaps>21</Hsp_gaps> + <Hsp_align-len>230</Hsp_align-len> + <Hsp_qseq>LDKGTLLYRGQKLDLPTFEHNAENKLFYFRNYVSTSLKPLIFGEFGRMFMALDDDTTIYTAETPDDYNRFANPEDIIDIGATQKDSFDDNNNDGTSINIGKQVNLGFVISGAENVRVIVPGSLTEYPEEAEVILPRGTLLKINKITTQVDKRS--NKFMVEGSIVPPSEQIDESVEIYDGDLFMETGEVVKLSGFMQFVNESAYDEEQNQMAAEILSGFLDIDDMPRKFR</Hsp_qseq> + <Hsp_hseq>LPPGTTLYRGQEVTFKTLRHNIENKMFYFKNFVSTSLKPNIFGEHGKNYMALDDSGAVFSGEGEGS----VDAEDLMHMGSHSAYANED-----------AETSVGMVIKGAERIKVIVPGHLSGFPSEAEVILPRGILLKINKVSTYMMKETAYNKYLIEGTIVPPSEQLEESV--YDGDHLMETGEVRPMAGFNQFLVEES--KEEENEVSQILASLVNINGMSKKFK</Hsp_hseq> + <Hsp_midline>L GT LYRGQ++ T HN ENK+FYF+N+VSTSLKP IFGE G+ +MALDD +++ E + ED++ +G+ + +D + ++G VI GAE ++VIVPG L+ +P EAEVILPRG LLKINK++T + K + NK+++EG+IVPPSEQ++ESV YDGD METGEV ++GF QF+ E + +E+ ++IL+ ++I+ M +KF+</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>3</Hit_num> + <Hit_id>gi|228861509|ref|YP_002854530.1|</Hit_id> + <Hit_def>alt.-2 hypothetical protein [Enterobacteria phage RB14] >gi|227438525|gb|ACP30838.1| alt.-2 hypothetical protein [Enterobacteria phage RB14]</Hit_def> + <Hit_accession>YP_002854530</Hit_accession> + <Hit_len>685</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>197.593</Hsp_bit-score> + <Hsp_score>501</Hsp_score> + <Hsp_evalue>4.35388e-55</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>229</Hsp_query-to> + <Hsp_hit-from>474</Hsp_hit-from> + <Hsp_hit-to>684</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>108</Hsp_identity> + <Hsp_positive>152</Hsp_positive> + <Hsp_gaps>21</Hsp_gaps> + <Hsp_align-len>230</Hsp_align-len> + <Hsp_qseq>LDKGTLLYRGQKLDLPTFEHNAENKLFYFRNYVSTSLKPLIFGEFGRMFMALDDDTTIYTAETPDDYNRFANPEDIIDIGATQKDSFDDNNNDGTSINIGKQVNLGFVISGAENVRVIVPGSLTEYPEEAEVILPRGTLLKINKITTQVDKRS--NKFMVEGSIVPPSEQIDESVEIYDGDLFMETGEVVKLSGFMQFVNESAYDEEQNQMAAEILSGFLDIDDMPRKFR</Hsp_qseq> + <Hsp_hseq>LPPGTTLYRGQEVTFKTLRHNIENKMFYFKNFVSTSLKPNIFGEHGKNYMALDDSGAVFSGEGEGS----VDAEDLMHMGS-----------HSTYANEDAETSVGMVIKGAERVKVIVPGHLSGFPSEAEVILPRGILLKINKVSTYFMKETAYNKYLIEGTIVPPSEQLEESV--YDGDHLMETGEVRPMAGFNQFLVEES--KEEENEVSQILASLVNINGMSKKFK</Hsp_hseq> + <Hsp_midline>L GT LYRGQ++ T HN ENK+FYF+N+VSTSLKP IFGE G+ +MALDD +++ E + ED++ +G+ T N + ++G VI GAE V+VIVPG L+ +P EAEVILPRG LLKINK++T K + NK+++EG+IVPPSEQ++ESV YDGD METGEV ++GF QF+ E + +E+ ++IL+ ++I+ M +KF+</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>48094830</Statistics_db-num> + <Statistics_db-len>17186091396</Statistics_db-len> + <Statistics_hsp-len>143</Statistics_hsp-len> + <Statistics_eff-space>886533640716</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>2</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>Merlin_2</Iteration_query-def> + <Iteration_query-len>95</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gi|308814559|ref|YP_003934833.1|</Hit_id> + <Hit_def>hypothetical protein SP18_gp210 [Shigella phage SP18] >gi|308206151|gb|ADO19550.1| hypothetical protein SP18gp210 [Shigella phage SP18]</Hit_def> + <Hit_accession>YP_003934833</Hit_accession> + <Hit_len>107</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>79.337</Hsp_bit-score> + <Hsp_score>194</Hsp_score> + <Hsp_evalue>9.23754e-17</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>95</Hsp_query-to> + <Hsp_hit-from>12</Hsp_hit-from> + <Hsp_hit-to>107</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>42</Hsp_identity> + <Hsp_positive>56</Hsp_positive> + <Hsp_gaps>1</Hsp_gaps> + <Hsp_align-len>96</Hsp_align-len> + <Hsp_qseq>MKSIFRINGVEIVVEDVVPMSYEFNEVVFKELKKILG-DKKLQSTPIGRFGMKENVDTYIESVVTGQLEGEFSVAVQTVENDEVILTLPAFVIFRK</Hsp_qseq> + <Hsp_hseq>MKSSFRFNGQELVVENVIPASEEFDSAVGNELRRVFGEDKKFDLRPVENFVNSEQTENIFNGVVTGQLESEAPIAITVFAKKEVVMTAAGFISFRK</Hsp_hseq> + <Hsp_midline>MKS FR NG E+VVE+V+P S EF+ V EL+++ G DKK P+ F E + VVTGQLE E +A+ EV++T F+ FRK</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>2</Hit_num> + <Hit_id>gi|456351278|ref|YP_007501230.1|</Hit_id> + <Hit_def>hypothetical protein [Salmonella phage S16] >gi|448913695|gb|AGE48199.1| hypothetical protein [Salmonella phage S16]</Hit_def> + <Hit_accession>YP_007501230</Hit_accession> + <Hit_len>106</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>77.7962</Hsp_bit-score> + <Hsp_score>190</Hsp_score> + <Hsp_evalue>2.9568e-16</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>94</Hsp_query-to> + <Hsp_hit-from>11</Hsp_hit-from> + <Hsp_hit-to>106</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>42</Hsp_identity> + <Hsp_positive>57</Hsp_positive> + <Hsp_gaps>2</Hsp_gaps> + <Hsp_align-len>96</Hsp_align-len> + <Hsp_qseq>MKSIFRINGVEIVVEDVVPMSYEFNEVVFKELKKILG-DKKLQSTPIGRFGMKE-NVDTYIESVVTGQLEGEFSVAVQTVENDEVILTLPAFVIFR</Hsp_qseq> + <Hsp_hseq>MKSILRIASTEIVIENAKPDSREFNEAAYELLQELYGTDKNFQLHPLPRFGVKEGQADNYISGVLSGNLVGEVPCAISIIAEDNQISNVVGFVVFR</Hsp_hseq> + <Hsp_midline>MKSI RI EIV+E+ P S EFNE ++ L+++ G DK Q P+ RFG+KE D YI V++G L GE A+ + D I + FV+FR</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>3</Hit_num> + <Hit_id>gi|408387127|gb|AFU64136.1|</Hit_id> + <Hit_def>hypothetical protein [Salmonella phage STML-198]</Hit_def> + <Hit_accession>AFU64136</Hit_accession> + <Hit_len>96</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>77.0258</Hsp_bit-score> + <Hsp_score>188</Hsp_score> + <Hsp_evalue>5.19436e-16</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>94</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>96</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>42</Hsp_identity> + <Hsp_positive>57</Hsp_positive> + <Hsp_gaps>2</Hsp_gaps> + <Hsp_align-len>96</Hsp_align-len> + <Hsp_qseq>MKSIFRINGVEIVVEDVVPMSYEFNEVVFKELKKILG-DKKLQSTPIGRFGMKE-NVDTYIESVVTGQLEGEFSVAVQTVENDEVILTLPAFVIFR</Hsp_qseq> + <Hsp_hseq>MKSILRIASTETVIENVKPDSREFNEAAYELLQELYGTDKNFQLHPLPRFGVKEGQADNYISGVLSGNLVGEVPCAISIIAEDNQISNVVGFVVFR</Hsp_hseq> + <Hsp_midline>MKSI RI E V+E+V P S EFNE ++ L+++ G DK Q P+ RFG+KE D YI V++G L GE A+ + D I + FV+FR</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>4</Hit_num> + <Hit_id>gi|314121774|ref|YP_004063893.1|</Hit_id> + <Hit_def>Alt.-3 conserved hypothetical protein [Enterobacteria phage vB_EcoM-VR7] >gi|313151531|gb|ADR32587.1| Alt.-3 conserved hypothetical protein [Enterobacteria phage vB_EcoM-VR7]</Hit_def> + <Hit_accession>YP_004063893</Hit_accession> + <Hit_len>96</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>76.6406</Hsp_bit-score> + <Hsp_score>187</Hsp_score> + <Hsp_evalue>7.7684e-16</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>95</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>96</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>40</Hsp_identity> + <Hsp_positive>56</Hsp_positive> + <Hsp_gaps>1</Hsp_gaps> + <Hsp_align-len>96</Hsp_align-len> + <Hsp_qseq>MKSIFRINGVEIVVEDVVPMSYEFNEVVFKELKKILG-DKKLQSTPIGRFGMKENVDTYIESVVTGQLEGEFSVAVQTVENDEVILTLPAFVIFRK</Hsp_qseq> + <Hsp_hseq>MKSSFRFNGQELVVENVIPASEEFDSAVGNELRRVFGEDKKFDLRPVENFVNSEQTENIFNGIVTGQLESEAPIAITVFVKKEAVMTVAGFISFRK</Hsp_hseq> + <Hsp_midline>MKS FR NG E+VVE+V+P S EF+ V EL+++ G DKK P+ F E + +VTGQLE E +A+ E ++T+ F+ FRK</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>5</Hit_num> + <Hit_id>gi|161622625|ref|YP_001595321.1|</Hit_id> + <Hit_def>Alt.-3 conserved hypothetical protein [Enterobacteria phage JS98] >gi|52139951|gb|AAU29321.1| Alt.-3 conserved hypothetical protein [Enterobacteria phage JS98]</Hit_def> + <Hit_accession>YP_001595321</Hit_accession> + <Hit_len>96</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>75.485</Hsp_bit-score> + <Hsp_score>184</Hsp_score> + <Hsp_evalue>2.41009e-15</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>95</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>96</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>39</Hsp_identity> + <Hsp_positive>55</Hsp_positive> + <Hsp_gaps>1</Hsp_gaps> + <Hsp_align-len>96</Hsp_align-len> + <Hsp_qseq>MKSIFRINGVEIVVEDVVPMSYEFNEVVFKELKKILG-DKKLQSTPIGRFGMKENVDTYIESVVTGQLEGEFSVAVQTVENDEVILTLPAFVIFRK</Hsp_qseq> + <Hsp_hseq>MKSAFRFNGQELVVENVIPASEEFDSAVGNELRRVFGEDKQFDLRPIENFSQPEQTENIFNGVVTGQLESEAPISITVFVKKQPLMTAAGFISFRK</Hsp_hseq> + <Hsp_midline>MKS FR NG E+VVE+V+P S EF+ V EL+++ G DK+ PI F E + VVTGQLE E +++ + ++T F+ FRK</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>48094830</Statistics_db-num> + <Statistics_db-len>17186091396</Statistics_db-len> + <Statistics_hsp-len>65</Statistics_hsp-len> + <Statistics_eff-space>421797823380</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>3</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>Merlin_3</Iteration_query-def> + <Iteration_query-len>314</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gi|456351277|ref|YP_007501229.1|</Hit_id> + <Hit_def>baseplate subunit [Salmonella phage S16] >gi|347466342|gb|AEO97128.1| baseplate subunit [Salmonella phage S16] >gi|408387126|gb|AFU64135.1| tail assembly [Salmonella phage STML-198]</Hit_def> + <Hit_accession>YP_007501229</Hit_accession> + <Hit_len>305</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>573.548</Hsp_bit-score> + <Hsp_score>1477</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>302</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>302</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>266</Hsp_identity> + <Hsp_positive>289</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>302</Hsp_align-len> + <Hsp_qseq>MLTLDEFKNQAGNIDFQRTNMFSCVFATTPSAKSQQLLDQFGGMLFNNLPLNNDWLGLTQGEFTSGLTSIITAGTQQLVRKSGVSKYLIGAMSNRVVQSLLGEFEVGTYLLDFFNMAYPQSGLMIYSVKIPENRLSHEMDFNHNSPNIRITGRELDPLTISFRMDPEASNYRAMQDWVNSVQDPVTGLRALPTDVEADIQVNLHARNGLPHTVIMFTGCVPVACGAPELTYEGDNQIAVFDVTFAYRVMQTGAVGRQAALDWIEDRAVNSITGINSEMSLNGSLSRLSRLGGAAGGLSHVIN</Hsp_qseq> + <Hsp_hseq>MYTLDEFKNQAANIDFQRTNMFSCVFATTPSAKSQQLLDQFGGMLFNNLPLNNDWLGLTQGEFTQGLTNIITSGTRDLTRKSGVSKYLIGAMSNRVVQSLLGEFEVGTYLIDFFNMVYPQSGLMIYSVKIPENRLSHEMDFMHNSPNIKITGRDLEPLTVSFRMDPEASNYRAMQDWVNAVQDPVTGLRALPTDVEADIQVNLHARNGIPHTVIMFTGCIPISCGAPELTYEGDNQIAVFDVTFAYRVMQAGAVGRQAAIDWLEDKTVDSIDKINPDLSLNGSLSRLSRLGGAGGGISNIVN</Hsp_hseq> + <Hsp_midline>M TLDEFKNQA NIDFQRTNMFSCVFATTPSAKSQQLLDQFGGMLFNNLPLNNDWLGLTQGEFT GLT+IIT+GT+ L RKSGVSKYLIGAMSNRVVQSLLGEFEVGTYL+DFFNM YPQSGLMIYSVKIPENRLSHEMDF HNSPNI+ITGR+L+PLT+SFRMDPEASNYRAMQDWVN+VQDPVTGLRALPTDVEADIQVNLHARNG+PHTVIMFTGC+P++CGAPELTYEGDNQIAVFDVTFAYRVMQ GAVGRQAA+DW+ED+ V+SI IN ++SLNGSLSRLSRLGGA GG+S+++N</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>2</Hit_num> + <Hit_id>gi|311993189|ref|YP_004010055.1|</Hit_id> + <Hit_def>gp54 base plate tail tube initiator [Enterobacteria phage CC31] >gi|284178027|gb|ADB81693.1| gp54 base plate tail tube initiator [Enterobacteria phage CC31]</Hit_def> + <Hit_accession>YP_004010055</Hit_accession> + <Hit_len>320</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>539.265</Hsp_bit-score> + <Hsp_score>1388</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>314</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>320</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>258</Hsp_identity> + <Hsp_positive>286</Hsp_positive> + <Hsp_gaps>6</Hsp_gaps> + <Hsp_align-len>320</Hsp_align-len> + <Hsp_qseq>MLTLDEFKNQAGNIDFQRTNMFSCVFATTPSAKSQQLLDQFGGMLFNNLPLNNDWLGLTQGEFTSGLTSIITAGTQQLVRKSGVSKYLIGAMSNRVVQSLLGEFEVGTYLLDFFNMAYPQSGLMIYSVKIPENRLSHEMDFNHNSPNIRITGRELDPLTISFRMDPEASNYRAMQDWVNSVQDPVTGLRALPTDVEADIQVNLHARNGLPHTVIMFTGCVPVACGAPELTYEGDNQIAVFDVTFAYRVMQTGAVGRQAALDWIEDRAVNSITGINSEMSLNGSLSRLSRLGGAAGGLSHVINST------RNSTSKILGL</Hsp_qseq> + <Hsp_hseq>MLNLDEFNNQVMNVDFQRTNMFSCVFATSPSAKSQLLLDQFGGMLYNNLPVSGDWLGLSQGEFTQGLTSIITAGTQELVRKSGVSKYLIGAMTNRVVQSLLGEFEVGTYLLDFFNMAFPTSGLMIYSAKIPDNRLSHETDWLHNSPNIRITGRELEPLTLSFRMDSEASNWRAMQDWVNSVQDPVTGLRALPVDVEADIQVNLHARNGLPHTVCMFTGCVPVSCGSPEFTWDGDNQIAVFDVQFAYRVMQVGAVGRQAAADWVEDRLVHAIGNISDDMGLDSSLSRLSRLGGAAGGITQMGNAIGRKTGMWNSTSKILGL</Hsp_hseq> + <Hsp_midline>ML LDEF NQ N+DFQRTNMFSCVFAT+PSAKSQ LLDQFGGML+NNLP++ DWLGL+QGEFT GLTSIITAGTQ+LVRKSGVSKYLIGAM+NRVVQSLLGEFEVGTYLLDFFNMA+P SGLMIYS KIP+NRLSHE D+ HNSPNIRITGREL+PLT+SFRMD EASN+RAMQDWVNSVQDPVTGLRALP DVEADIQVNLHARNGLPHTV MFTGCVPV+CG+PE T++GDNQIAVFDV FAYRVMQ GAVGRQAA DW+EDR V++I I+ +M L+ SLSRLSRLGGAAGG++ + N+ NSTSKILGL</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>3</Hit_num> + <Hit_id>gi|589889940|ref|YP_009005476.1|</Hit_id> + <Hit_def>baseplate subunit [Enterobacter phage PG7] >gi|583927853|gb|AHI61115.1| baseplate subunit [Enterobacter phage PG7]</Hit_def> + <Hit_accession>YP_009005476</Hit_accession> + <Hit_len>320</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>535.798</Hsp_bit-score> + <Hsp_score>1379</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>314</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>320</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>257</Hsp_identity> + <Hsp_positive>285</Hsp_positive> + <Hsp_gaps>6</Hsp_gaps> + <Hsp_align-len>320</Hsp_align-len> + <Hsp_qseq>MLTLDEFKNQAGNIDFQRTNMFSCVFATTPSAKSQQLLDQFGGMLFNNLPLNNDWLGLTQGEFTSGLTSIITAGTQQLVRKSGVSKYLIGAMSNRVVQSLLGEFEVGTYLLDFFNMAYPQSGLMIYSVKIPENRLSHEMDFNHNSPNIRITGRELDPLTISFRMDPEASNYRAMQDWVNSVQDPVTGLRALPTDVEADIQVNLHARNGLPHTVIMFTGCVPVACGAPELTYEGDNQIAVFDVTFAYRVMQTGAVGRQAALDWIEDRAVNSITGINSEMSLNGSLSRLSRLGGAAGGLSHVINST------RNSTSKILGL</Hsp_qseq> + <Hsp_hseq>MLNLDEFNNQVMNVDFQRTNMFSCVFATTPSAKSQLLLDQFGGMLYNNLPVSGDWLGLSQGEFTQGITSIITAGTQELVRKSGVSKYLIGAMTNRVVQSLLGEFEVGTYLLDFFNMAFPTSGLMIYSAKIPDNRLSHETDWLHNSPNIRITGRELEPLTLSFRMDSEASNWRAMQDWVNSVQDPVTGLRALPVDVEADIQVNLHARNGLPHTVCMFTGCVPVSCGSPEFTWDGDNQIAVFDVQFAYRVMQVGAVGRQAAADWVEDRLVHAIGNISDDMGLDPSLSRLSRLGGAGGGITQMGNAIGRKTGMWNSTSKILGL</Hsp_hseq> + <Hsp_midline>ML LDEF NQ N+DFQRTNMFSCVFATTPSAKSQ LLDQFGGML+NNLP++ DWLGL+QGEFT G+TSIITAGTQ+LVRKSGVSKYLIGAM+NRVVQSLLGEFEVGTYLLDFFNMA+P SGLMIYS KIP+NRLSHE D+ HNSPNIRITGREL+PLT+SFRMD EASN+RAMQDWVNSVQDPVTGLRALP DVEADIQVNLHARNGLPHTV MFTGCVPV+CG+PE T++GDNQIAVFDV FAYRVMQ GAVGRQAA DW+EDR V++I I+ +M L+ SLSRLSRLGGA GG++ + N+ NSTSKILGL</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>4</Hit_num> + <Hit_id>gi|314121773|ref|YP_004063892.1|</Hit_id> + <Hit_def>gp54 baseplate subunit [Enterobacteria phage vB_EcoM-VR7] >gi|313151530|gb|ADR32586.1| gp54 baseplate subunit [Enterobacteria phage vB_EcoM-VR7]</Hit_def> + <Hit_accession>YP_004063892</Hit_accession> + <Hit_len>319</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>479.174</Hsp_bit-score> + <Hsp_score>1232</Hsp_score> + <Hsp_evalue>6.96493e-167</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>313</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>313</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>218</Hsp_identity> + <Hsp_positive>264</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>313</Hsp_align-len> + <Hsp_qseq>MLTLDEFKNQAGNIDFQRTNMFSCVFATTPSAKSQQLLDQFGGMLFNNLPLNNDWLGLTQGEFTSGLTSIITAGTQQLVRKSGVSKYLIGAMSNRVVQSLLGEFEVGTYLLDFFNMAYPQSGLMIYSVKIPENRLSHEMDFNHNSPNIRITGRELDPLTISFRMDPEASNYRAMQDWVNSVQDPVTGLRALPTDVEADIQVNLHARNGLPHTVIMFTGCVPVACGAPELTYEGDNQIAVFDVTFAYRVMQTGAVGRQAALDWIEDRAVNSITGINSEMSLNGSLSRLSRLGGAAGGLSHVINSTRNSTSKILG</Hsp_qseq> + <Hsp_hseq>MFTLQEFQTQAINIDLQRNNLFSVVFATAPSSKSQNLLDQFGGALFSNLPVNSDWFGLTQGDLTQGITTLVTAGTQKLIRKSGISKYLIGAMSNRVVQSLLGEFEVGTYLLDFFNMAYPTAGLLVHSVKLPDNTLNYEMDLNHNAPNIKITGREYSPLVLSFRMDSEAGNFRAFNDWVNSVQDPVTQLRALPEDVEADIQVNLHSRNGLPHTVVMLTGCVPVSVSAPELSYEGDNQIATFDVTFAYRVMSTGAVGRNAALEWLEDKVIKGVSGISSDNNLNAEVAKLSRLSGAQSGLTSLYNTFTGSGRAVSG</Hsp_hseq> + <Hsp_midline>M TL EF+ QA NID QR N+FS VFAT PS+KSQ LLDQFGG LF+NLP+N+DW GLTQG+ T G+T+++TAGTQ+L+RKSG+SKYLIGAMSNRVVQSLLGEFEVGTYLLDFFNMAYP +GL+++SVK+P+N L++EMD NHN+PNI+ITGRE PL +SFRMD EA N+RA DWVNSVQDPVT LRALP DVEADIQVNLH+RNGLPHTV+M TGCVPV+ APEL+YEGDNQIA FDVTFAYRVM TGAVGR AAL+W+ED+ + ++GI+S+ +LN +++LSRL GA GL+ + N+ S + G</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>5</Hit_num> + <Hit_id>gi|308814558|ref|YP_003934832.1|</Hit_id> + <Hit_def>baseplate tail tube initiator [Shigella phage SP18] >gi|308206150|gb|ADO19549.1| baseplate tail tube initiator [Shigella phage SP18]</Hit_def> + <Hit_accession>YP_003934832</Hit_accession> + <Hit_len>314</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>478.404</Hsp_bit-score> + <Hsp_score>1230</Hsp_score> + <Hsp_evalue>1.05147e-166</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>303</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>303</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>216</Hsp_identity> + <Hsp_positive>261</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>303</Hsp_align-len> + <Hsp_qseq>MLTLDEFKNQAGNIDFQRTNMFSCVFATTPSAKSQQLLDQFGGMLFNNLPLNNDWLGLTQGEFTSGLTSIITAGTQQLVRKSGVSKYLIGAMSNRVVQSLLGEFEVGTYLLDFFNMAYPQSGLMIYSVKIPENRLSHEMDFNHNSPNIRITGRELDPLTISFRMDPEASNYRAMQDWVNSVQDPVTGLRALPTDVEADIQVNLHARNGLPHTVIMFTGCVPVACGAPELTYEGDNQIAVFDVTFAYRVMQTGAVGRQAALDWIEDRAVNSITGINSEMSLNGSLSRLSRLGGAAGGLSHVINS</Hsp_qseq> + <Hsp_hseq>MFTLQEFQTQAINIDLQRNNLFSVVFATAPSSKSQNLLDQFGGALFSNLPVNSDWFGLTQGDLTQGITTLVTAGTQKLIRKSGISKYLIGAMSNRVVQSLLGEFEVGTYLLDFFNMAYPTAGLLVHSVKLPDNTLNYEMDLNHNAPNIKITGREYSPLVLSFRMDSEAGNFRAFNDWVNSVQDPVTQLRALPEDVEADIQVNLHSRNGLPHTVVMLTGCVPVSVSAPELSYEGDNQIATFDVTFAYRVMSTGAVGRAAALEWLEDKVIKGVSGISSDNNLNAEVAKLSRLSGAQSGLTSLYNT</Hsp_hseq> + <Hsp_midline>M TL EF+ QA NID QR N+FS VFAT PS+KSQ LLDQFGG LF+NLP+N+DW GLTQG+ T G+T+++TAGTQ+L+RKSG+SKYLIGAMSNRVVQSLLGEFEVGTYLLDFFNMAYP +GL+++SVK+P+N L++EMD NHN+PNI+ITGRE PL +SFRMD EA N+RA DWVNSVQDPVT LRALP DVEADIQVNLH+RNGLPHTV+M TGCVPV+ APEL+YEGDNQIA FDVTFAYRVM TGAVGR AAL+W+ED+ + ++GI+S+ +LN +++LSRL GA GL+ + N+</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>48094830</Statistics_db-num> + <Statistics_db-len>17186091396</Statistics_db-len> + <Statistics_hsp-len>147</Statistics_hsp-len> + <Statistics_eff-space>1689397281462</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>4</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>Merlin_4</Iteration_query-def> + <Iteration_query-len>351</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gi|456351276|ref|YP_007501228.1|</Hit_id> + <Hit_def>baseplate subunit [Salmonella phage S16] >gi|347466341|gb|AEO97127.1| baseplate subunit [Salmonella phage S16]</Hit_def> + <Hit_accession>YP_007501228</Hit_accession> + <Hit_len>350</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>590.882</Hsp_bit-score> + <Hsp_score>1522</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>350</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>291</Hsp_identity> + <Hsp_positive>319</Hsp_positive> + <Hsp_gaps>1</Hsp_gaps> + <Hsp_align-len>348</Hsp_align-len> + <Hsp_qseq>VRELDDKTDALIS-GVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSVVKSITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>VKELKDTAKELWNKGEKISAGQSSQSSKIKSTVTVQYPSERSAGNDVTGNLRVHDLYKNGLLFTAYDMNSRTSGDMRNMRLGELRRTSQDIVKSVTGKNTKQVDKIPVANILLPRSKSDVDSTSHKFNDVADSLISRGGGTATGVLSNVASTAVFGALESVTQGLMADNNEQIYNTARSMYAGADNRTKVFTWDLTPRSVHDLIAIVEIYEYFNYYSYGETGNSTFAKEVKSTLDEWYKSTFLDTLTPTGAPQNDTVFEKITSFLSNVIVVSNPTVWYVRNFGNTSKFDGKTDIFGPCQIQSIRFDKTPNGVFNGLAVAPNLPSTFTLEITMREILTLNRSSIYSEGF</Hsp_hseq> + <Hsp_midline>V+EL D L + G K SAGQSSQS+KIKST+T QYPSERSAGND +G+LRVHDLYKNGLLFTAYDMNSRT+GDMR+MRLGE++RT+ +VKS+TG NT +VDKIPV NILLPRSKSDV+S SHKFNDV DSLISRGGGTATGVLSNVASTAVFG LES+TQGLMAD+NEQIYNTARSMY GADNRTKVFTWDLTPRSV DLIAI+EIYEYFNYYSYGETG ST+AKEVKS LDEWYKSTFLDTLTP A +NDTVFEKITSFLSNVIVVSNPTVW+VRNFG TSKFDG+ ++FGPCQIQSIRFDKTPNG FNGLA+APNLPSTFTLEITMREILTLNR+S+Y+EGF</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>2</Hit_num> + <Hit_id>gi|408387125|gb|AFU64134.1|</Hit_id> + <Hit_def>baseplate tail tube cap [Salmonella phage STML-198]</Hit_def> + <Hit_accession>AFU64134</Hit_accession> + <Hit_len>350</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>590.497</Hsp_bit-score> + <Hsp_score>1521</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>350</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>291</Hsp_identity> + <Hsp_positive>319</Hsp_positive> + <Hsp_gaps>1</Hsp_gaps> + <Hsp_align-len>348</Hsp_align-len> + <Hsp_qseq>VRELDDKTDALIS-GVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSVVKSITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>VKELKDTAKELWNKGEKISAGQSSQSSKIKSTVTVQYPSERSAGNDVTGNLRVHDLYKNGLLFTAYDMNSRTSGDMRNMRLGELRRTSQDIVKSVTGKNTKQVDKIPVANILLPRSKSDVDSTSHKFNDVADSLISRGGGTATGVLSNVASTAVFGALESVTQGLMADNNEQIYNTARSMYAGADNRTKVFTWDLTPRSVHDLIAIVEIYEYFNYYSYGETGNSTFAKEVKSTLDEWYKSTFLDTLTPTGAPQNDTVFEKITSFLSNVIVVSNPTVWYVRNFGNTSKFDGKTDIFGPCQIQSIRFDKTPNGIFNGLAVAPNLPSTFTLEITMREILTLNRSSIYSEGF</Hsp_hseq> + <Hsp_midline>V+EL D L + G K SAGQSSQS+KIKST+T QYPSERSAGND +G+LRVHDLYKNGLLFTAYDMNSRT+GDMR+MRLGE++RT+ +VKS+TG NT +VDKIPV NILLPRSKSDV+S SHKFNDV DSLISRGGGTATGVLSNVASTAVFG LES+TQGLMAD+NEQIYNTARSMY GADNRTKVFTWDLTPRSV DLIAI+EIYEYFNYYSYGETG ST+AKEVKS LDEWYKSTFLDTLTP A +NDTVFEKITSFLSNVIVVSNPTVW+VRNFG TSKFDG+ ++FGPCQIQSIRFDKTPNG FNGLA+APNLPSTFTLEITMREILTLNR+S+Y+EGF</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>3</Hit_num> + <Hit_id>gi|311993188|ref|YP_004010054.1|</Hit_id> + <Hit_def>gp48 base plate tail tube cap [Enterobacteria phage CC31] >gi|284178026|gb|ADB81692.1| gp48 base plate tail tube cap [Enterobacteria phage CC31]</Hit_def> + <Hit_accession>YP_004010054</Hit_accession> + <Hit_len>349</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>559.296</Hsp_bit-score> + <Hsp_score>1440</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>349</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>270</Hsp_identity> + <Hsp_positive>310</Hsp_positive> + <Hsp_gaps>2</Hsp_gaps> + <Hsp_align-len>351</Hsp_align-len> + <Hsp_qseq>MSIKVRELDDKTDALISGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSVVKSITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>MAIRATEILDK--AFGSGEKTSAGQSSISSTRRSTVTAQYPAERSAGNDAAGDLRVHDLYKNGLLFTAYDMSSRTTPDLRSMRQSQLSKSASSILNSLGIKNNGQVDKSPIANILLPRSKSDVESISHKFNDVGDSLMTRGNNSATGVLSNVASTAVFGALDSITQGLMADNNEQIYNTARSMYAGADNRTKVFTWDLTPRSVADLVSIIQIYEYFNYFSYGETGNSTYAKELKGQLDEWYKTTLLSPLTPDGADLNNTMFENITSFLSNVIVVTNPTVWFIRNFGKTSKFDGRAEVFGPCQIQSIRFDKTPNGQFNGLAIAPNMPSTFTLEITFREILTLNRASLYAEGF</Hsp_hseq> + <Hsp_midline>M+I+ E+ DK A SG KTSAGQSS S+ +ST+TAQYP+ERSAGND +G LRVHDLYKNGLLFTAYDM+SRTT D+RSMR ++ ++A+S++ S+ N +VDK P+ NILLPRSKSDVES+SHKFNDVGDSL++RG +ATGVLSNVASTAVFG L+S+TQGLMAD+NEQIYNTARSMY GADNRTKVFTWDLTPRSV DL++II+IYEYFNY+SYGETG STYAKE+K QLDEWYK+T L LTPD A+ N+T+FE ITSFLSNVIVV+NPTVWF+RNFG TSKFDGRAEVFGPCQIQSIRFDKTPNG FNGLAIAPN+PSTFTLEIT REILTLNRAS+YAEGF</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>4</Hit_num> + <Hit_id>gi|589889939|ref|YP_009005475.1|</Hit_id> + <Hit_def>baseplate subunit [Enterobacter phage PG7] >gi|583927852|gb|AHI61114.1| baseplate subunit [Enterobacter phage PG7]</Hit_def> + <Hit_accession>YP_009005475</Hit_accession> + <Hit_len>349</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>536.954</Hsp_bit-score> + <Hsp_score>1382</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>349</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>260</Hsp_identity> + <Hsp_positive>305</Hsp_positive> + <Hsp_gaps>2</Hsp_gaps> + <Hsp_align-len>351</Hsp_align-len> + <Hsp_qseq>MSIKVRELDDKTDALISGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSVVKSITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>MAIRATEILDKD--FGSGEKTSAGQSSISSTRRSTIVAQYPAQRAAGNDAAGDLRVHDLYKNGLLFTAYDMSSRTSPDLRNMRQSQLSKSASSILNSLGIKNNGQVDKSPIANILLPRSKSDVESTSHKFNDVGESLITRGNNSATGVLSNVASTAVFGALDSVTQGLMADNNEQIYNTARSMYAGADNRTKVFTWDLTPRSVADLVSIIQIYECFNYFSYGETGNSSYAKELKGQLDEWYKTTLLSPLTPDGADLNNTMFENITSFLSNVIVVTNPTVWFIRNFGKTSKFDGRTELFGPCQIQSIRFDKTPNGQFNGLAIAPNMPSTFTLEITFREILTLSRASLYAEGF</Hsp_hseq> + <Hsp_midline>M+I+ E+ DK SG KTSAGQSS S+ +STI AQYP++R+AGND +G LRVHDLYKNGLLFTAYDM+SRT+ D+R+MR ++ ++A+S++ S+ N +VDK P+ NILLPRSKSDVES SHKFNDVG+SLI+RG +ATGVLSNVASTAVFG L+S+TQGLMAD+NEQIYNTARSMY GADNRTKVFTWDLTPRSV DL++II+IYE FNY+SYGETG S+YAKE+K QLDEWYK+T L LTPD A+ N+T+FE ITSFLSNVIVV+NPTVWF+RNFG TSKFDGR E+FGPCQIQSIRFDKTPNG FNGLAIAPN+PSTFTLEIT REILTL+RAS+YAEGF</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>5</Hit_num> + <Hit_id>gi|414086559|ref|YP_006986748.1|</Hit_id> + <Hit_def>baseplate tail tube cap [Enterobacteria phage vB_EcoM_ACG-C40] >gi|383396340|gb|AFH20156.1| baseplate tail tube cap [Enterobacteria phage vB_EcoM_ACG-C40]</Hit_def> + <Hit_accession>YP_006986748</Hit_accession> + <Hit_len>364</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>494.197</Hsp_bit-score> + <Hsp_score>1271</Hsp_score> + <Hsp_evalue>1.69091e-171</Hsp_evalue> + <Hsp_query-from>17</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>15</Hsp_hit-from> + <Hsp_hit-to>364</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>236</Hsp_identity> + <Hsp_positive>287</Hsp_positive> + <Hsp_gaps>15</Hsp_gaps> + <Hsp_align-len>350</Hsp_align-len> + <Hsp_qseq>SGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMR------LGEMKRTANSVVKS---------ITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>SGETISAGQSTKSEVGTKTYTAQFPTGRASGNDTTGDFQVTDLYKNGLLFTAYNMSSRDSGSLRTMRSNYSSSSSSILRTARNTISNTVSKLSNGLISDNNSGTISKVPVANILLPRSKSDVDTSSHRFNDVQDSLITKGGGTATGVLSNMASTAVFGALESITQGIMADNNEQIYTTARSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFNYFSYGETGKSQYAAEIKGYLDEWYRSTFIEPLTPEDAVKNKTLFEKMTSSLTNVLVVSNPTIWMVKNFGATSKFDGKTEIFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREIITLNRASLYAGTF</Hsp_hseq> + <Hsp_midline>SG SAGQS++S T TAQ+P+ R++GNDT+G +V DLYKNGLLFTAY+M+SR +G +R+MR + RTA + + + I+ N+ + K+PV NILLPRSKSDV++ SH+FNDV DSLI++GGGTATGVLSN+ASTAVFG LES+TQG+MAD+NEQIY TARSMYGGA+NRTKVFTWDLTPRS +DL+AII IY+YFNY+SYGETG S YA E+K LDEWY+STF++ LTP++A KN T+FEK+TS L+NV+VVSNPT+W V+NFG TSKFDG+ E+FGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREI+TLNRAS+YA F</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>6</Hit_num> + <Hit_id>gi|431809133|ref|YP_007236030.1|</Hit_id> + <Hit_def>phage baseplate tail tube cap (T4-like gp48) [Yersinia phage phiR1-RT] >gi|398313422|emb|CCI88771.1| phage baseplate tail tube cap (T4-like gp48) [Yersinia phage phiR1-RT]</Hit_def> + <Hit_accession>YP_007236030</Hit_accession> + <Hit_len>348</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>492.656</Hsp_bit-score> + <Hsp_score>1267</Hsp_score> + <Hsp_evalue>3.88245e-171</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>347</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>242</Hsp_identity> + <Hsp_positive>290</Hsp_positive> + <Hsp_gaps>6</Hsp_gaps> + <Hsp_align-len>352</Hsp_align-len> + <Hsp_qseq>MSIKVRELDDKTDALISGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSVVKSI-TGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>MSIRATEITEST-IKSAGISTSAGQVTQSTAIK-TIQAQFPAERASGNDSTLDLQITDLYKNGLLFTAYDFTSRTSPDLRQNR-ADIQIAAQKKPSSIFTGTKT--VQQTPVANILLPRSKSDVDNTSHKFNDVGESLVTRGGGNATGILSNMASTAVFGALESLTQGYMSDHGEQIYNTARSMYGGADNRQKVFTWDLTPRNVQDLVQIIKIYETFNYYSYGQTGSSSFAKGLKGDLDTWYKNTFLKNMTPDGANLDNTMFEQITSFLTNVIVVSNPTVWYVRNFGATSSFDGRADVFGPCQIASIRFDKSPNGHFNGLAIAPNLPSTFVLEITFREILTLNRNSLYAGGL</Hsp_hseq> + <Hsp_midline>MSI+ E+ + T +G+ TSAGQ +QS IK TI AQ+P+ER++GND++ L++ DLYKNGLLFTAYD SRT+ D+R R +++ A SI TGT T V + PV NILLPRSKSDV++ SHKFNDVG+SL++RGGG ATG+LSN+ASTAVFG LESLTQG M+DH EQIYNTARSMYGGADNR KVFTWDLTPR+VQDL+ II+IYE FNYYSYG+TG+S++AK +K LD WYK+TFL +TPD AN ++T+FE+ITSFL+NVIVVSNPTVW+VRNFG TS FDGRA+VFGPCQI SIRFDK+PNG+FNGLAIAPNLPSTF LEIT REILTLNR S+YA G </Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>7</Hit_num> + <Hit_id>gi|228861125|ref|YP_002854148.1|</Hit_id> + <Hit_def>gp48 base plate [Enterobacteria phage RB51] >gi|422934973|ref|YP_007004933.1| baseplate tail tube cap [Escherichia phage wV7] >gi|227438799|gb|ACP31111.1| gp48 base plate [Enterobacteria phage RB51] >gi|291290411|dbj|BAI83206.1| baseplate tail tube cap [Enterobacteria phage AR1] >gi|343177527|gb|AEM00853.1| baseplate tail tube cap [Escherichia phage wV7]</Hit_def> + <Hit_accession>YP_002854148</Hit_accession> + <Hit_len>364</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>491.5</Hsp_bit-score> + <Hsp_score>1264</Hsp_score> + <Hsp_evalue>1.72752e-170</Hsp_evalue> + <Hsp_query-from>17</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>15</Hsp_hit-from> + <Hsp_hit-to>364</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>235</Hsp_identity> + <Hsp_positive>286</Hsp_positive> + <Hsp_gaps>15</Hsp_gaps> + <Hsp_align-len>350</Hsp_align-len> + <Hsp_qseq>SGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMR------LGEMKRTANSVVKS---------ITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>SGETISAGQSTKSEVGTKTYTAQFPTGRASGNDTTGDFQVTDLYKNGLLFTAYNMSSRDSGSLRTMRSNYSSSSSSILRTARNTISNTVSKLSNGLISDNNSGTISKVPVANILLPRSKSDVDTSSHRFNDVQDSLITKGGGTATGVLSNMASTAVFGALESITQGIMADNNEQIYTTARSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFNYFSYGETGKSQYAAEIKGYLDEWYRSTFIEPLTPEDAIKNKTLFEKMTSSLTNVLVVSNPTIWMVKNFGATSKFDGKTEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSSFTLEITMREIITLNRASLYTGTF</Hsp_hseq> + <Hsp_midline>SG SAGQS++S T TAQ+P+ R++GNDT+G +V DLYKNGLLFTAY+M+SR +G +R+MR + RTA + + + I+ N+ + K+PV NILLPRSKSDV++ SH+FNDV DSLI++GGGTATGVLSN+ASTAVFG LES+TQG+MAD+NEQIY TARSMYGGA+NRTKVFTWDLTPRS +DL+AII IY+YFNY+SYGETG S YA E+K LDEWY+STF++ LTP++A KN T+FEK+TS L+NV+VVSNPT+W V+NFG TSKFDG+ EVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPS+FTLEITMREI+TLNRAS+Y F</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>8</Hit_num> + <Hit_id>gi|116326413|ref|YP_803133.1|</Hit_id> + <Hit_def>base plate [Enterobacteria phage RB32] >gi|228861506|ref|YP_002854527.1| gp48 base plate [Enterobacteria phage RB14] >gi|115344006|gb|ABI95015.1| base plate [Enterobacteria phage RB32] >gi|227438522|gb|ACP30835.1| gp48 base plate [Enterobacteria phage RB14] >gi|398313741|emb|CCI89088.1| phage baseplate tail tube cap (T4-like gp48) [Yersinia phage phiD1] >gi|525334459|gb|AGR46141.1| baseplate tail tube cap [Yersinia phage PST]</Hit_def> + <Hit_accession>YP_803133</Hit_accession> + <Hit_len>364</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>488.419</Hsp_bit-score> + <Hsp_score>1256</Hsp_score> + <Hsp_evalue>3.32248e-169</Hsp_evalue> + <Hsp_query-from>17</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>15</Hsp_hit-from> + <Hsp_hit-to>364</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>237</Hsp_identity> + <Hsp_positive>286</Hsp_positive> + <Hsp_gaps>15</Hsp_gaps> + <Hsp_align-len>350</Hsp_align-len> + <Hsp_qseq>SGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGE------MKRTANSVVKS---------ITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>SGEKISAGQSTKSEVGTKTYTAQFPTGRASGNDTTGDFQVTDLYKNGLLFTAYNMSSRDSGSLRSMRSNYSSSSSSILRTARNTISSTVSKLSNGLISNNNSGTISKAPIANILLPRSKSDVDTSSHRFNDVQESLISRGGGTATGVLSNIASTAVFGALESITQGIMADNNEQIYTTARSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFNYFSYGETGKSQYAAEIKGYLDDWYRSTLIEPLSPEDAAKNKTLFEKMTSSLTNVLVVSNPTVWMVKNFGATSKFDGKTEIFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREIITLNRASLYAGTF</Hsp_hseq> + <Hsp_midline>SG K SAGQS++S T TAQ+P+ R++GNDT+G +V DLYKNGLLFTAY+M+SR +G +RSMR + RTA + + S I+ N+ + K P+ NILLPRSKSDV++ SH+FNDV +SLISRGGGTATGVLSN+ASTAVFG LES+TQG+MAD+NEQIY TARSMYGGA+NRTKVFTWDLTPRS +DL+AII IY+YFNY+SYGETG S YA E+K LD+WY+ST ++ L+P++A KN T+FEK+TS L+NV+VVSNPTVW V+NFG TSKFDG+ E+FGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREI+TLNRAS+YA F</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>9</Hit_num> + <Hit_id>gi|639438843|ref|YP_009030800.1|</Hit_id> + <Hit_def>baseplate tail tube cap [Escherichia phage e11/2] >gi|628971671|gb|AHY83393.1| baseplate tail tube cap [Escherichia phage e11/2]</Hit_def> + <Hit_accession>YP_009030800</Hit_accession> + <Hit_len>364</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>486.878</Hsp_bit-score> + <Hsp_score>1252</Hsp_score> + <Hsp_evalue>1.3135e-168</Hsp_evalue> + <Hsp_query-from>17</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>15</Hsp_hit-from> + <Hsp_hit-to>364</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>236</Hsp_identity> + <Hsp_positive>286</Hsp_positive> + <Hsp_gaps>15</Hsp_gaps> + <Hsp_align-len>350</Hsp_align-len> + <Hsp_qseq>SGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGE------MKRTANSVVKS---------ITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>SGEKISAGQSTKSEVGTKTYTAQFPTGRASGNDTTGDFQVTDLYKNGLLFTAYNMSSRDSGSLRSMRSNYSSSSSSILRTARNTISNTVSKLSNGLISNNNSGTISKAPIANILLPRSKSDVDTSSHRFNDVQESLISRGGGTATGVLSNIASTAVFGALESITQGIMADNNEQIYTTARSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFNYFSYGETGKSQYAAEIKGYLDDWYRSTLIEPLSPEDAAKNKTLFEKMTSSLTNVLVVSNPTVWMVKNFGATSKFDGKTEIFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREIITLNRASLYAGTF</Hsp_hseq> + <Hsp_midline>SG K SAGQS++S T TAQ+P+ R++GNDT+G +V DLYKNGLLFTAY+M+SR +G +RSMR + RTA + + + I+ N+ + K P+ NILLPRSKSDV++ SH+FNDV +SLISRGGGTATGVLSN+ASTAVFG LES+TQG+MAD+NEQIY TARSMYGGA+NRTKVFTWDLTPRS +DL+AII IY+YFNY+SYGETG S YA E+K LD+WY+ST ++ L+P++A KN T+FEK+TS L+NV+VVSNPTVW V+NFG TSKFDG+ E+FGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREI+TLNRAS+YA F</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>10</Hit_num> + <Hit_id>gi|330858711|ref|YP_004415086.1|</Hit_id> + <Hit_def>putative baseplate tail tube cap [Shigella phage Shfl2] >gi|422934608|ref|YP_007004569.1| phage baseplate protein [Enterobacteria phage ime09] >gi|327397645|gb|AEA73147.1| putative baseplate tail tube cap [Shigella phage Shfl2] >gi|339791391|gb|AEK12448.1| phage baseplate protein [Enterobacteria phage ime09]</Hit_def> + <Hit_accession>YP_004415086</Hit_accession> + <Hit_len>364</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>486.493</Hsp_bit-score> + <Hsp_score>1251</Hsp_score> + <Hsp_evalue>1.49721e-168</Hsp_evalue> + <Hsp_query-from>17</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>15</Hsp_hit-from> + <Hsp_hit-to>364</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>236</Hsp_identity> + <Hsp_positive>284</Hsp_positive> + <Hsp_gaps>15</Hsp_gaps> + <Hsp_align-len>350</Hsp_align-len> + <Hsp_qseq>SGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKR------TANSVVKS---------ITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>SGEKISAGQSTKSEVATKTYTAQFPTGRASGNDTTGDFQVTDLYKNGLLFTAYNMSSRDSGSLRSMRSNYSSSSSSILSTARNTISSTVSKLSNGLISNNNSGTISKAPVANILLPRSKSDVDTSSHRFNDVQESLISRGGGTATGVLSNIASTAVFGALESITQGIMADNNEQIYTTARSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFNYFSYGETGKSQYAAEIKGYLDDWYRSTLIEPLSPEDAAKNKTLFEKMTSSLTNVLVVSNPTIWMVKNFGATSKFDGKTEIFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREIITLNRASLYAGTF</Hsp_hseq> + <Hsp_midline>SG K SAGQS++S T TAQ+P+ R++GNDT+G +V DLYKNGLLFTAY+M+SR +G +RSMR TA + + S I+ N+ + K PV NILLPRSKSDV++ SH+FNDV +SLISRGGGTATGVLSN+ASTAVFG LES+TQG+MAD+NEQIY TARSMYGGA+NRTKVFTWDLTPRS +DL+AII IY+YFNY+SYGETG S YA E+K LD+WY+ST ++ L+P++A KN T+FEK+TS L+NV+VVSNPT+W V+NFG TSKFDG+ E+FGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREI+TLNRAS+YA F</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>11</Hit_num> + <Hit_id>gi|397134210|gb|AFO10717.1|</Hit_id> + <Hit_def>baseplate protein [Escherichia phage ECML-134]</Hit_def> + <Hit_accession>AFO10717</Hit_accession> + <Hit_len>364</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>485.337</Hsp_bit-score> + <Hsp_score>1248</Hsp_score> + <Hsp_evalue>4.36088e-168</Hsp_evalue> + <Hsp_query-from>17</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>15</Hsp_hit-from> + <Hsp_hit-to>364</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>236</Hsp_identity> + <Hsp_positive>285</Hsp_positive> + <Hsp_gaps>15</Hsp_gaps> + <Hsp_align-len>350</Hsp_align-len> + <Hsp_qseq>SGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGE------MKRTANSVVKS---------ITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>SGEKISAGQSTKSEVGTKTYTAQFPTGRASGNDTTGDFQVTDLYKNGLLFTAYNMSSRDSGSLRSMRSNYSSSSSSILRTARNTISSTVSKLSNGLISNNNSGTISKSPIANTLLPRSKSDVDTSSHRFNDVQESLISRGGGTATGVLSNIASTAVFGALESITQGIMADNNEQIYTTARSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFNYFSYGETGKSQYAAEIKGYLDDWYRSTLIEPLSPEDAAKNKTLFEKMTSSLTNVLVVSNPTVWMVKNFGATSKFDGKTEIFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREIITLNRASLYAGTF</Hsp_hseq> + <Hsp_midline>SG K SAGQS++S T TAQ+P+ R++GNDT+G +V DLYKNGLLFTAY+M+SR +G +RSMR + RTA + + S I+ N+ + K P+ N LLPRSKSDV++ SH+FNDV +SLISRGGGTATGVLSN+ASTAVFG LES+TQG+MAD+NEQIY TARSMYGGA+NRTKVFTWDLTPRS +DL+AII IY+YFNY+SYGETG S YA E+K LD+WY+ST ++ L+P++A KN T+FEK+TS L+NV+VVSNPTVW V+NFG TSKFDG+ E+FGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREI+TLNRAS+YA F</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>12</Hit_num> + <Hit_id>gi|9632645|ref|NP_049806.1|</Hit_id> + <Hit_def>gp48 baseplate tail tube cap [Enterobacteria phage T4] >gi|138041|sp|P13339.3|VG48_BPT4 RecName: Full=Tail-tube assembly protein Gp48 [Enterobacteria phage T4] >gi|5354269|gb|AAD42476.1|AF158101_63 gp48 baseplate tail tube cap [Enterobacteria phage T4] >gi|215947|gb|AAA32539.1| tail-tube assembly protein [Enterobacteria phage T4] >gi|299780554|gb|ADJ39916.1| baseplate subunit [Enterobacteria phage T4T] >gi|628971799|gb|AHY83520.1| baseplate subunit [Enterobacteria phage T4] >gi|628972001|gb|AHY83721.1| baseplate subunit [Enterobacteria phage T4] >gi|628972192|gb|AHY83911.1| baseplate subunit [Enterobacteria phage T4]</Hit_def> + <Hit_accession>NP_049806</Hit_accession> + <Hit_len>364</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>484.567</Hsp_bit-score> + <Hsp_score>1246</Hsp_score> + <Hsp_evalue>8.86163e-168</Hsp_evalue> + <Hsp_query-from>17</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>15</Hsp_hit-from> + <Hsp_hit-to>364</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>236</Hsp_identity> + <Hsp_positive>285</Hsp_positive> + <Hsp_gaps>15</Hsp_gaps> + <Hsp_align-len>350</Hsp_align-len> + <Hsp_qseq>SGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGE------MKRTANSVVKS---------ITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>SGEKISAGQSTKSEVGTKTYTAQFPTGRASGNDTTEDFQVTDLYKNGLLFTAYNMSSRDSGSLRSMRSNYSSSSSSILRTARNTISSTVSKLSNGLISNNNSGTISKSPIANILLPRSKSDVDTSSHRFNDVQESLISRGGGTATGVLSNIASTAVFGALESITQGIMADNNEQIYTTARSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFNYFSYGETGKSQYAAEIKGYLDDWYRSTLIEPLSPEDAAKNKTLFEKMTSSLTNVLVVSNPTVWMVKNFGATSKFDGKTEIFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREIITLNRASLYAGTF</Hsp_hseq> + <Hsp_midline>SG K SAGQS++S T TAQ+P+ R++GNDT+ +V DLYKNGLLFTAY+M+SR +G +RSMR + RTA + + S I+ N+ + K P+ NILLPRSKSDV++ SH+FNDV +SLISRGGGTATGVLSN+ASTAVFG LES+TQG+MAD+NEQIY TARSMYGGA+NRTKVFTWDLTPRS +DL+AII IY+YFNY+SYGETG S YA E+K LD+WY+ST ++ L+P++A KN T+FEK+TS L+NV+VVSNPTVW V+NFG TSKFDG+ E+FGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREI+TLNRAS+YA F</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>13</Hit_num> + <Hit_id>gi|642905805|ref|YP_009037574.1|</Hit_id> + <Hit_def>baseplate subunit [Escherichia phage vB_EcoM_JS09] >gi|642903959|gb|AIA79979.1| baseplate subunit [Escherichia phage vB_EcoM_JS09]</Hit_def> + <Hit_accession>YP_009037574</Hit_accession> + <Hit_len>369</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>484.952</Hsp_bit-score> + <Hsp_score>1247</Hsp_score> + <Hsp_evalue>9.36795e-168</Hsp_evalue> + <Hsp_query-from>19</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>20</Hsp_hit-from> + <Hsp_hit-to>369</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>227</Hsp_identity> + <Hsp_positive>285</Hsp_positive> + <Hsp_gaps>17</Hsp_gaps> + <Hsp_align-len>350</Hsp_align-len> + <Hsp_qseq>VKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSVVKSIT-----------------GTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>VSESAGQSTKTETTTKTYVAQFPTGRAAGNDSTGDFQVTDLYKNGLLFTAYNMSARDSGSLRNLRPAYAGTSSNGIISDLTDNVKDAVTKFSNGLLPAGANKSTINKTPVANILLPRSKSDVDTTSHRFNDVGDSLITKGGGTATGVLSNIASTAVFGALDSITQGLMADNNEQIYTTSRSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFNYFSYGETGKSQYAQEIKSYLDEWYRSTFIEPMTPDDAVKNKTLFEKITASLTNVLVVSNPTIWMVKNFGYTSKFDGLTDVFGPCQIQSVRFDKTPNGQFNGLAVAPNLPSTFTLEITMREIITLNRSSLYAGTF</Hsp_hseq> + <Hsp_midline>V SAGQS+++ T AQ+P+ R+AGND++G +V DLYKNGLLFTAY+M++R +G +R++R ++N ++ +T G N + ++K PV NILLPRSKSDV++ SH+FNDVGDSLI++GGGTATGVLSN+ASTAVFG L+S+TQGLMAD+NEQIY T+RSMYGGA+NRTKVFTWDLTPRS +DL+AII IY+YFNY+SYGETG S YA+E+KS LDEWY+STF++ +TPD+A KN T+FEKIT+ L+NV+VVSNPT+W V+NFG TSKFDG +VFGPCQIQS+RFDKTPNG FNGLA+APNLPSTFTLEITMREI+TLNR+S+YA F</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>14</Hit_num> + <Hit_id>gi|32453688|ref|NP_861897.1|</Hit_id> + <Hit_def>baseplate subunit [Enterobacteria phage RB69] >gi|32350507|gb|AAP76106.1| gp48 baseplate tail tube cap [Enterobacteria phage RB69] >gi|604671902|gb|AHV82896.1| baseplate tail tube cap [Escherichia phage vB_EcoM_PhAPEC2]</Hit_def> + <Hit_accession>NP_861897</Hit_accession> + <Hit_len>369</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>484.567</Hsp_bit-score> + <Hsp_score>1246</Hsp_score> + <Hsp_evalue>1.0678e-167</Hsp_evalue> + <Hsp_query-from>19</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>20</Hsp_hit-from> + <Hsp_hit-to>369</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>226</Hsp_identity> + <Hsp_positive>285</Hsp_positive> + <Hsp_gaps>17</Hsp_gaps> + <Hsp_align-len>350</Hsp_align-len> + <Hsp_qseq>VKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSVVKSIT-----------------GTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>VSESAGQSTKTETTTKTYVAQFPTGRAAGNDSTGDFQVTDLYKNGLLFTAYNMSARDSGSLRNLRPAYAGTSSNGIISDLTDNVKDAVTKFSNGLLPAGANKSTINKTPVANILLPRSKSDVDTTSHRFNDIGDSLITKGGGTATGVLSNIASTAVFGALDSITQGLMADNNEQIYTTSRSMYGGAENRTKVFTWDLTPRSTEDLMAIINIYQYFNYFSYGETGKSQYAQEIKSYLDEWYRSTFIEPMTPDDAVKNKTLFEKITASLTNVLVVSNPTIWMVKNFGHTSKFDGLTDVFGPCQIQSVRFDKTPNGQFNGLAVAPNLPSTFTLEITMREIITLNRSSLYAGTF</Hsp_hseq> + <Hsp_midline>V SAGQS+++ T AQ+P+ R+AGND++G +V DLYKNGLLFTAY+M++R +G +R++R ++N ++ +T G N + ++K PV NILLPRSKSDV++ SH+FND+GDSLI++GGGTATGVLSN+ASTAVFG L+S+TQGLMAD+NEQIY T+RSMYGGA+NRTKVFTWDLTPRS +DL+AII IY+YFNY+SYGETG S YA+E+KS LDEWY+STF++ +TPD+A KN T+FEKIT+ L+NV+VVSNPT+W V+NFG TSKFDG +VFGPCQIQS+RFDKTPNG FNGLA+APNLPSTFTLEITMREI+TLNR+S+YA F</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>15</Hit_num> + <Hit_id>gi|314121772|ref|YP_004063891.1|</Hit_id> + <Hit_def>gp48 baseplate subunit [Enterobacteria phage vB_EcoM-VR7] >gi|313151529|gb|ADR32585.1| gp48 baseplate subunit [Enterobacteria phage vB_EcoM-VR7]</Hit_def> + <Hit_accession>YP_004063891</Hit_accession> + <Hit_len>368</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>461.84</Hsp_bit-score> + <Hsp_score>1187</Hsp_score> + <Hsp_evalue>1.08287e-158</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>368</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>228</Hsp_identity> + <Hsp_positive>285</Hsp_positive> + <Hsp_gaps>21</Hsp_gaps> + <Hsp_align-len>369</Hsp_align-len> + <Hsp_qseq>IKVRELD---DKTDALISGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMR---LGEMKRTANSV----VKSIT----------GTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>MKVKELDFDFDIAGLFNGGSKTSAGQS-KAAQTQATIVAQYPAERASGNDSSDDMRVNDLYKNGLLFTAYNFSSRTSPELRSDRSSQLTSLKKVSNGASFNPVKSLTSFAKSKLTGSGSTGKSFDSNAVANILLPRSKSDVESVSHRFNDVGESLITKGGGSATGILSNIASTAVFGALESVTNGVMADHGEQIYTTARSMYAGPDNRTKVYTWEMTPRSAQDLIQIVKIYEIFNYYSYGETGKSSFASELKDKIDTWYKSTFPSKRKAIDNFDGKLLGEEITSFLTNVLVVSNPTIWYIRNFGDTSSYDGRGELFGPCQIQSIRFDKSPDGHFGGLAIAPNLPSTFVLEITFREIITLNRGSLYAEGF</Hsp_hseq> + <Hsp_midline>+KV+ELD D G KTSAGQS ++A+ ++TI AQYP+ER++GND+S +RV+DLYKNGLLFTAY+ +SRT+ ++RS R L +K+ +N VKS+T G+ D V NILLPRSKSDVESVSH+FNDVG+SLI++GGG+ATG+LSN+ASTAVFG LES+T G+MADH EQIY TARSMY G DNRTKV+TW++TPRS QDLI I++IYE FNYYSYGETG S++A E+K ++D WYKSTF + + E+ITSFL+NV+VVSNPT+W++RNFG TS +DGR E+FGPCQIQSIRFDK+P+G+F GLAIAPNLPSTF LEIT REI+TLNR S+YAEGF</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>16</Hit_num> + <Hit_id>gi|308814557|ref|YP_003934831.1|</Hit_id> + <Hit_def>baseplate tail tube cap [Shigella phage SP18] >gi|308206149|gb|ADO19548.1| baseplate tail tube cap [Shigella phage SP18]</Hit_def> + <Hit_accession>YP_003934831</Hit_accession> + <Hit_len>362</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>460.299</Hsp_bit-score> + <Hsp_score>1183</Hsp_score> + <Hsp_evalue>3.47109e-158</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>362</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>228</Hsp_identity> + <Hsp_positive>285</Hsp_positive> + <Hsp_gaps>21</Hsp_gaps> + <Hsp_align-len>366</Hsp_align-len> + <Hsp_qseq>IKVRELDDKTDALISGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMR---LGEMKRTANSV----VKSIT----------GTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>MKVKELD-IAGLFNGGSKTSAGQS-KAAQTQATIVAQYPAERASGNDSSDDMRVNDLYKNGLLFTAYNFSSRTSPELRSDRSSQLTSLKKVSNGASFNPVKSLTSFAKSKLTGAGSTGKSFDSNAVANILLPRSKSDVESVSHRFNDVGESLITKGGGSATGILSNIASTAVFGALESVTNGVMADHGEQIYTTARSMYAGPDNRTKVYTWEMTPRSAQDLIQIVKIYEIFNYYSYGETGKSSFASELKEKIDTWYKSTFKKEAIDNFDGK--LLGEEITSFLTNVLVVSNPTIWYIRNFGDTSSYDGRGELFGPCQIQSIRFDKSPDGHFGGLAIAPNLPSTFVLEITFREIITLNRGSLYAEGF</Hsp_hseq> + <Hsp_midline>+KV+ELD G KTSAGQS ++A+ ++TI AQYP+ER++GND+S +RV+DLYKNGLLFTAY+ +SRT+ ++RS R L +K+ +N VKS+T G+ D V NILLPRSKSDVESVSH+FNDVG+SLI++GGG+ATG+LSN+ASTAVFG LES+T G+MADH EQIY TARSMY G DNRTKV+TW++TPRS QDLI I++IYE FNYYSYGETG S++A E+K ++D WYKSTF + K + E+ITSFL+NV+VVSNPT+W++RNFG TS +DGR E+FGPCQIQSIRFDK+P+G+F GLAIAPNLPSTF LEIT REI+TLNR S+YAEGF</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>17</Hit_num> + <Hit_id>gi|422934215|ref|YP_007004251.1|</Hit_id> + <Hit_def>baseplate tail tube cap [Enterobacteria phage Bp7] >gi|345450724|gb|AEN93927.1| baseplate tail tube cap [Enterobacteria phage Bp7]</Hit_def> + <Hit_accession>YP_007004251</Hit_accession> + <Hit_len>362</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>458.759</Hsp_bit-score> + <Hsp_score>1179</Hsp_score> + <Hsp_evalue>1.18966e-157</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>362</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>233</Hsp_identity> + <Hsp_positive>284</Hsp_positive> + <Hsp_gaps>23</Hsp_gaps> + <Hsp_align-len>367</Hsp_align-len> + <Hsp_qseq>IKVRELD-DKTDALISGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEM---------KRTANS----VVKSITGTNTN--KVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKND--TVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>MKVKELDFDVASLFKGGSKTSAGQSKTPA-IKTTVTAQYPAERASGNDTSTDMVLNDLYKNGLLFTAYNFSSRVSPDLRNDRSSQMTKKFSSAASKLTGNSGTYSAVKNLFGGNTKGVKFDTQALANILLPRSKSDVDSVSHKFNDVGESLITKGGGTATGILSNVASTAVFGALESVTNGVMADSGEQIYTTARSMYAGPDNRTKVFTWEMTPRNAQDLIQIIKIYEIFNYYSYGETGNSAFAGELKEKIDTWYRSTF----KKEAIDKFDGKLLGESITSFLSNVIVVSNPTIWYIRNFGDSSSYDGREDIFGPCQIQSIRFDKTPDGHFNGLAIAPNLPSTFSLEVTFREIITLNRGSLYTEGF</Hsp_hseq> + <Hsp_midline>+KV+ELD D G KTSAGQS A IK+T+TAQYP+ER++GNDTS + ++DLYKNGLLFTAY+ +SR + D+R+ R +M K T NS VK++ G NT K D + NILLPRSKSDV+SVSHKFNDVG+SLI++GGGTATG+LSNVASTAVFG LES+T G+MAD EQIY TARSMY G DNRTKVFTW++TPR+ QDLI II+IYE FNYYSYGETG S +A E+K ++D WY+STF + +K D + E ITSFLSNVIVVSNPT+W++RNFG +S +DGR ++FGPCQIQSIRFDKTP+G+FNGLAIAPNLPSTF+LE+T REI+TLNR S+Y EGF</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>18</Hit_num> + <Hit_id>gi|299779141|ref|YP_003734335.1|</Hit_id> + <Hit_def>48 gene product [Enterobacteria phage IME08] >gi|298105870|gb|ADI55514.1| gp48 baseplate tail tube cap [Enterobacteria phage IME08]</Hit_def> + <Hit_accession>YP_003734335</Hit_accession> + <Hit_len>363</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>451.825</Hsp_bit-score> + <Hsp_score>1161</Hsp_score> + <Hsp_evalue>7.00414e-155</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>2</Hsp_hit-from> + <Hsp_hit-to>363</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>228</Hsp_identity> + <Hsp_positive>283</Hsp_positive> + <Hsp_gaps>23</Hsp_gaps> + <Hsp_align-len>367</Hsp_align-len> + <Hsp_qseq>IKVRELD-DKTDALISGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEM---------KRTAN----SVVKSITGTNTN--KVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKND--TVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>MKVKELDFDVASLFKGGSKTSAGQS-KAKPIQTTVTAQYPAERASGNDTSTDMVLSDLYKNGLLFTAYNFSSRVSPDLRNDRSSQMTKKFSKATGKLTGNTGGFSAVKNLFSNNSKGVKFDNQALANILLPRSKSDVDSVTHKFNDVGESLITKGGGTATGILSNVASTAVFGALESVTNGVMADSGEQIYTTARSMYAGPDNRTKVFTWEMTPRNAQDLIQIIKIYEIFNYYSYGETGNSAFAGELKEKIDTWYRSTF----KKEAIDKFDGKLLGESITSFLSNVIVVSNPTIWYIRNFGDSSSYDGREDIFGPCQIQSIRFDKTPDGHFNGLAIAPNLPSTFSLEVTFREIITLNRGSLYTEGF</Hsp_hseq> + <Hsp_midline>+KV+ELD D G KTSAGQS ++ I++T+TAQYP+ER++GNDTS + + DLYKNGLLFTAY+ +SR + D+R+ R +M K T N S VK++ N+ K D + NILLPRSKSDV+SV+HKFNDVG+SLI++GGGTATG+LSNVASTAVFG LES+T G+MAD EQIY TARSMY G DNRTKVFTW++TPR+ QDLI II+IYE FNYYSYGETG S +A E+K ++D WY+STF + +K D + E ITSFLSNVIVVSNPT+W++RNFG +S +DGR ++FGPCQIQSIRFDKTP+G+FNGLAIAPNLPSTF+LE+T REI+TLNR S+Y EGF</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>19</Hit_num> + <Hit_id>gi|161622626|ref|YP_001595319.1|</Hit_id> + <Hit_def>gp48 baseplate tail tube cap [Enterobacteria phage JS98] >gi|238695346|ref|YP_002922539.1| gp48 baseplate tail tube cap [Enterobacteria phage JS10] >gi|52139949|gb|AAU29319.1| gp48 baseplate tail tube cap [Enterobacteria phage JS98] >gi|220029482|gb|ACL78416.1| gp48 baseplate tail tube cap [Enterobacteria phage JS10]</Hit_def> + <Hit_accession>YP_001595319</Hit_accession> + <Hit_len>362</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>450.669</Hsp_bit-score> + <Hsp_score>1158</Hsp_score> + <Hsp_evalue>1.82386e-154</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>351</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>362</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>226</Hsp_identity> + <Hsp_positive>282</Hsp_positive> + <Hsp_gaps>19</Hsp_gaps> + <Hsp_align-len>365</Hsp_align-len> + <Hsp_qseq>IKVRELD-DKTDALISGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEM---------KRTAN----SVVKSITGTNTN--KVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF</Hsp_qseq> + <Hsp_hseq>MKVKEIDIDVASLFKGGSKTSAGQS-KAKPAQTTVTAQYPAERASGNDTSTDMVLNDLYKNGLLFTAYNFSSRVSPDLRNDRSSQMTKKFSKAAGKLTSNTGGFSAVKNLFSNNSKGVKFDSQALANILLPRSKSDVDSVTHKFNDVGESLITKGGGTATGILSNVASTAVFGALESVTNGVMADSGEQIYTTARSMYAGPDNRTKVFTWEMTPRNAQDLIQIIKIYEIFNYYSYGETGNSAFAGELKEKIDTWYRSTFKKEAIDNFDGK--LLGEGITSFLSNVIVVSNPTIWYIRNFGNTSSYDGREDIFGPCQIQSIRFDKTPDGHFNGLAIAPNLPSTFSLEVTFREIITLNRGSLYTEGF</Hsp_hseq> + <Hsp_midline>+KV+E+D D G KTSAGQS ++ ++T+TAQYP+ER++GNDTS + ++DLYKNGLLFTAY+ +SR + D+R+ R +M K T+N S VK++ N+ K D + NILLPRSKSDV+SV+HKFNDVG+SLI++GGGTATG+LSNVASTAVFG LES+T G+MAD EQIY TARSMY G DNRTKVFTW++TPR+ QDLI II+IYE FNYYSYGETG S +A E+K ++D WY+STF + K + E ITSFLSNVIVVSNPT+W++RNFG TS +DGR ++FGPCQIQSIRFDKTP+G+FNGLAIAPNLPSTF+LE+T REI+TLNR S+Y EGF</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>20</Hit_num> + <Hit_id>gi|311992692|ref|YP_004009560.1|</Hit_id> + <Hit_def>gp48 baseplate tail tube cap [Acinetobacter phage Ac42] >gi|298684475|gb|ADI96436.1| gp48 baseplate tail tube cap [Acinetobacter phage Ac42]</Hit_def> + <Hit_accession>YP_004009560</Hit_accession> + <Hit_len>358</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>447.588</Hsp_bit-score> + <Hsp_score>1150</Hsp_score> + <Hsp_evalue>2.52876e-153</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>349</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>355</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>217</Hsp_identity> + <Hsp_positive>280</Hsp_positive> + <Hsp_gaps>14</Hsp_gaps> + <Hsp_align-len>358</Hsp_align-len> + <Hsp_qseq>IKVRELDDKTDALISGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMR---------LGEMKRTA-NSVVKSITGTNTNK-VDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAE</Hsp_qseq> + <Hsp_hseq>MKVKEIT-IANIVQAGTDVSAGYTNKRSEPK-TMIAQYPSERSSGNDAS-DMQISDLYRNGLLFTAYDYKSRTTPDMRGMRKREQNKVKALYEQTRTQFNRITSGITSESPKKSVSQDPVANILMPRSKSDSENINHKFNDVGDSLITKGGGTMTGAISNMASTAVFGAIESMTQGLLSDKGEQIYTTARSMYAGPENRTKVYSWELTPRTIDDLVQIIRIYEIFNFYSYGMTGNSQYAKELKSQIDEWYKKTFINNLTPEGSDRSGTMMESVTAFLSNVIVVTNPTVWFVRNFGKTTKFDGRPDVFGPAQIQSIRFDKAPDGNFRGLSIAPNMPSTFVLEVTMREILTLSRGTLYGD</Hsp_hseq> + <Hsp_midline>+KV+E+ + + +G SAG +++ ++ K T+ AQYPSERS+GND S +++ DLY+NGLLFTAYD SRTT DMR MR L E RT N + IT + K V + PV NIL+PRSKSD E+++HKFNDVGDSLI++GGGT TG +SN+ASTAVFG +ES+TQGL++D EQIY TARSMY G +NRTKV++W+LTPR++ DL+ II IYE FN+YSYG TG S YAKE+KSQ+DEWYK TF++ LTP+ ++++ T+ E +T+FLSNVIVV+NPTVWFVRNFG T+KFDGR +VFGP QIQSIRFDK P+GNF GL+IAPN+PSTF LE+TMREILTL+R ++Y +</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>21</Hit_num> + <Hit_id>gi|326536336|ref|YP_004300777.1|</Hit_id> + <Hit_def>gp48 baseplate tail tube cap [Acinetobacter phage 133] >gi|299483417|gb|ADJ19511.1| gp48 baseplate tail tube cap [Acinetobacter phage 133]</Hit_def> + <Hit_accession>YP_004300777</Hit_accession> + <Hit_len>356</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>438.343</Hsp_bit-score> + <Hsp_score>1126</Hsp_score> + <Hsp_evalue>1.19665e-149</Hsp_evalue> + <Hsp_query-from>17</Hsp_query-from> + <Hsp_query-to>349</Hsp_query-to> + <Hsp_hit-from>13</Hsp_hit-from> + <Hsp_hit-to>354</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>210</Hsp_identity> + <Hsp_positive>264</Hsp_positive> + <Hsp_gaps>13</Hsp_gaps> + <Hsp_align-len>344</Hsp_align-len> + <Hsp_qseq>SGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRT-----------ANSVVKSITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAE</Hsp_qseq> + <Hsp_hseq>AGTEISAGYTKQDT-TQQTFSAQYPAERSAGNDATKTSN-GDLYRNGLLFTAYDYKARATPDMTRQRQGELDKARSLYTRISSGLADAGKRSSTQGQDKKIVKDPVANILLPRSKSDSDVVSHKFNDVQDSLITRGGGTATGILSNIASTAVFGTIESVTQGWMADKGEQIFNASRSMYNGAENRSKVYTWELTPRTLEDLVEIMKIYEIFNYYSYGMTGTSAYAKELKAYIDDWYKKTFLNNLTPEGSDKSGTAMESVTSFLSNVITVSNPTIWFVRNFGKSTKFDGRPDVFGPAQIQSIRFDKAPEGHFKGLAIAPNMPSTFVLEITMREVIALSRGSIYGE</Hsp_hseq> + <Hsp_midline>+G + SAG + Q + T +AQYP+ERSAGND + + DLY+NGLLFTAYD +R T DM R GE+ + A++ +S T K+ K PV NILLPRSKSD + VSHKFNDV DSLI+RGGGTATG+LSN+ASTAVFG +ES+TQG MAD EQI+N +RSMY GA+NR+KV+TW+LTPR+++DL+ I++IYE FNYYSYG TGTS YAKE+K+ +D+WYK TFL+ LTP+ ++K+ T E +TSFLSNVI VSNPT+WFVRNFG ++KFDGR +VFGP QIQSIRFDK P G+F GLAIAPN+PSTF LEITMRE++ L+R S+Y E</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>22</Hit_num> + <Hit_id>gi|311992948|ref|YP_004009815.1|</Hit_id> + <Hit_def>gp48 baseplate [Acinetobacter phage Acj61] >gi|295815237|gb|ADG36163.1| gp48 baseplate [Acinetobacter phage Acj61]</Hit_def> + <Hit_accession>YP_004009815</Hit_accession> + <Hit_len>364</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>416.001</Hsp_bit-score> + <Hsp_score>1068</Hsp_score> + <Hsp_evalue>9.51542e-141</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>348</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>360</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>203</Hsp_identity> + <Hsp_positive>264</Hsp_positive> + <Hsp_gaps>14</Hsp_gaps> + <Hsp_align-len>358</Hsp_align-len> + <Hsp_qseq>VRELDDKTDALIS--GVKTSAGQSSQSAKIKSTI-TAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSV---------VKSITGTNTNKVDKI--PVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYA</Hsp_qseq> + <Hsp_hseq>VKEIVDSETNLIERIGSFVAAGRSSKEEESKTKIFEAQYPDGRAAATDSVDDARIQDLYANGLLFTAVEYKGRTTPEMTDMRGQVMKNMVDAIDQAKGVFNQLRGKSGGNKKISSAIKNPVCQILLPRSKTDTDTISHKFNDVNESLITRGNGTATGILSNLASTAVFGAVESISQGVMADHGEQIYNTSRAMYGGAENRTKTYTWELTPRTEGDLVQIIRIYELFSFFSYGVTGNSAYAKEIKGQIDDWYKKTFINNLTPEGADRSGTMMESVTSFLSNVIVVSNPTVWFIQNFGTMTTYDKHADVFGPAQISNIRFDKAPDGNFSGLAIAPNMPSTFVLEITFREILTLNRGSLYG</Hsp_hseq> + <Hsp_midline>V+E+ D LI G +AG+SS+ + K+ I AQYP R+A D+ R+ DLY NGLLFTA + RTT +M MR MK +++ ++ +G N I PV ILLPRSK+D +++SHKFNDV +SLI+RG GTATG+LSN+ASTAVFG +ES++QG+MADH EQIYNT+R+MYGGA+NRTK +TW+LTPR+ DL+ II IYE F+++SYG TG S YAKE+K Q+D+WYK TF++ LTP+ A+++ T+ E +TSFLSNVIVVSNPTVWF++NFGT + +D A+VFGP QI +IRFDK P+GNF+GLAIAPN+PSTF LEIT REILTLNR S+Y </Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>23</Hit_num> + <Hit_id>gi|311993474|ref|YP_004010339.1|</Hit_id> + <Hit_def>gp48 baseplate tail tube cap [Acinetobacter phage Acj9] >gi|295917431|gb|ADG60102.1| gp48 baseplate tail tube cap [Acinetobacter phage Acj9]</Hit_def> + <Hit_accession>YP_004010339</Hit_accession> + <Hit_len>360</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>412.92</Hsp_bit-score> + <Hsp_score>1060</Hsp_score> + <Hsp_evalue>1.46922e-139</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>349</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>357</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>212</Hsp_identity> + <Hsp_positive>267</Hsp_positive> + <Hsp_gaps>22</Hsp_gaps> + <Hsp_align-len>363</Hsp_align-len> + <Hsp_qseq>IKVRELDDKTDALIS--GVKTSAGQSSQSAKIKSTI-TAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMR-----LGEMKRTANSVVKSI---TGTNTNKVDKI--PVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEA---NKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAE</Hsp_qseq> + <Hsp_hseq>MQIEEITD----LVSKAGSDISAGQSMRSQESETKILTAQYPAERSASVANTADVGVGQSYSNGLLFTAFEYKSRTTNDLRSMRTKAQNAAKVLRSSKSVTKAIQAVTGGNPNDPNTIKNPVANILMPRSKTDTDVTGHKFNDVGESLISRGGGTATGILSNVASTAVFGTIESVTKGAMADHGEQIYNTSRSMYAGAENRVKTYTWELTPRTYDDLTQIVKIYEIFNYLSYGMTGKSAFAKGVKDEIDKWYRKTFINPL--NEATGSNVQSTTMESVTSFLSNVIVVSNPTVWTIQNFGTASKFDGLADVFGPAQISNIRFDKAPDGQFNGLAAAPNMPSSFVLEVTFREILTLNRATIYGE</Hsp_hseq> + <Hsp_midline>+++ E+ D L+S G SAGQS +S + ++ I TAQYP+ERSA + + V Y NGLLFTA++ SRTT D+RSMR ++ R++ SV K+I TG N N + I PV NIL+PRSK+D + HKFNDVG+SLISRGGGTATG+LSNVASTAVFG +ES+T+G MADH EQIYNT+RSMY GA+NR K +TW+LTPR+ DL I++IYE FNY SYG TG S +AK VK ++D+WY+ TF++ L +EA N T E +TSFLSNVIVVSNPTVW ++NFGT SKFDG A+VFGP QI +IRFDK P+G FNGLA APN+PS+F LE+T REILTLNRA++Y E</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>24</Hit_num> + <Hit_id>gi|639438515|ref|YP_009030255.1|</Hit_id> + <Hit_def>baseplate subunit [Serratia phage PS2] >gi|625370588|gb|AHY25448.1| baseplate subunit [Serratia phage PS2]</Hit_def> + <Hit_accession>YP_009030255</Hit_accession> + <Hit_len>358</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>411.379</Hsp_bit-score> + <Hsp_score>1056</Hsp_score> + <Hsp_evalue>4.21058e-139</Hsp_evalue> + <Hsp_query-from>18</Hsp_query-from> + <Hsp_query-to>350</Hsp_query-to> + <Hsp_hit-from>20</Hsp_hit-from> + <Hsp_hit-to>357</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>201</Hsp_identity> + <Hsp_positive>252</Hsp_positive> + <Hsp_gaps>7</Hsp_gaps> + <Hsp_align-len>339</Hsp_align-len> + <Hsp_qseq>GVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRTA----NSVVKSITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANK--NDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEG</Hsp_qseq> + <Hsp_hseq>GETIGAGSTGQKKLIQKTLQAQFPAERSAGTDGSSDLRVNDLYRNGLLFTAYDFDARTTQALRDFRKKNNTKTVLDQWNPIKFLTNYGSTFQLNQEAVANILMPRSQSDVDNISHKFNDVGESLTGRNGGDVGKTISNMASTAVFGALESVTQGIMADKGEQVYNSARSMYAGPDNRTKIFVWNLTPRTVYDLLEILKIYEIFAYYSYGRVGYSPWAKDLKSQIDAWYKET-LTKATFDQAKGEVKDTFFEGITDFLTNVITVSNPTIWTVKNFGRTSSFDGKTDIFGPCQIQSIRFDKSPNGHFNGLAIAPNLPSTFVLEITMREIMTLNRDVLFAEG</Hsp_hseq> + <Hsp_midline>G AG + Q I+ T+ AQ+P+ERSAG D S LRV+DLY+NGLLFTAYD ++RTT +R R +T N + +T ++++ V NIL+PRS+SDV+++SHKFNDVG+SL R GG +SN+ASTAVFG LES+TQG+MAD EQ+YN+ARSMY G DNRTK+F W+LTPR+V DL+ I++IYE F YYSYG G S +AK++KSQ+D WYK T L T D+A DT FE IT FL+NVI VSNPT+W V+NFG TS FDG+ ++FGPCQIQSIRFDK+PNG+FNGLAIAPNLPSTF LEITMREI+TLNR ++AEG</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>25</Hit_num> + <Hit_id>gi|33620542|ref|NP_891751.1|</Hit_id> + <Hit_def>gp48 baseplate tail tube cap [Enterobacteria phage RB49] >gi|33348009|gb|AAQ15410.1| gp48 baseplate tail tube cap [Enterobacteria phage RB49]</Hit_def> + <Hit_accession>NP_891751</Hit_accession> + <Hit_len>352</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>408.683</Hsp_bit-score> + <Hsp_score>1049</Hsp_score> + <Hsp_evalue>4.9384e-138</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>348</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>349</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>200</Hsp_identity> + <Hsp_positive>260</Hsp_positive> + <Hsp_gaps>13</Hsp_gaps> + <Hsp_align-len>354</Hsp_align-len> + <Hsp_qseq>IKVRELDDKTDALISGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSVVKSIT--------GTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYA</Hsp_qseq> + <Hsp_hseq>MKISVINDAVDSFKAGVKTSAGFTSKNKG--KTLTAQFPAERASGNDASG-YYINDLYNNGLLFTAYDYTSRTTGSLRDFR--KKKNVASGFGGSVNIAGFDLNLGGRNAAFDREAIANILLPRSQSDVDAASHKFNDVGESVISRGGGTLGGALSNMASTAVFGGIESITGGYLADHGEQIYNTARSMYAGADARTKNYVWHLTPRSIEDLRNILIIYETFLELSYGSSGISSTAKELKAEVDAWYKNTLLRKSTPEEAKRNDTLFEGITDFLSNVITVSNPTIWMISNFGKRTSFEGRSDAFGPAQISSVRLDKSPDGKFNGLAISPNLPSTFVLEVTFREILTLSRGTIFG</Hsp_hseq> + <Hsp_midline>+K+ ++D D+ +GVKTSAG +S++ T+TAQ+P+ER++GND SG ++DLY NGLLFTAYD SRTTG +R R + K A+ S+ G D+ + NILLPRS+SDV++ SHKFNDVG+S+ISRGGGT G LSN+ASTAVFGG+ES+T G +ADH EQIYNTARSMY GAD RTK + W LTPRS++DL I+ IYE F SYG +G S+ AKE+K+++D WYK+T L TP+EA +NDT+FE IT FLSNVI VSNPT+W + NFG + F+GR++ FGP QI S+R DK+P+G FNGLAI+PNLPSTF LE+T REILTL+R +++ </Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>26</Hit_num> + <Hit_id>gi|238695065|ref|YP_002922259.1|</Hit_id> + <Hit_def>gp48 baseplate tail tube cap [Enterobacteria phage JSE] >gi|220029201|gb|ACL78136.1| gp48 baseplate tail tube cap [Enterobacteria phage JSE]</Hit_def> + <Hit_accession>YP_002922259</Hit_accession> + <Hit_len>352</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>406.757</Hsp_bit-score> + <Hsp_score>1044</Hsp_score> + <Hsp_evalue>2.44502e-137</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>348</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>349</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>199</Hsp_identity> + <Hsp_positive>259</Hsp_positive> + <Hsp_gaps>13</Hsp_gaps> + <Hsp_align-len>354</Hsp_align-len> + <Hsp_qseq>IKVRELDDKTDALISGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSVVKSIT--------GTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYA</Hsp_qseq> + <Hsp_hseq>MKISVINDAVDSFKAGVKTSAGFTSKNKG--KTLTAQFPAERASGNDASG-YYINDLYNNGLLFTAYDYTSRTTGSLRDFR--KKKNVASGFGGSVNIAGFDLNLGGRNAAFDREAIANILLPRSQSDVDAASHKFNDVGESVISRGGGTLGGALSNMASTAVFGGIESITGGYLADHGEQIYNTARSMYAGADARTKNYVWHLTPRSIEDLRNILIIYETFLELSYGSSGISSTAKELKAEVDAWYKNTLLSKSTPAEAKRNDTLFEGITDFLSNVITVSNPTIWMISNFGKRTSFEGRSDAFGPAQISSVRLDKSPDGKFNGLAISPNLPSTFVLEVSFREILTLSRGTIFG</Hsp_hseq> + <Hsp_midline>+K+ ++D D+ +GVKTSAG +S++ T+TAQ+P+ER++GND SG ++DLY NGLLFTAYD SRTTG +R R + K A+ S+ G D+ + NILLPRS+SDV++ SHKFNDVG+S+ISRGGGT G LSN+ASTAVFGG+ES+T G +ADH EQIYNTARSMY GAD RTK + W LTPRS++DL I+ IYE F SYG +G S+ AKE+K+++D WYK+T L TP EA +NDT+FE IT FLSNVI VSNPT+W + NFG + F+GR++ FGP QI S+R DK+P+G FNGLAI+PNLPSTF LE++ REILTL+R +++ </Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>27</Hit_num> + <Hit_id>gi|157311484|ref|YP_001469527.1|</Hit_id> + <Hit_def>gp48 baseplate tail tube cap [Enterobacteria phage Phi1] >gi|149380688|gb|ABR24693.1| gp48 baseplate tail tube cap [Enterobacteria phage Phi1]</Hit_def> + <Hit_accession>YP_001469527</Hit_accession> + <Hit_len>352</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>405.601</Hsp_bit-score> + <Hsp_score>1041</Hsp_score> + <Hsp_evalue>6.50999e-137</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>348</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>349</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>198</Hsp_identity> + <Hsp_positive>259</Hsp_positive> + <Hsp_gaps>13</Hsp_gaps> + <Hsp_align-len>354</Hsp_align-len> + <Hsp_qseq>IKVRELDDKTDALISGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSVVKSIT--------GTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYA</Hsp_qseq> + <Hsp_hseq>MKISVINDAVDSFKAGVKTSAGFTSKNKG--KTLTAQFPAERASGNDASG-YYINDLYNNGLLFTAYDYTSRTTGSLRDFR--KKKNVASGFGGSVNIAGFDLNLGGRNAAFDREAIANILLPRSQSDVDAASHKFNDVGESVISRGGGTLGGALSNMASTAVFGGIESITGGYLADHGEQIYNTARSMYAGADARTKNYVWHLTPRSIEDLRNILIIYETFLELSYGSSGISSTAKELKAEVDAWYKNTLLRKSTPEEAKRNDTLFEGITDFLSNAITVSNPTIWMISNFGKRTSFEGRSDAFGPAQISSVRLDKSPDGKFNGLAISPNLPSTFVLEVSFREILTLSRGTIFG</Hsp_hseq> + <Hsp_midline>+K+ ++D D+ +GVKTSAG +S++ T+TAQ+P+ER++GND SG ++DLY NGLLFTAYD SRTTG +R R + K A+ S+ G D+ + NILLPRS+SDV++ SHKFNDVG+S+ISRGGGT G LSN+ASTAVFGG+ES+T G +ADH EQIYNTARSMY GAD RTK + W LTPRS++DL I+ IYE F SYG +G S+ AKE+K+++D WYK+T L TP+EA +NDT+FE IT FLSN I VSNPT+W + NFG + F+GR++ FGP QI S+R DK+P+G FNGLAI+PNLPSTF LE++ REILTL+R +++ </Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>28</Hit_num> + <Hit_id>gi|401824981|gb|AFQ22671.1|</Hit_id> + <Hit_def>baseplate tail tube cap [Stenotrophomonas phage IME13]</Hit_def> + <Hit_accession>AFQ22671</Hit_accession> + <Hit_len>342</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>368.237</Hsp_bit-score> + <Hsp_score>944</Hsp_score> + <Hsp_evalue>2.03823e-122</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>349</Hsp_query-to> + <Hsp_hit-from>7</Hsp_hit-from> + <Hsp_hit-to>341</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>181</Hsp_identity> + <Hsp_positive>241</Hsp_positive> + <Hsp_gaps>13</Hsp_gaps> + <Hsp_align-len>345</Hsp_align-len> + <Hsp_qseq>LDDKTDALISGV---KTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSVVKSITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAE</Hsp_qseq> + <Hsp_hseq>LDGGVQDVVGGILKGENPATGSSPRRPISKIAIAQFPAERNSANDSAQDFNVNDLYKNGLILSAFNYAGRQTGDLRSFRSGQ-----NNI-----GDYRKGVVKEAIANILMPRGQTDVDTISHKFNDVQQSLVERGDSSVTGALSSMASHALFGGLESITQGAFADRGEQVYITSRAMYAGADNRTKTYTWQLTPRNVYDLMQILIIYEMLSYYSYGAVEKSKTASQIKSTLDKAYKETFINPLTPEATHGQTTMFERITSFLSNVNVVSNPIIWTIRNFGETSSFDMRSDVFGPAQIQSIRFDKSPDGHFGGLAIAPNLPSSFVLEVTFREILALNRSDLYDE</Hsp_hseq> + <Hsp_midline>LD ++ G+ + A SS I AQ+P+ER++ ND++ V+DLYKNGL+ +A++ R TGD+RS R G+ N++ G V K + NIL+PR ++DV+++SHKFNDV SL+ RG + TG LS++AS A+FGGLES+TQG AD EQ+Y T+R+MY GADNRTK +TW LTPR+V DL+ I+ IYE +YYSYG S A ++KS LD+ YK TF++ LTP+ + T+FE+ITSFLSNV VVSNP +W +RNFG TS FD R++VFGP QIQSIRFDK+P+G+F GLAIAPNLPS+F LE+T REIL LNR+ +Y E</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>29</Hit_num> + <Hit_id>gi|472438117|ref|YP_007677897.1|</Hit_id> + <Hit_def>baseplate tail tube cap [Aeromonas phage Aes012] >gi|395653255|gb|AFN69810.1| baseplate tail tube cap [Aeromonas phage Aes012]</Hit_def> + <Hit_accession>YP_007677897</Hit_accession> + <Hit_len>342</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>364.385</Hsp_bit-score> + <Hsp_score>934</Hsp_score> + <Hsp_evalue>7.92274e-121</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>349</Hsp_query-to> + <Hsp_hit-from>7</Hsp_hit-from> + <Hsp_hit-to>341</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>178</Hsp_identity> + <Hsp_positive>240</Hsp_positive> + <Hsp_gaps>13</Hsp_gaps> + <Hsp_align-len>345</Hsp_align-len> + <Hsp_qseq>LDDKTDALISGV---KTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSVVKSITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAE</Hsp_qseq> + <Hsp_hseq>LDGGVQDVVGGILKGENPATGSSPRRPISKIAIAQFPAERNSANDSAQDFNVNDLYKNGLILSAFNYAGRQTGDLRSFRSGQ-----NNI-----GDYRKGVVKEAIANILMPRGQTDVDTISHKFNDVQQSLVERGDSSVTGALSSMASHALYGGLESITQGAFADRGEQVYIASRAMYAGADNRTKTYTWQLTPRNVYDLMQILIIYEMLSYYSYGAVEKSKTASQIKSTLDKAYKETFINPLTPEATHGQTTMFERITSFLSNVNVVSNPIIWTIRNFGETSSFDMRSDMFGPAQIQSIRFDKSPDGHFGGLAIAPNLPSSFVLEVTFREILALNRSDLYDE</Hsp_hseq> + <Hsp_midline>LD ++ G+ + A SS I AQ+P+ER++ ND++ V+DLYKNGL+ +A++ R TGD+RS R G+ N++ G V K + NIL+PR ++DV+++SHKFNDV SL+ RG + TG LS++AS A++GGLES+TQG AD EQ+Y +R+MY GADNRTK +TW LTPR+V DL+ I+ IYE +YYSYG S A ++KS LD+ YK TF++ LTP+ + T+FE+ITSFLSNV VVSNP +W +RNFG TS FD R+++FGP QIQSIRFDK+P+G+F GLAIAPNLPS+F LE+T REIL LNR+ +Y E</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>30</Hit_num> + <Hit_id>gi|310722276|ref|YP_003969100.1|</Hit_id> + <Hit_def>unnamed protein product [Aeromonas phage phiAS4] >gi|306021119|gb|ADM79654.1| baseplate protein [Aeromonas phage phiAS4]</Hit_def> + <Hit_accession>YP_003969100</Hit_accession> + <Hit_len>342</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>363.999</Hsp_bit-score> + <Hsp_score>933</Hsp_score> + <Hsp_evalue>1.00609e-120</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>349</Hsp_query-to> + <Hsp_hit-from>11</Hsp_hit-from> + <Hsp_hit-to>341</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>177</Hsp_identity> + <Hsp_positive>239</Hsp_positive> + <Hsp_gaps>11</Hsp_gaps> + <Hsp_align-len>342</Hsp_align-len> + <Hsp_qseq>LDDKTDALISGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSVVKSITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAE</Hsp_qseq> + <Hsp_hseq>VQDVVGGILKGENPATG-SSPRRPISKIAIAQFPAERNSANDSAQDFNVNDLYKNGLILSAFNYAGRQTGDLRSFRSGQ-----NNI-----GDYRKGVVKEAIANILMPRGQTDVDTISHKFNDVQQSLVERGDSSVTGALSSMASHALYGGLESITQGAFADRGEQVYIASRAMYAGAENRTKTYTWQLTPRNVYDLMQILIIYEMLSYYSYGAVEKSKTASQIKSTLDKAYKETFINPLTPEATHGQTTMFERITSFLSNVNVVSNPIIWTIRNFGETSSFDMRSDVFGPAQIQSIRFDKSPDGHFGGLAIAPNLPSSFVLEVTFREILALNRSDLYDE</Hsp_hseq> + <Hsp_midline>+ D ++ G + G SS I AQ+P+ER++ ND++ V+DLYKNGL+ +A++ R TGD+RS R G+ N++ G V K + NIL+PR ++DV+++SHKFNDV SL+ RG + TG LS++AS A++GGLES+TQG AD EQ+Y +R+MY GA+NRTK +TW LTPR+V DL+ I+ IYE +YYSYG S A ++KS LD+ YK TF++ LTP+ + T+FE+ITSFLSNV VVSNP +W +RNFG TS FD R++VFGP QIQSIRFDK+P+G+F GLAIAPNLPS+F LE+T REIL LNR+ +Y E</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>31</Hit_num> + <Hit_id>gi|109290161|ref|YP_656410.1|</Hit_id> + <Hit_def>gp48 base plate protein [Aeromonas phage 25] >gi|423262259|ref|YP_007010858.1| baseplate tail tube cap [Aeromonas phage Aes508] >gi|104345834|gb|ABF72734.1| gp48 base plate protein [Aeromonas phage 25] >gi|402762137|gb|AFQ97251.1| baseplate tail tube cap [Aeromonas phage Aes508]</Hit_def> + <Hit_accession>YP_656410</Hit_accession> + <Hit_len>342</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>362.459</Hsp_bit-score> + <Hsp_score>929</Hsp_score> + <Hsp_evalue>3.78445e-120</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>349</Hsp_query-to> + <Hsp_hit-from>11</Hsp_hit-from> + <Hsp_hit-to>341</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>176</Hsp_identity> + <Hsp_positive>238</Hsp_positive> + <Hsp_gaps>11</Hsp_gaps> + <Hsp_align-len>342</Hsp_align-len> + <Hsp_qseq>LDDKTDALISGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSVVKSITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAE</Hsp_qseq> + <Hsp_hseq>IQDVVGGILKGENPATG-SSPRRPISKIAIAQFPAERNSANDSAQDFNVNDLYKNGLILSAFNYAGRQTGDLRSFRSGQ-----NNI-----GDYRKGVVKEAIANILMPRGQTDVDTISHKFNDVQQSLVERGDSSVTGALSSMASHALYGGLESITQGAFADRGEQVYIASRAMYAGAENRTKTYTWQLTPRNVYDLMQILTIYEMLSYYSYGAVEKSKTASQIKSTLDNAYKETFINPLTPEATHGQTTMFERITSFLSNVNVVSNPIIWTIRNFGETSSFDMRSDMFGPAQIQSIRFDKSPDGHFGGLAIAPNLPSSFVLEVTFREILALNRSDLYDE</Hsp_hseq> + <Hsp_midline>+ D ++ G + G SS I AQ+P+ER++ ND++ V+DLYKNGL+ +A++ R TGD+RS R G+ N++ G V K + NIL+PR ++DV+++SHKFNDV SL+ RG + TG LS++AS A++GGLES+TQG AD EQ+Y +R+MY GA+NRTK +TW LTPR+V DL+ I+ IYE +YYSYG S A ++KS LD YK TF++ LTP+ + T+FE+ITSFLSNV VVSNP +W +RNFG TS FD R+++FGP QIQSIRFDK+P+G+F GLAIAPNLPS+F LE+T REIL LNR+ +Y E</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>32</Hit_num> + <Hit_id>gi|37651665|ref|NP_932539.1|</Hit_id> + <Hit_def>baseplate subunit [Aeromonas phage 44RR2.8t] >gi|66391986|ref|YP_238911.1| baseplate tail tube cap [Aeromonas phage 31] >gi|34732965|gb|AAQ81502.1| baseplate tail tube cap [Aeromonas phage 44RR2.8t] >gi|62114823|gb|AAX63671.1| gp48 [Aeromonas phage 31]</Hit_def> + <Hit_accession>NP_932539</Hit_accession> + <Hit_len>342</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>362.073</Hsp_bit-score> + <Hsp_score>928</Hsp_score> + <Hsp_evalue>5.01898e-120</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>349</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>341</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>174</Hsp_identity> + <Hsp_positive>245</Hsp_positive> + <Hsp_gaps>14</Hsp_gaps> + <Hsp_align-len>351</Hsp_align-len> + <Hsp_qseq>IKVREL-DDKTDALISGV---KTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSVVKSITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAE</Hsp_qseq> + <Hsp_hseq>MKVTELIDGGVQDVVKGILKGENPAGGSTPRQPLSKITIAQFPAERNAANDSTQDFNVNDLYKNGLLLSAFNYSGRQTGDLRSFRTDQ-----NNI-----GDYRKGVVKEAIANILMPKGQTDIDTINHKFNDVQQSLVERGNGSITGALSSMASHAVYGGLESITQGAFADRGEQVYIASRAMYAGAENRTKTYTWQLTPRNVYDLVEIIKIYEMLSYYSYGSVEKSNTANDIRKSVDAAYKETIINPLTPEATHGQTTMFERITSFLSNVNVVSNPIIWTIRNFGQSSSFDSRSDIFGPAQIQSIRFDKSPDGHFGGLAVAPNLPSSFVLEVTFREILALNRSDLYSE</Hsp_hseq> + <Hsp_midline>+KV EL D ++ G+ + AG S+ + AQ+P+ER+A ND++ V+DLYKNGLL +A++ + R TGD+RS R + N++ G V K + NIL+P+ ++D+++++HKFNDV SL+ RG G+ TG LS++AS AV+GGLES+TQG AD EQ+Y +R+MY GA+NRTK +TW LTPR+V DL+ II+IYE +YYSYG S A +++ +D YK T ++ LTP+ + T+FE+ITSFLSNV VVSNP +W +RNFG +S FD R+++FGP QIQSIRFDK+P+G+F GLA+APNLPS+F LE+T REIL LNR+ +Y+E</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>33</Hit_num> + <Hit_id>gi|582955110|gb|AHI44678.1|</Hit_id> + <Hit_def>baseplate tail tube cap [Acinetobacter phage ZZ1]</Hit_def> + <Hit_accession>AHI44678</Hit_accession> + <Hit_len>216</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>302.753</Hsp_bit-score> + <Hsp_score>774</Hsp_score> + <Hsp_evalue>1.69313e-98</Hsp_evalue> + <Hsp_query-from>138</Hsp_query-from> + <Hsp_query-to>349</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>213</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>139</Hsp_identity> + <Hsp_positive>171</Hsp_positive> + <Hsp_gaps>1</Hsp_gaps> + <Hsp_align-len>213</Hsp_align-len> + <Hsp_qseq>ISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEA-NKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAE</Hsp_qseq> + <Hsp_hseq>MTRGNGSPTGILSNMASTAVFGAIESATQGAMADHGEQIYNTSRSMYAGAENRTKTYSWDLTPRTPEDLSQILKIYEIFNYLSYGMTGNSAFAKSIKDEIDNWYKKTFIKPINDATGTTTQSTVMESVTSFLSNVIVVSNPTVWFIQNFGTQSKYDGLADIFGPAQISNIRFEKTSDGNFNGLAIAPNMPSTFVLEVTFREILTLNRASLYGE</Hsp_hseq> + <Hsp_midline>++RG G+ TG+LSN+ASTAVFG +ES TQG MADH EQIYNT+RSMY GA+NRTK ++WDLTPR+ +DL I++IYE FNY SYG TG S +AK +K ++D WYK TF+ + TV E +TSFLSNVIVVSNPTVWF++NFGT SK+DG A++FGP QI +IRF+KT +GNFNGLAIAPN+PSTF LE+T REILTLNRAS+Y E</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>34</Hit_num> + <Hit_id>gi|392973134|ref|YP_006489092.1|</Hit_id> + <Hit_def>putative split baseplate tail tube cap [Acinetobacter phage ZZ1]</Hit_def> + <Hit_accession>YP_006489092</Hit_accession> + <Hit_len>202</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>284.263</Hsp_bit-score> + <Hsp_score>726</Hsp_score> + <Hsp_evalue>1.55814e-91</Hsp_evalue> + <Hsp_query-from>152</Hsp_query-from> + <Hsp_query-to>349</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>199</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>131</Hsp_identity> + <Hsp_positive>159</Hsp_positive> + <Hsp_gaps>1</Hsp_gaps> + <Hsp_align-len>199</Hsp_align-len> + <Hsp_qseq>VASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANK-NDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAE</Hsp_qseq> + <Hsp_hseq>MASTAVFGAIESATQGAMADHGEQIYNTSRSMYAGAENRTKTYSWDLTPRTPEDLSQILKIYEIFNYLSYGMTGNSAFAKSIKDEIDNWYKKTFIKPINDATGTTTQSTVMESVTSFLSNVIVVSNPTVWFIQNFGTQSKYDGLADIFGPAQISNIRFEKTSDGNFNGLAIAPNMPSTFVLEVTFREILTLNRASLYGE</Hsp_hseq> + <Hsp_midline>+ASTAVFG +ES TQG MADH EQIYNT+RSMY GA+NRTK ++WDLTPR+ +DL I++IYE FNY SYG TG S +AK +K ++D WYK TF+ + TV E +TSFLSNVIVVSNPTVWF++NFGT SK+DG A++FGP QI +IRF+KT +GNFNGLAIAPN+PSTF LE+T REILTLNRAS+Y E</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>35</Hit_num> + <Hit_id>gi|294661512|ref|YP_003579965.1|</Hit_id> + <Hit_def>gp48 baseplate subunit [Klebsiella phage KP15] >gi|448260646|ref|YP_007348740.1| baseplate tail tube cap [Klebsiella phage KP27] >gi|292660673|gb|ADE34921.1| gp48 baseplate subunit [Klebsiella phage KP15] >gi|370343455|gb|AEX26584.1| baseplate tail tube cap [Klebsiella phage KP27]</Hit_def> + <Hit_accession>YP_003579965</Hit_accession> + <Hit_len>357</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>170.244</Hsp_bit-score> + <Hsp_score>430</Hsp_score> + <Hsp_evalue>1.23976e-45</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>347</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>353</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>111</Hsp_identity> + <Hsp_positive>191</Hsp_positive> + <Hsp_gaps>32</Hsp_gaps> + <Hsp_align-len>365</Hsp_align-len> + <Hsp_qseq>IKVRELDDKTDALIS----GVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGD-MRSMRLGEMKRTANSVVKSITGT-------NTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYK---STFLDTLTPDE-----ANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVY</Hsp_qseq> + <Hsp_hseq>MKFSIIDDSINTLKNIKNRGIPSGGAAITESVLKQTIVTAEFPAQRAAGIDNA--YNASSLYNNGLLFTAYDFNGVGSKDNYRSLR--QAAQNPKQILSSATGNVKYKQVLNSSIGTMEPVCQILLPRSLNDNEVNSHRYQDANDSFLTKG-------LSRVVSNMVWGAVESISGGIMADRREALDVGTKAAFQGSDKRTKMYYNTFVIESRNDLLELIKIYYLFTVLGYGTTSGGT-AKEVAALVKQYYGVLGAKTANAISPSSNPVTASDFDNSLGNDVVDFISNVEVIKSPPVWFIRDFQSGDSLRLPHSTFGPAGITSVRFGRSIDNIVNTLRESPNTPISLEVEIQFMELIDMRQDSIF</Hsp_hseq> + <Hsp_midline>+K +DD + L + G+ + ++S ++ +TA++P++R+AG D + LY NGLLFTAYD N + D RS+R + + ++ S TG N++ PV ILLPRS +D E SH++ D DS +++G LS V S V+G +ES++ G+MAD E + ++ + G+D RTK++ S DL+ +I+IY F YG T T AKEV + + ++Y + + ++P ++ ++++ + F+SNV V+ +P VWF+R+F + FGP I S+RF ++ + N L +PN P + +EI E++ + + S++</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>36</Hit_num> + <Hit_id>gi|66391556|ref|YP_239081.1|</Hit_id> + <Hit_def>gp48 baseplate [Enterobacteria phage RB43] >gi|62288644|gb|AAX78627.1| gp48 baseplate [Enterobacteria phage RB43] >gi|406718846|emb|CCL97571.1| protein of unknown function [Enterobacteria phage RB43] >gi|415434114|emb|CCK73954.1| protein of unknown function [Enterobacteria phage RB43]</Hit_def> + <Hit_accession>YP_239081</Hit_accession> + <Hit_len>361</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>168.703</Hsp_bit-score> + <Hsp_score>426</Hsp_score> + <Hsp_evalue>6.23176e-45</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>347</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>357</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>111</Hsp_identity> + <Hsp_positive>191</Hsp_positive> + <Hsp_gaps>36</Hsp_gaps> + <Hsp_align-len>369</Hsp_align-len> + <Hsp_qseq>IKVRELDDKTDALI----SGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYD----MNSRTTGDMRSMRLGEMKRTANSVVKSITGT-------NTNKVDKI-PVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKST---FLDTLTPDE-----ANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVY</Hsp_qseq> + <Hsp_hseq>MKIKVLQDTVQSFAEIKNAGIPSGGATTTKNALSQPIVTAEFPSQRAAGIDNA--YNASSLYNNGLLFTAYDFTGGLAPGSKDNYRSLR--QAAQNAKQILSANTGNVRYKQVLNTRTMGTLNPICQILLPRSLNDNEVNSHRYQDATDSIVAKG-------LSRAVSNVIWGAVESVSGGILADRREAIDIGTKAAFQGSDKRTKMYYNTFVIESRYDLLELIKIYYLFTVLGYGTTSGGTPA-ELAGLVKTAYNNTASKVANVFAPSSNQTTASDFNDSIGDQIVDFVSNVEVIKSPPVWFIRDFQTGDSLRFPHSTFGPAGITSVRFGRTMDNIVNTLRESPNTPISVEIEIQFMELIDMRQDSIF</Hsp_hseq> + <Hsp_midline>+K++ L D + +G+ + ++++A + +TA++PS+R+AG D + LY NGLLFTAYD + + + RS+R + + A ++ + TG NT + + P+ ILLPRS +D E SH++ D DS++++G LS S ++G +ES++ G++AD E I ++ + G+D RTK++ S DL+ +I+IY F YG T T A E+ + Y +T + P ++ ND++ ++I F+SNV V+ +P VWF+R+F T FGP I S+RF +T + N L +PN P + +EI E++ + + S++</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>37</Hit_num> + <Hit_id>gi|509141759|ref|YP_008060624.1|</Hit_id> + <Hit_def>baseplate tail tube cap [Escherichia phage Lw1] >gi|479258586|gb|AGJ71509.1| baseplate tail tube cap [Escherichia phage Lw1]</Hit_def> + <Hit_accession>YP_008060624</Hit_accession> + <Hit_len>364</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>156.377</Hsp_bit-score> + <Hsp_score>394</Hsp_score> + <Hsp_evalue>2.35983e-40</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>347</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>360</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>106</Hsp_identity> + <Hsp_positive>187</Hsp_positive> + <Hsp_gaps>39</Hsp_gaps> + <Hsp_align-len>372</Hsp_align-len> + <Hsp_qseq>IKVRELDDKTDALI----SGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSR----TTGDMRSMRLGEMKRTANSVVKSITGT-------NTNKVDKI-PVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGET--GTSTYAKEVKSQLDEWYKSTFLDTL---------TPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVY</Hsp_qseq> + <Hsp_hseq>MKIKVLQDTVQSFAKIKNAGIPSGGATTTKNALTQPIVTAEFPSQRAAGIDNA--YNASSLYNNGLLFTAYEFTGGFAPGSKDNYRSLR--QAAQNAQQILSANTGNVRYKQVLNTRTMGTLNPICQILLPRSLNDNEVNSHRYQDATDSIVAKGP-------SRVVSNVIWGVIESASGGILADRREAVDVGTKAAFQGSDKRTKMYYNTFVIESRYDLLELIKIYYLFTVLGYGTTSGGTAAEIAELAKQTINKASTTGAKLINNAAAGNGPTPTVSN-GSIISDQMVDFVTNIEVIKSPPVWFIRDFQTGDSLRFPHSTFGPAGITSVRFGRTMDNIVNTLRESPNTPISVEIEIQFMELIDMRQDSIF</Hsp_hseq> + <Hsp_midline>+K++ L D + +G+ + ++++A + +TA++PS+R+AG D + LY NGLLFTAY+ + + RS+R + + A ++ + TG NT + + P+ ILLPRS +D E SH++ D DS++++G S V S ++G +ES + G++AD E + ++ + G+D RTK++ S DL+ +I+IY F YG T GT+ E+ Q +T + TP +N + +++ F++N+ V+ +P VWF+R+F T FGP I S+RF +T + N L +PN P + +EI E++ + + S++</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>38</Hit_num> + <Hit_id>gi|304373651|ref|YP_003858396.1|</Hit_id> + <Hit_def>gp48 baseplate tail tube cap [Enterobacteria phage RB16] >gi|299829607|gb|ADJ55400.1| gp48 baseplate tail tube cap [Enterobacteria phage RB16]</Hit_def> + <Hit_accession>YP_003858396</Hit_accession> + <Hit_len>364</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>155.221</Hsp_bit-score> + <Hsp_score>391</Hsp_score> + <Hsp_evalue>6.71724e-40</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>347</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>360</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>106</Hsp_identity> + <Hsp_positive>186</Hsp_positive> + <Hsp_gaps>39</Hsp_gaps> + <Hsp_align-len>372</Hsp_align-len> + <Hsp_qseq>IKVRELDDKTDALI----SGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSR----TTGDMRSMRLGEMKRTANSVVKSITGT-------NTNKVDKI-PVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGET--GTSTYAKEVKSQLDEWYKSTFLDTL---------TPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVY</Hsp_qseq> + <Hsp_hseq>MKIKVLQDTVQSFAEIKNAGIPSGGATTTKNALTQPIVTAEFPSQRAAGIDNA--YNASSLYNNGLLFTAYEFTGGFAPGSKDNYRSLR--QAAQNAQQILSANTGNVRYKQVLNTRTMGTLNPICQILLPRSLNDNEVNSHRYQDATDSIVAKGP-------SRVVSNVIWGVIESASGGILADRREAVDVGTKAAFQGSDKRTKMYYNTFVIESRYDLLELIKIYYLFTVLGYGTTSGGTAAEIAELAKQTINKSSTTGAKLINNAVAGNGPTPTVSN-GSIISDQMVDFVINIEVIKSPPVWFIRDFQTGDSLRFPHSTFGPAGITSVRFGRTMDNIVNTLRESPNTPISVEIEIQFMELIDMRQDSIF</Hsp_hseq> + <Hsp_midline>+K++ L D + +G+ + ++++A + +TA++PS+R+AG D + LY NGLLFTAY+ + + RS+R + + A ++ + TG NT + + P+ ILLPRS +D E SH++ D DS++++G S V S ++G +ES + G++AD E + ++ + G+D RTK++ S DL+ +I+IY F YG T GT+ E+ Q +T + TP +N + +++ F+ N+ V+ +P VWF+R+F T FGP I S+RF +T + N L +PN P + +EI E++ + + S++</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>39</Hit_num> + <Hit_id>gi|414086183|ref|YP_006986373.1|</Hit_id> + <Hit_def>baseplate tail tube cap [Cronobacter phage vB_CsaM_GAP161] >gi|378566508|gb|AFC22204.1| baseplate tail tube cap [Cronobacter phage vB_CsaM_GAP161]</Hit_def> + <Hit_accession>YP_006986373</Hit_accession> + <Hit_len>364</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>153.68</Hsp_bit-score> + <Hsp_score>387</Hsp_score> + <Hsp_evalue>2.64906e-39</Hsp_evalue> + <Hsp_query-from>17</Hsp_query-from> + <Hsp_query-to>347</Hsp_query-to> + <Hsp_hit-from>19</Hsp_hit-from> + <Hsp_hit-to>360</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>102</Hsp_identity> + <Hsp_positive>178</Hsp_positive> + <Hsp_gaps>43</Hsp_gaps> + <Hsp_align-len>358</Hsp_align-len> + <Hsp_qseq>SGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYD----MNSRTTGDMRSMRLGEMKRTANSVVKSITGT-------NTNKVDKI-PVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLT--------------PDEANKNDTVF-EKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVY</Hsp_qseq> + <Hsp_hseq>AGIPSGGAATTKNALTQPIVTAEFPSQRAAGIDNA--YNASSLYNNGLLFTAYEFTGGLAPGSKDNYRSLR--QAAQNAQQILSANTGNVRYKQVLNSRTIGTLNPICQILLPRSLNDNEVNSHRYQDATDSIVAKGP-------SRVVSNVIWGAIESASGGILADRREAVDVGTKAAFQGSDKRTKMYYNTFVIESRYDLLELIKIYYLFTVLGYGTTSGGTAA-----EIAELAKQTINKSSTAGAKLINNAIAGNGPTPTVSNGSIISDQAVDFVTNIEVIKSPPVWFIRDFQTGDSLRFPHSTFGPAGITSVRFGRTMDNIVNTLRESPNTPIAVEIEIQFMELIDMRQDSIF</Hsp_hseq> + <Hsp_midline>+G+ + ++++A + +TA++PS+R+AG D + LY NGLLFTAY+ + + + RS+R + + A ++ + TG N+ + + P+ ILLPRS +D E SH++ D DS++++G S V S ++G +ES + G++AD E + ++ + G+D RTK++ S DL+ +I+IY F YG T T A ++ E K T + T P N ++ ++ F++N+ V+ +P VWF+R+F T FGP I S+RF +T + N L +PN P +EI E++ + + S++</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>40</Hit_num> + <Hit_id>gi|392973135|ref|YP_006489093.1|</Hit_id> + <Hit_def>putative split baseplate tail tube cap [Acinetobacter phage ZZ1]</Hit_def> + <Hit_accession>YP_006489093</Hit_accession> + <Hit_len>143</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>107.071</Hsp_bit-score> + <Hsp_score>266</Hsp_score> + <Hsp_evalue>1.55074e-24</Hsp_evalue> + <Hsp_query-from>22</Hsp_query-from> + <Hsp_query-to>136</Hsp_query-to> + <Hsp_hit-from>19</Hsp_hit-from> + <Hsp_hit-to>143</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>59</Hsp_identity> + <Hsp_positive>80</Hsp_positive> + <Hsp_gaps>10</Hsp_gaps> + <Hsp_align-len>125</Hsp_align-len> + <Hsp_qseq>SAGQSSQSAKIKSTI-TAQYPSERSAGNDTSGSLRVHDLYKNGLLFTAYDMNSRTTGDMRSMRLGEMK-----RTANSVVKSITG----TNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDS</Hsp_qseq> + <Hsp_hseq>SAGQSQKSKETKTKIMTAQFPAERAASVDTTNAAEVGQNYQNGLLFTAYEYTSRTTPDLRSMRQRVQKSYKVLESTQKILSAVAGVSGQTEGRSTSKAPVANILMPRSKTDSDNTSHKFNDVGES</Hsp_hseq> + <Hsp_midline>SAGQS +S + K+ I TAQ+P+ER+A DT+ + V Y+NGLLFTAY+ SRTT D+RSMR K + ++ ++ G T K PV NIL+PRSK+D ++ SHKFNDVG+S</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>41</Hit_num> + <Hit_id>gi|646519388|ref|WP_025548737.1|</Hit_id> + <Hit_def>hypothetical protein [Vibrio parahaemolyticus] >gi|655769907|gb|KEE53216.1| hypothetical protein EM88_01435 [Vibrio parahaemolyticus] >gi|655811799|gb|KEE89780.1| hypothetical protein EM91_01710 [Vibrio parahaemolyticus]</Hit_def> + <Hit_accession>WP_025548737</Hit_accession> + <Hit_len>356</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>60.8474</Hsp_bit-score> + <Hsp_score>146</Hsp_score> + <Hsp_evalue>3.83249e-07</Hsp_evalue> + <Hsp_query-from>87</Hsp_query-from> + <Hsp_query-to>346</Hsp_query-to> + <Hsp_hit-from>109</Hsp_hit-from> + <Hsp_hit-to>342</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>65</Hsp_identity> + <Hsp_positive>105</Hsp_positive> + <Hsp_gaps>44</Hsp_gaps> + <Hsp_align-len>269</Hsp_align-len> + <Hsp_qseq>MKRTANSVVKSITGTNTNKVDKIPVVNILLPRSKSDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNT-ARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNF--------GTTSKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASV</Hsp_qseq> + <Hsp_hseq>MPLLQDSLVHDIGGS----VDDITSVALAAGLDVADLEGDLSKLSSGVKSLVQNAKDITVGTVSQQAG-------QGSRQSTLASGNKVIQNNPGTDSWQGTQLREQTLIWQFNPKSLPELKAVASIIKTFKLLSLGSIGNSS------------------NELT--QANNNDRLNNPYGHIAS---CIKTPPLWFLEEVSDYYTGQDGAGARYTDRL-VFGPAAIASIKVNRTPDQYWKTFKGTAGDPASLDLEITFIELLPLDKETV</Hsp_hseq> + <Hsp_midline>M +S+V I G+ VD I V + +D+E K + SL+ G +S A + Q +A N+ I N + G R + W P+S+ +L A+ I + F S G G S+ + LT +AN ND + S + P +WF+ G +++ R VFGP I SI+ ++TP+ + P++ LEIT E+L L++ +V</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>42</Hit_num> + <Hit_id>gi|589286464|ref|YP_009006262.1|</Hit_id> + <Hit_def>tail-tube assembly protein [Vibrio phage VH7D] >gi|432142395|gb|AGB06975.1| tail-tube assembly protein [Vibrio phage VH7D]</Hit_def> + <Hit_accession>YP_009006262</Hit_accession> + <Hit_len>378</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>58.5362</Hsp_bit-score> + <Hsp_score>140</Hsp_score> + <Hsp_evalue>2.65852e-06</Hsp_evalue> + <Hsp_query-from>60</Hsp_query-from> + <Hsp_query-to>344</Hsp_query-to> + <Hsp_hit-from>61</Hsp_hit-from> + <Hsp_hit-to>339</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>73</Hsp_identity> + <Hsp_positive>122</Hsp_positive> + <Hsp_gaps>50</Hsp_gaps> + <Hsp_align-len>307</Hsp_align-len> + <Hsp_qseq>YKNGLLFTAYDMNSRTTGDMRSMR----------------LGEMKRTANSVVKSITGTNTNKVDKIP--VVNILLPRSKSDV--ESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTARSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEWYKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTT--SKFDGRAEVFGPCQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRA</Hsp_qseq> + <Hsp_hseq>HPNFFIFRAYDLAHTTKQHYTDMRSSFTAAQTENEQSGEVPSELKATLALYAPNIVEEVSHEYDKTPTSVLNDFLASAASAAGSDTVSEGVDRGKRAVATAAGATLAQIKRSFIQSNAAGQLEK-NSSVVTD------NVTVTAYKGTAQRTQTMVYQFHPKSLDELKVVAEIIKTF----YG------LSLPVKGQID----SQLLDTGTANLGSGFAAGFAKYATLLKT------PPVWMIEEVSDTDATRYTPRF-IFGPAGITSVKLNRTPDQYWRTFRGTAGDPAGIELEITFSELIPLDRA</Hsp_hseq> + <Hsp_midline>+ N +F AYD+ T MR E+K T +I +++ DK P V+N L + S ++VS + ++ + G T + + + G LE ++ D N + Y G RT+ + P+S+ +L + EI + F YG + VK Q+D S LDT T + + F K + L P VW + T +++ R +FGP I S++ ++TP+ + P+ LEIT E++ L+RA</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>48094830</Statistics_db-num> + <Statistics_db-len>17186091396</Statistics_db-len> + <Statistics_hsp-len>148</Statistics_hsp-len> + <Statistics_eff-space>2043815480868</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>5</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>Merlin_5</Iteration_query-def> + <Iteration_query-len>576</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gi|456351275|ref|YP_007501227.1|</Hit_id> + <Hit_def>baseplate hub [Salmonella phage S16] >gi|347466340|gb|AEO97126.1| baseplate hub [Salmonella phage S16] >gi|408387124|gb|AFU64133.1| baseplate hub [Salmonella phage STML-198]</Hit_def> + <Hit_accession>YP_007501227</Hit_accession> + <Hit_len>577</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>675.626</Hsp_bit-score> + <Hsp_score>1742</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>577</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>345</Hsp_identity> + <Hsp_positive>442</Hsp_positive> + <Hsp_gaps>3</Hsp_gaps> + <Hsp_align-len>578</Hsp_align-len> + <Hsp_qseq>MKSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVDNVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEPE--NNKKDQKKDDKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTPKPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>MKTENMTSFRRRKVIADSKGERDAAAAASNQVESLDSIGYKLDSVQSATELTSEVIEQKSNDIISAVNDTTAGVELTAEFAENTSKTVRELTDVTSAISDKISKLTDMLEQKIQAVQQKFVDSSKVTDDTLKVIGDSIPEPVESNLPAIPEKIFDKPEENNS-PDADFFPTLPSKAEEVDNKKDSDKKILDTENLLKDLVGTTKTGFKATVSITDKISNMLFKYTVSALAESAKLAGTIFAIVLGIDLLRAHFKYWSDKFSSNFDEFSQSAGEWGSLLQSVLGSLQEIKKFWENNDWSGLAVAIVKGLADVLYNLSELMSLGISKISAAILSALGFDNAALSIKGAALEGFQARTGNELNEEDQDTLARYQTRRIQEGPDAFDKFSEYKTRAFDFITGRDNKNTTTTEQEREAEVKKLKSLPEEELNEINKKSNNARAALVRFEKYMGDVDPENATNIESLDKAYNNVKSLVNDSELNKAPAIKKELEVRLQKAEARYQKIKTESKPEPAAPSASEDVQKVQNIEKAEQAKKSDANQSSSSSVVNAQVNNVNNSRTIQTINPVTATPAPGVFKATGVN</Hsp_hseq> + <Hsp_midline>MK+ENM++ RRRKVIADSKGERDAA+ AS+QV+SL+ IG KLD VQSA EL +EVIE+K N++I +V++ G EL AE +E T+++++ LT V S ISDK+SKL MLE K+QAV+QK +S L VI D +P+P E P +PE+I ++NN+ PD DFFP +P + E +NKKD K ++L DL+ TTK GFKAT+SITDKIS+MLFKYTV+ALAE+AK+A +FA+VLGIDLLR HFKYW+DKF SNFDEFS AGEWG LLQS+ G L +IKKFWE DWSGLAVAIVKGLADV+YNLSE+MSLGISKISA+IL ALGF+NAA +I+G+ALEGFQ RTGN L+E+DQ LA+YQ++RI+EGP DK E+KTRAFD++ GR+NK +T +R+ E + LK++ E+ E K N ARAA+ R EKY+GDVDPEN TN++SL+KAYN+ K ++DS ++ PA KKEL+ R Q+ E++YQK+K ++ P+PAAP+ SED Q+VQNI+KAE AK+ + +V N QVNNVNNS+TI + VTATPAPGVF ATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>2</Hit_num> + <Hit_id>gi|589889938|ref|YP_009005474.1|</Hit_id> + <Hit_def>baseplate hub subunit tail length determinator [Enterobacter phage PG7] >gi|583927851|gb|AHI61113.1| baseplate hub subunit tail length determinator [Enterobacter phage PG7]</Hit_def> + <Hit_accession>YP_009005474</Hit_accession> + <Hit_len>586</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>549.28</Hsp_bit-score> + <Hsp_score>1414</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>586</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>297</Hsp_identity> + <Hsp_positive>414</Hsp_positive> + <Hsp_gaps>20</Hsp_gaps> + <Hsp_align-len>591</Hsp_align-len> + <Hsp_qseq>MKSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVDNVAE-------GTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPE---RILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKDD--KKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTPKPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANT-QVNNV-NNSKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>MKTENMKTMRR-KVIEEGRSERDAAKAASTQAESLSVLSSQLDDLQTQAELTSEVIEDKGNQVIDALNRVDQSIIDTTAGAELTAEASERTTEAVKQQTEVSNKISDKLSKLTELLNERLSAITPNLPQISV-PDTSLSVVEDAVPV--DIVTPGLPELLQELIPDPVNNTNNPNDAFFPTVPENPESDSKKGADEERKKKDSDTLSNLLKATKSGFKASMSITDRIAGMLFKYTVTAVIEAAKTAALLFSIVLGIDVIMKHFKYWSDKFTSDFDKFSAEAGEWGSTLSSIFGTLENIQKFWEAGDWSGLTVAIVKGVTEIIYNLSELISLGMSKVAAAILSIIPGLGDAALSVEGAALEGFQERTGNSLSKEDQDTLAKYQSSKIEKGENFFDKVSQGKTWIVNKITGDANISDFVTDEERESQNEKLRQMKPEEREQVLKKGNEARAAIVRFEKYMEQINPDDKRSVESADKAYANLQTQLNDTDLNNSPVTKKELSARMNIVTAKYDKLK-GKEPQPAPSSQSEDVKKVESIEKNKAAKEASLGTSAGAAAANLFNTNNVINNSRTINTVSPVTSTNAPGVFGATGVN</Hsp_hseq> + <Hsp_midline>MK+ENM TMRR KVI + + ERDAA AS Q +SL ++ +LDD+Q+ EL +EVIE+KGN +ID+++ V + G EL AEASERTTE++K T V++ ISDKLSKL +L ++ A+ + + T LSV+ED +P + +PGLPE ++P +N N P++ FFP VP+ PE++ K ++ KK +D L +LLK TK GFKA++SITD+I+ MLFKYTVTA+ EAAK AA+LF++VLGID++ HFKYW+DKF S+FD+FSAEAGEWG L SIFG L +I+KFWEAGDWSGL VAIVKG+ ++IYNLSE++SLG+SK++A+IL + G +AA ++ G+ALEGFQERTGNSLS++DQ LAKYQS +IE+G DK + KT + + G N D +R+ + + L+ M PE+RE+ L K NEARAA+ R EKY+ ++P++ +++S +KAY + + ++D+ +++ P TKKEL R V +KY KLK P+PA + SED ++V++I+K + AKE S ++ AN NNV NNS+TI+ V VT+T APGVFGATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>3</Hit_num> + <Hit_id>gi|311993187|ref|YP_004010053.1|</Hit_id> + <Hit_def>gp29 base plate hub subunit, tail length determinator [Enterobacteria phage CC31] >gi|284178025|gb|ADB81691.1| gp29 base plate hub subunit, tail length determinator [Enterobacteria phage CC31]</Hit_def> + <Hit_accession>YP_004010053</Hit_accession> + <Hit_len>586</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>546.584</Hsp_bit-score> + <Hsp_score>1407</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>586</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>296</Hsp_identity> + <Hsp_positive>412</Hsp_positive> + <Hsp_gaps>22</Hsp_gaps> + <Hsp_align-len>592</Hsp_align-len> + <Hsp_qseq>MKSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVDNVAE-------GTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPE---RILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKDD--KKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTPKPAAPATSEDNQRVQNIQK---AENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>MKTENMKTMRR-KVIEEGRSERDAAKAASTQAESLSVLSSQLDDLQTQAELTSEVIEDKGNQVIDALNRVDQSIIDTTAGAELTAEASERTTEAVKQQTEVSNKISDKLSKLTELLNERLSAITPNLPQISV-PDTSLSVVEDAVPV--DIVTPGLPELLQELIPDPVNNTNNPNDAFFPTVPENPESDSKKGADEERKKKDSDTLSNLLKATKSGFKASMSITDRIAGMLFKYTVTAVIEAAKTAALLFSIVLGIDVIMKHFKYWSDKFTSDFDKFSAEAGEWGSTLSSIFGTLENIQKFWEAGDWSGLTVAIVKGVTEIIYNLSELISLGMSKVAAAILSLIPGLGDAALSVEGAALEGFQERTGNSLSKEDQDTLAKYQSSKIEKGENFFDKVSQGKTWIVNKITGDANISDFVTDEERTAQNEKLRQMKPEEREQVLKKGNEARAAIVRFEKYMEQINPDDKRSVQSADKAYANLQTQLNDTDLNNSPITKKELNARMNIVTAKYDKLK-GKEPQPAPSSQSEDVKKVESIEKNKAAEKASLGTGAGAAAANLFNTN-NVINNSRTINTVSPVTSTNAPGVFGATGVN</Hsp_hseq> + <Hsp_midline>MK+ENM TMRR KVI + + ERDAA AS Q +SL ++ +LDD+Q+ EL +EVIE+KGN +ID+++ V + G EL AEASERTTE++K T V++ ISDKLSKL +L ++ A+ + + T LSV+ED +P + +PGLPE ++P +N N P++ FFP VP+ PE++ K ++ KK +D L +LLK TK GFKA++SITD+I+ MLFKYTVTA+ EAAK AA+LF++VLGID++ HFKYW+DKF S+FD+FSAEAGEWG L SIFG L +I+KFWEAGDWSGL VAIVKG+ ++IYNLSE++SLG+SK++A+IL + G +AA ++ G+ALEGFQERTGNSLS++DQ LAKYQS +IE+G DK + KT + + G N D +R + + L+ M PE+RE+ L K NEARAA+ R EKY+ ++P++ ++QS +KAY + + ++D+ +++ P TKKEL+ R V +KY KLK P+PA + SED ++V++I+K AE A + N+ NT N +NNS+TI+ V VT+T APGVFGATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>4</Hit_num> + <Hit_id>gi|422934607|ref|YP_007004568.1|</Hit_id> + <Hit_def>phage baseplate hub [Enterobacteria phage ime09] >gi|339791390|gb|AEK12447.1| phage baseplate hub [Enterobacteria phage ime09]</Hit_def> + <Hit_accession>YP_007004568</Hit_accession> + <Hit_len>590</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>447.588</Hsp_bit-score> + <Hsp_score>1150</Hsp_score> + <Hsp_evalue>1.35305e-146</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>590</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>267</Hsp_identity> + <Hsp_positive>374</Hsp_positive> + <Hsp_gaps>41</Hsp_gaps> + <Hsp_align-len>602</Hsp_align-len> + <Hsp_qseq>KSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVDNVAEGTELAAEASERTTESIKTLTGV----ASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFP-PVPQEP--ENNKKDQKKD--DKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFM-------SNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGII----DKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTP--KPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNN----SKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>KPQEMQTMRR-KVISDNKSTQEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVESAVSDTTAGSELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTA--GIQQTGTSLATVESAIPVKVVEDDTAESVG---PLLPAPEAVNNDPDADFFPTPQPVEPKQESPEEKQKKDAFNLKLSQALDKLTKTVDFGFKKSISITDKISSMLFKYTVSAAIEAAKMTAMILAVVVGIDLLMVHFKYWSDKFSQAWDLFSTDFTKFSSETGTWGPLLQSIFSSIDEIKKFWEAGDWGGLTVAIVEGLGKVLYNLGELIQLGMAKLSAAILRVIPGMKDTADEVEGRALENFQNSTGASLNKEDQEKVANYQDKRMNDDLGPIAKGLDKIANWKTRASNWIRGVDNKEALTTDEERAAEEEKLKQLSPEERKNALMKANEARAAMIRFEKYADSADMSKDSTVKSVEAAYEDLKKRMDDPDLNNSPAVKKELAARFSKIDATYQELKK-NQPNAKPETSAKSPEAKQVQVIEK-------NKAQQAPVQQASPSINNTNNVIKKNTVVHNMTPVTSTTAPGVFDATGVN</Hsp_hseq> + <Hsp_midline>K + M TMRR KVI+D+K ++AA +AS+ + L I KLDD Q+A+EL+A+ +EEK N +I ++DNV SE E+++ + ++ KL KL S+LE K+Q +Q++G S +T S I K+ + D ES G +LP + NN PD DFFP P P EP E+ ++ QKKD + K + L L KT GFK +ISITDKISSMLFKYTV+A EAAKM AM+ A+V+GIDLL +HFKYW+DKF ++F +FS+E G WG LLQSIF + +IKKFWEAGDW GL VAIV+GL V+YNL E++ LG++K+SA+IL + G ++ A + G ALE FQ TG SL+++DQ+ +A YQ KR+ + G I DK +KTRA +W+ G +NK T +R E + LK ++PE+R+ L+K NEARAA+ R EKY D + ++S+E AY KK + D +++ PA KKEL RF ++++ YQ+LK+ N P KP A S + ++VQ I+K +K + A+ +NN NN + +H + VT+T APGVF ATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>5</Hit_num> + <Hit_id>gi|228861124|ref|YP_002854147.1|</Hit_id> + <Hit_def>gp29 base plate hub [Enterobacteria phage RB51] >gi|227438798|gb|ACP31110.1| gp29 base plate hub [Enterobacteria phage RB51] >gi|291290410|dbj|BAI83205.1| baseplate hub subunit/tail length determinator [Enterobacteria phage AR1]</Hit_def> + <Hit_accession>YP_002854147</Hit_accession> + <Hit_len>590</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>442.965</Hsp_bit-score> + <Hsp_score>1138</Hsp_score> + <Hsp_evalue>9.14277e-145</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>590</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>264</Hsp_identity> + <Hsp_positive>378</Hsp_positive> + <Hsp_gaps>49</Hsp_gaps> + <Hsp_align-len>606</Hsp_align-len> + <Hsp_qseq>KSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVDNVAEGTELAAEASERTTESIKTLTGV----ASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLP----DPDEPESPGLPERILPPLDDNNNLPDEDFFP-PVPQEP--ENNKKDQKKD--DKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFM-------SNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGII----DKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTP--KPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNN----SKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>KPQEMQTMRR-KVISDNKPTQEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIVGAIDNVESAVSDTTAGSELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTA--GIQQTG----TSLAVVENAIPVKVVEDDTAESVG---PLLPAPEAVNNDPDADFFPTPQPIEPKQESPEEKQKRDAFNLKLSQALDKLTKTVDFGFKKSISITDKISSMLFKYTVSAAIEAAKMVALIMAVVIGIDLLMVHFKYWSDKFSKAWDLFSTDFTKFSSETGTWGPLLQSIFDSIDEIKKFWEAGDWGGLTVAIVEGLGSVLYNLGELIQLGMAKLSAAILRVIPGMKDTADEVEGRALENFQNSTGASLNKEDQEKVANYQDKRMNDDLGPIAKGLDKIANWKTRASNWIRGVDNKEALTTDEERAAEEEKLKQLSPEERKNALMKANEARAAMIRFEKYADSADMSKDSTVKSIEAAHEDLKKRMNDPDLNNSPAVKKELASRFAKIDATYQELKK-NQPEAKPETSAKSPEAKQVQVIEK-------NKAQQAPVQQASPSINNTNNVIKKNTVVHNMTPVTSTTAPGVFGATGVN</Hsp_hseq> + <Hsp_midline>K + M TMRR KVI+D+K ++AA +AS+ + L I KLDD Q+A+EL+A+ +EEK N ++ ++DNV SE E+++ + ++ KL KL S+LE K+Q +Q++G T L+V+E+ +P + D ES G +LP + NN PD DFFP P P EP E+ ++ QK+D + K + L L KT GFK +ISITDKISSMLFKYTV+A EAAKM A++ A+V+GIDLL +HFKYW+DKF ++F +FS+E G WG LLQSIF + +IKKFWEAGDW GL VAIV+GL V+YNL E++ LG++K+SA+IL + G ++ A + G ALE FQ TG SL+++DQ+ +A YQ KR+ + G I DK +KTRA +W+ G +NK T +R E + LK ++PE+R+ L+K NEARAA+ R EKY D + ++S+E A+ KK ++D +++ PA KKEL RF ++++ YQ+LK+ N P KP A S + ++VQ I+K +K + A+ +NN NN + +H + VT+T APGVFGATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>6</Hit_num> + <Hit_id>gi|422934972|ref|YP_007004932.1|</Hit_id> + <Hit_def>baseplate hub subunit tail length determinator [Escherichia phage wV7] >gi|343177526|gb|AEM00852.1| baseplate hub subunit tail length determinator [Escherichia phage wV7]</Hit_def> + <Hit_accession>YP_007004932</Hit_accession> + <Hit_len>590</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>442.58</Hsp_bit-score> + <Hsp_score>1137</Hsp_score> + <Hsp_evalue>1.58375e-144</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>590</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>263</Hsp_identity> + <Hsp_positive>378</Hsp_positive> + <Hsp_gaps>49</Hsp_gaps> + <Hsp_align-len>606</Hsp_align-len> + <Hsp_qseq>KSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVDNVAEGTELAAEASERTTESIKTLTGV----ASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLP----DPDEPESPGLPERILPPLDDNNNLPDEDFFP-PVPQEP--ENNKKDQKKD--DKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFM-------SNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGII----DKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTP--KPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNN----SKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>KPQEMQTMRR-KVISDNKPTQEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIVGAIDNVESAVSDTTAGSELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTA--GIQQTG----TSLAVVENAIPVKVVEDDTAESVG---PLLPAPEAVNNDPDADFFPTPQPIEPKQESPEEKQKRDAFNLKLSQALDKLTKTVDFGFKKSISITDKISSMLFKYTVSAAIEAAKMVALIMAVVIGIDLLMVHFKYWSDKFSKAWDLFSTDFTKFSSETGTWGPLLQSIFDSIDEIKKFWEAGDWGGLTVAIIEGLGSVLYNLGELIQLGMAKLSAAILRVIPGMKDTADEVEGRALENFQNSTGASLNKEDQEKVANYQDKRMNDDLGPIAKGLDKIANWKTRASNWIRGVDNKEALTTDEERAAEEEKLKQLSPEERKNALMKANEARAAMIRFEKYADSADMSKDSTVKSIEAAHEDLKKRMNDPDLNNSPAVKKELASRFAKIDATYQELKK-NQPEAKPETSAKSPEAKQVQVIEK-------NKAQQAPVQQASPSINNTNNVIKKNTVVHNMTPVTSTTAPGVFGATGVN</Hsp_hseq> + <Hsp_midline>K + M TMRR KVI+D+K ++AA +AS+ + L I KLDD Q+A+EL+A+ +EEK N ++ ++DNV SE E+++ + ++ KL KL S+LE K+Q +Q++G T L+V+E+ +P + D ES G +LP + NN PD DFFP P P EP E+ ++ QK+D + K + L L KT GFK +ISITDKISSMLFKYTV+A EAAKM A++ A+V+GIDLL +HFKYW+DKF ++F +FS+E G WG LLQSIF + +IKKFWEAGDW GL VAI++GL V+YNL E++ LG++K+SA+IL + G ++ A + G ALE FQ TG SL+++DQ+ +A YQ KR+ + G I DK +KTRA +W+ G +NK T +R E + LK ++PE+R+ L+K NEARAA+ R EKY D + ++S+E A+ KK ++D +++ PA KKEL RF ++++ YQ+LK+ N P KP A S + ++VQ I+K +K + A+ +NN NN + +H + VT+T APGVFGATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>7</Hit_num> + <Hit_id>gi|604671901|gb|AHV82895.1|</Hit_id> + <Hit_def>baseplate hub subunit, tail length determinator [Escherichia phage vB_EcoM_PhAPEC2]</Hit_def> + <Hit_accession>AHV82895</Hit_accession> + <Hit_len>590</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>441.425</Hsp_bit-score> + <Hsp_score>1134</Hsp_score> + <Hsp_evalue>3.83095e-144</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>590</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>269</Hsp_identity> + <Hsp_positive>375</Hsp_positive> + <Hsp_gaps>30</Hsp_gaps> + <Hsp_align-len>598</Hsp_align-len> + <Hsp_qseq>MKSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSV-------DNVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLP-DPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKD-DKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMS-------NFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKAGEF----KTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKE-DNTPKPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQT-VTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>MKPEEMKSMRRNKVIADNKPQKVAATAATDSLEALNNISSKLDDVQAASELTSQSVEDKGNGIIESIGDLKNSTDNTAEGTELIAEVIEKQTEVTKSINEVSSAISSKLDRLATLLEQKLQ-TSTAIQNTGG---TSLEVIENAIPVKVVENETSDELFKALPTPEKIDNKPDEDFFPVPVQESANSTSDSKGGISFKLSDKIAMLTKTVQTGFNKSISISDRIAGMLFKYTITAAIEAAKMAALILGIVIGIDLLIVHFKYWTDKFTSAWDLFDENFTKFSDEAKEWGKFLSDIFTSIDSIKQLWEAGDWGGLTVAIVKGVGTALMNLGELIQLGMAKLSASILRAIGFGDTADEIEGRALEGFQETTGNKLKKEDQEKVAKYQMKRDDGELGTVSKGLDMLQRGKTFVTNWVRGNDNKEEFSTSDERAAESAKLKELPEEERKEAYIKANETRAALVRFEDYIDKIDMTNPENAKNVEKSYADLSKLIKDPELNKTPVVKKELDARFEKLNNKMAEAKKAQTTVKPESSSKSPEAKQVQSIEKGRAS--ESKQQQPVAAISNT--NNVVKKNTVVQNMTPVTSTTAPGIFHATGVN</Hsp_hseq> + <Hsp_midline>MK E M +MRR KVIAD+K ++ AA+ A+D +++L I KLDDVQ+A+EL ++ +E+KGN +I+S+ DN AEGTEL AE E+ TE K++ V+S IS KL +LA++LE K+Q +Q +G T L VIE+ +P E E+ + LP + +N PDEDFFP QE N+ D K K +D + L KT + GF +ISI+D+I+ MLFKYT+TA EAAKMAA++ +V+GIDLL +HFKYWTDKF S NF +FS EA EWG L IF + IK+ WEAGDW GL VAIVKG+ + NL E++ LG++K+SASIL A+GF + A I G ALEGFQE TGN L ++DQ+ +AKYQ KR + G + K + KT +WV G +NK + + + +R E+ LK + E+R+E IK NE RAA+ R E YI +D NP N +++EK+Y K I D ++ P KKELD RF+++ +K + K+ T KP + + S + ++VQ+I+K + +SK+ ++NT NNV T+ Q T VT+T APG+F ATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>8</Hit_num> + <Hit_id>gi|32453687|ref|NP_861896.1|</Hit_id> + <Hit_def>gp29 baseplate hub subunit, tail length determinator [Enterobacteria phage RB69] >gi|32350506|gb|AAP76105.1| gp29 baseplate hub subunit, tail length determinator [Enterobacteria phage RB69]</Hit_def> + <Hit_accession>NP_861896</Hit_accession> + <Hit_len>590</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>441.425</Hsp_bit-score> + <Hsp_score>1134</Hsp_score> + <Hsp_evalue>4.26665e-144</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>590</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>270</Hsp_identity> + <Hsp_positive>376</Hsp_positive> + <Hsp_gaps>34</Hsp_gaps> + <Hsp_align-len>600</Hsp_align-len> + <Hsp_qseq>MKSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSV-------DNVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLP-DPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKD-DKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMS-------NFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKAGEF----KTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKE-DNTPKPAAPATSEDNQRVQNIQK--AENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQT-VTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>MKPEEMKSMRRNKVIADNKPQKVAATAATDSLEALNNISSKLDDVQAASELTSQSVEDKGNGIIESIGDLKNSTDNTAEGTELIAEVIEKQTEVTKSINEVSSAISSKLDRLATLLEQKLQ-TSTAIQNTGG---TSLEVIENAIPVKVVENETSDELFKAFPTPEKIDNKPDEDFFPTPVQESANSTSDSKGGISFKLSDKIAMLTKTVQTGFNKSISISDRIAGMLFKYTITAAIEAAKMAALILGIVIGIDLLIVHFKYWTDKFTSAWDLFDENFTKFSDEAKEWGKFLSDIFTSIDSIKQLWEAGDWGGLTVAIVKGVGTALMNLGELIQLGMAKLSASILRAIGFGDTADEIEGRALEGFQETTGNKLKKEDQEKVAKYQMKRDDGELGTVSKGLDMLQRGKTFVTNWVRGNDNKEEFSTSDERAAESAKLKELPEEERKEAYIKANETRAALVRFEDYIDKIDMTNPENAKNVEKSYADLSKLIKDPELNKTPVVKKELDARFEKLNNKMAEAKKAQTTVKPESSSKSPEAKQVQSIEKGRASESKQQQPVAT----ISNT--NNVVKKNTVVQNMTPVTSTTAPGIFHATGVN</Hsp_hseq> + <Hsp_midline>MK E M +MRR KVIAD+K ++ AA+ A+D +++L I KLDDVQ+A+EL ++ +E+KGN +I+S+ DN AEGTEL AE E+ TE K++ V+S IS KL +LA++LE K+Q +Q +G T L VIE+ +P E E+ + P + +N PDEDFFP QE N+ D K K +D + L KT + GF +ISI+D+I+ MLFKYT+TA EAAKMAA++ +V+GIDLL +HFKYWTDKF S NF +FS EA EWG L IF + IK+ WEAGDW GL VAIVKG+ + NL E++ LG++K+SASIL A+GF + A I G ALEGFQE TGN L ++DQ+ +AKYQ KR + G + K + KT +WV G +NK + + + +R E+ LK + E+R+E IK NE RAA+ R E YI +D NP N +++EK+Y K I D ++ P KKELD RF+++ +K + K+ T KP + + S + ++VQ+I+K A +K+Q +T ++NT NNV T+ Q T VT+T APG+F ATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>9</Hit_num> + <Hit_id>gi|642905806|ref|YP_009037575.1|</Hit_id> + <Hit_def>baseplate hub subunit, tail length determinator [Escherichia phage vB_EcoM_JS09] >gi|642903960|gb|AIA79980.1| baseplate hub subunit, tail length determinator [Escherichia phage vB_EcoM_JS09]</Hit_def> + <Hit_accession>YP_009037575</Hit_accession> + <Hit_len>590</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>441.039</Hsp_bit-score> + <Hsp_score>1133</Hsp_score> + <Hsp_evalue>6.28771e-144</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>590</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>267</Hsp_identity> + <Hsp_positive>375</Hsp_positive> + <Hsp_gaps>30</Hsp_gaps> + <Hsp_align-len>598</Hsp_align-len> + <Hsp_qseq>MKSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSV-------DNVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLP-DPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKD-DKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMS-------NFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKAGEF----KTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKE-DNTPKPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQT-VTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>MKPEEMKSMRRNKVIADNKPQKVAATAATDSLEALNDISSKLDDVQAASELTSQSVEDKGNGIIESIGDLKNSTDNTAEGTELIAEVIEKQTEVTKSINEVSSAISSKLDRLATLLEQKLQ-TSTAIQNTGG---TSLEVIENAIPVKVVENETSDELFKAFPTPEKIDNKPDEDFFPAPVQESANSTSDSKGGISFKLSDKIAMLTKTVQTGFNKSISISDRIAGMLFKYTITAAIEAAKLAALILGIVIGIDLLIVHFKYWTDKFTSAWDLFDENFTKFSDEAKEWGKFLSDIFTSIDSIKQLWEAGDWGGLTVAIVKGVGTALMNLGELIQLGMAKLSASILRAIGFGDTADEIEGRALEGFQETTGNTLKKEDQEKVAKYQMKRDDGELGTVSKGLDMLQRGKTFVTNWVRGNDNKEEFSTSDERAAESAKLKELPEEERKEAYIKANETRAALVRFEDYIDKIDMTNPENAKNVEKSYADLSKLIKDPELNKTPVVKKELDARFEKLNNKMAEAKKAQTTVKPESSSKSPEAKQVQSIEKGRAS--ESKQQQPVAAISNT--NNVVKKNTVVQNMTPVTSTTAPGIFHATGVN</Hsp_hseq> + <Hsp_midline>MK E M +MRR KVIAD+K ++ AA+ A+D +++L I KLDDVQ+A+EL ++ +E+KGN +I+S+ DN AEGTEL AE E+ TE K++ V+S IS KL +LA++LE K+Q +Q +G T L VIE+ +P E E+ + P + +N PDEDFFP QE N+ D K K +D + L KT + GF +ISI+D+I+ MLFKYT+TA EAAK+AA++ +V+GIDLL +HFKYWTDKF S NF +FS EA EWG L IF + IK+ WEAGDW GL VAIVKG+ + NL E++ LG++K+SASIL A+GF + A I G ALEGFQE TGN+L ++DQ+ +AKYQ KR + G + K + KT +WV G +NK + + + +R E+ LK + E+R+E IK NE RAA+ R E YI +D NP N +++EK+Y K I D ++ P KKELD RF+++ +K + K+ T KP + + S + ++VQ+I+K + +SK+ ++NT NNV T+ Q T VT+T APG+F ATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>10</Hit_num> + <Hit_id>gi|228861505|ref|YP_002854526.1|</Hit_id> + <Hit_def>gp29 base plate hub [Enterobacteria phage RB14] >gi|227438521|gb|ACP30834.1| gp29 base plate hub [Enterobacteria phage RB14]</Hit_def> + <Hit_accession>YP_002854526</Hit_accession> + <Hit_len>590</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>438.343</Hsp_bit-score> + <Hsp_score>1126</Hsp_score> + <Hsp_evalue>7.24825e-143</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>590</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>263</Hsp_identity> + <Hsp_positive>371</Hsp_positive> + <Hsp_gaps>41</Hsp_gaps> + <Hsp_align-len>602</Hsp_align-len> + <Hsp_qseq>KSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVDNVAEGTELAAEASERTTESIKTLTGV----ASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFP-PVPQEP--ENNKKDQKKD--DKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFM-------SNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGII----DKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTP--KPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNN----SKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>KPQEMQTMRR-KVISDNKPTQEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVESAVSDTTAGSELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTA--GIQQTGTSLATVESAIPVKVVEDDTAESVG---PLLPAPEAVNNDPDADFFPTPQPVEPKQESPEEKQKKEAFNLKLSQALDKLTKTVDFGFKKSISITDKISSMLFKYTVSAAIEAAKMTAMILAVVVGIDLLMVHFKYWSDKFSKAWDLFNTDFTKFSSETGTWGPLLQSIFDSIDKIKQLWEAGDWGGLTAAIVEGLGSVLFNLGELIQLGMAKLSAAILRVIPGMKDTADEVEGRALENFQNSTGASLNKEDQEKVANYQDKRMNGDLGPIAKGLDKIANWKTRASNWIRGVDNKEALTTDEERAAEEEKLKQLSPEERKNALMKANEARAAMIRFEKYADSADMSKDSTVKSVEAAYEDLKKRMDDPDLNNSPAVKKELAARFSKIDATYQELKK-NQPNAKPETSAKSPEAKQVQVIEK-------NKAQQAPVQQASPSINNTNNVIKKNTVVHNMTPVTSTTAPGVFGATGVN</Hsp_hseq> + <Hsp_midline>K + M TMRR KVI+D+K ++AA +AS+ + L I KLDD Q+A+EL+A+ +EEK N +I ++DNV SE E+++ + ++ KL KL S+LE K+Q +Q++G S +T S I K+ + D ES G +LP + NN PD DFFP P P EP E+ ++ QKK+ + K + L L KT GFK +ISITDKISSMLFKYTV+A EAAKM AM+ A+V+GIDLL +HFKYW+DKF ++F +FS+E G WG LLQSIF + IK+ WEAGDW GL AIV+GL V++NL E++ LG++K+SA+IL + G ++ A + G ALE FQ TG SL+++DQ+ +A YQ KR+ G I DK +KTRA +W+ G +NK T +R E + LK ++PE+R+ L+K NEARAA+ R EKY D + ++S+E AY KK + D +++ PA KKEL RF ++++ YQ+LK+ N P KP A S + ++VQ I+K +K + A+ +NN NN + +H + VT+T APGVFGATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>11</Hit_num> + <Hit_id>gi|414086558|ref|YP_006986747.1|</Hit_id> + <Hit_def>baseplate hub subunit tail length determinator [Enterobacteria phage vB_EcoM_ACG-C40] >gi|383396339|gb|AFH20155.1| baseplate hub subunit tail length determinator [Enterobacteria phage vB_EcoM_ACG-C40]</Hit_def> + <Hit_accession>YP_006986747</Hit_accession> + <Hit_len>590</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>437.958</Hsp_bit-score> + <Hsp_score>1125</Hsp_score> + <Hsp_evalue>8.89384e-143</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>590</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>263</Hsp_identity> + <Hsp_positive>372</Hsp_positive> + <Hsp_gaps>41</Hsp_gaps> + <Hsp_align-len>602</Hsp_align-len> + <Hsp_qseq>KSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVDNVAEGTELAAEASERTTESIKTLTGV----ASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFP-PVPQEP--ENNKKDQKKD--DKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFM-------SNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGII----DKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTP--KPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNN----SKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>KPQEMQTMRR-KVISDNKPVQEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVESAVSDTTAGSELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTA--GIQQTGTSLAVVESAIPVKVVEDDTAEFVG---PLLPAPEAVNNDPDADFFPAPQPVEPKRESPEEKQKKEAFNLKLSQALDKLTKTVDFGFKKSISITDKISSMLFKYTVSAAIEAAKMVALIMAVVIGIDLLMVHFKYWSDKFSKAWDLFSTDFKTFSSETGTWGPLLQSIFESIDEIKKFWEAGDWGGLTVAIVEGLGKVLYNLGELIQLGMAKLSAAILRVIPGMKDTADEVEGRALENFQNSTGASLNKEDQEKVANYQDKRMNGDLGPIAKGLDKIANWKTRASNWIRGVDNKEALTTDEERAAEEEKLKQLSPEERKNALMKANEARAAMIRFEKYADSADMSKDSTVKSIEAAHEDLKKRMNDPDLNNSPAVKKELASRFAKIDATYQELKK-NQPEAKPETSAKSPEAKQVQVIEK-------NKAQQAPVQQASPSINNTNNVIKKNTVVHNMTPVTSTTAPGVFGATGVN</Hsp_hseq> + <Hsp_midline>K + M TMRR KVI+D+K ++AA +AS+ + L I KLDD Q+A+EL+A+ +EEK N +I ++DNV SE E+++ + ++ KL KL S+LE K+Q +Q++G S + S I K+ + D E G +LP + NN PD DFFP P P EP E+ ++ QKK+ + K + L L KT GFK +ISITDKISSMLFKYTV+A EAAKM A++ A+V+GIDLL +HFKYW+DKF ++F FS+E G WG LLQSIF + +IKKFWEAGDW GL VAIV+GL V+YNL E++ LG++K+SA+IL + G ++ A + G ALE FQ TG SL+++DQ+ +A YQ KR+ G I DK +KTRA +W+ G +NK T +R E + LK ++PE+R+ L+K NEARAA+ R EKY D + ++S+E A+ KK ++D +++ PA KKEL RF ++++ YQ+LK+ N P KP A S + ++VQ I+K +K + A+ +NN NN + +H + VT+T APGVFGATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>12</Hit_num> + <Hit_id>gi|9632606|ref|NP_049805.1|</Hit_id> + <Hit_def>gp29 baseplate hub subunit, tail length determinator [Enterobacteria phage T4] >gi|137988|sp|P13337.1|VG29_BPT4 RecName: Full=Tail-tube assembly protein Gp29; AltName: Full=Folylpolyglutamate synthase; AltName: Full=Tail length regulator; AltName: Full=Tetrahydrofolylpolyglutamate synthase [Enterobacteria phage T4] >gi|5354230|gb|AAD42437.1|AF158101_24 gp29 baseplate hub subunit, tail length determinator [Enterobacteria phage T4] >gi|215946|gb|AAA32538.1| tail-tube assembly protein [Enterobacteria phage T4]</Hit_def> + <Hit_accession>NP_049805</Hit_accession> + <Hit_len>590</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>437.573</Hsp_bit-score> + <Hsp_score>1124</Hsp_score> + <Hsp_evalue>1.07961e-142</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>590</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>264</Hsp_identity> + <Hsp_positive>372</Hsp_positive> + <Hsp_gaps>41</Hsp_gaps> + <Hsp_align-len>602</Hsp_align-len> + <Hsp_qseq>KSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVDNVAEGTELAAEASERTTESIKTLTGV----ASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFP-PVPQEP--ENNKKDQKKD--DKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFM-------SNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGII----DKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTP--KPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNN----SKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>KPQEMQTMRR-KVISDNKPTQEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVESAVSDTSAGSELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTA--GIQQTGTSLATVESAIPVKVVEDDTAESVG---PLLPAPEAVNNDPDADFFPTPQPVEPKQESPEEKQKKEAFNLKLSQALDKLTKTVDFGFKKSISITDKISSMLFKYTVSAAIEAAKMTAMILAVVVGIDLLMIHFKYWSDKFSKAWDLFSTDFTKFSSETGTWGPLLQSIFDSIDKIKQLWEAGDWGGLTVAIVEGLGKVLFNLGELIQLGMAKLSAAILRVIPGMKDTADEVEGRALENFQNSTGASLNKEDQEKVANYQDKRMNGDLGPIAEGLDKISNWKTRASNWIRGVDNKEALTTDEERAAEEEKLKQLSPEERKNALMKANEARAAMIRFEKYADSADMSKDSTVKSVEAAYEDLKKRMDDPDLNNSPAVKKELAARFSKIDATYQELKK-NQPNAKPETSAKSPEAKQVQVIEK-------NKAQQAPVQQASPSINNTNNVIKKNTVVHNMTPVTSTTAPGVFDATGVN</Hsp_hseq> + <Hsp_midline>K + M TMRR KVI+D+K ++AA +AS+ + L I KLDD Q+A+EL+A+ +EEK N +I ++DNV + SE E+++ + ++ KL KL S+LE K+Q +Q++G S +T S I K+ + D ES G +LP + NN PD DFFP P P EP E+ ++ QKK+ + K + L L KT GFK +ISITDKISSMLFKYTV+A EAAKM AM+ A+V+GIDLL IHFKYW+DKF ++F +FS+E G WG LLQSIF + IK+ WEAGDW GL VAIV+GL V++NL E++ LG++K+SA+IL + G ++ A + G ALE FQ TG SL+++DQ+ +A YQ KR+ G I DK +KTRA +W+ G +NK T +R E + LK ++PE+R+ L+K NEARAA+ R EKY D + ++S+E AY KK + D +++ PA KKEL RF ++++ YQ+LK+ N P KP A S + ++VQ I+K +K + A+ +NN NN + +H + VT+T APGVF ATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>13</Hit_num> + <Hit_id>gi|525334458|gb|AGR46140.1|</Hit_id> + <Hit_def>baseplate hub subunit [Yersinia phage PST]</Hit_def> + <Hit_accession>AGR46140</Hit_accession> + <Hit_len>590</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>437.187</Hsp_bit-score> + <Hsp_score>1123</Hsp_score> + <Hsp_evalue>1.95194e-142</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>590</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>267</Hsp_identity> + <Hsp_positive>373</Hsp_positive> + <Hsp_gaps>47</Hsp_gaps> + <Hsp_align-len>605</Hsp_align-len> + <Hsp_qseq>KSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVDNV-------AEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFP-PVPQEP--ENNKKDQKKD--DKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFM-------SNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGII----DKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTP--KPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNN----SKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>KPQEMQTMRR-KVISDNKPTQEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVEGAVSDTTAGSELIAETVEIGNNINKE---IGESLGSKLDKLTSLLEQKIQTA--GIQQTGTSLATVESAIPVKVVEDDTAESVG---PLLPAPEAVNNDPDADFFPTPQPVEPKQESPEEKQKKDAFNLKLSQALDKLTKTVDFGFKKSISITDKISSMLFKYTVSAAIEAAKMTAMILAVVVGIDLLMVHFKYWSDKFSKAWDLFNTDFTKFSSETGTWGPLLQSIFDSIDKIKQLWEAGDWGGLTVAIIEGLGKVLFNLGELIQLGMAKLSAAILRVIPGMKDTADEVEGRALENFQNSTGASLNKEDQEKVANYQDKRMNGDLGPIAKGLDKIANWKTRASNWIRGVDNKEALTTDEERAAEEEKLKQLSPEERKNALMKANEARAAMIRFEKYADSADMSKDSTVKSVEAAYEDLKKRMDDPDLNNSPAVKKELAARFSKIDATYQELKK-NQPNAKPETSAKSPEAKQVQVIEK-------NKAQQAPVQQASPSINNTNNVIKKNTVVHNMTPVTSTTAPGVFDATGVN</Hsp_hseq> + <Hsp_midline>K + M TMRR KVI+D+K ++AA +AS+ + L I KLDD Q+A+EL+A+ +EEK N +I ++DNV G+EL AE E K + ++ KL KL S+LE K+Q +Q++G S +T S I K+ + D ES G +LP + NN PD DFFP P P EP E+ ++ QKKD + K + L L KT GFK +ISITDKISSMLFKYTV+A EAAKM AM+ A+V+GIDLL +HFKYW+DKF ++F +FS+E G WG LLQSIF + IK+ WEAGDW GL VAI++GL V++NL E++ LG++K+SA+IL + G ++ A + G ALE FQ TG SL+++DQ+ +A YQ KR+ G I DK +KTRA +W+ G +NK T +R E + LK ++PE+R+ L+K NEARAA+ R EKY D + ++S+E AY KK + D +++ PA KKEL RF ++++ YQ+LK+ N P KP A S + ++VQ I+K +K + A+ +NN NN + +H + VT+T APGVF ATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>14</Hit_num> + <Hit_id>gi|299780553|gb|ADJ39915.1|</Hit_id> + <Hit_def>baseplate hub subunit tail length determinator [Enterobacteria phage T4T]</Hit_def> + <Hit_accession>ADJ39915</Hit_accession> + <Hit_len>590</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>437.187</Hsp_bit-score> + <Hsp_score>1123</Hsp_score> + <Hsp_evalue>2.03785e-142</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>590</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>264</Hsp_identity> + <Hsp_positive>371</Hsp_positive> + <Hsp_gaps>41</Hsp_gaps> + <Hsp_align-len>602</Hsp_align-len> + <Hsp_qseq>KSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVDNVAEGTELAAEASERTTESIKTLTGV----ASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFP-PVPQEP--ENNKKDQKKD--DKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFM-------SNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGII----DKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTP--KPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNN----SKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>KPQEMQTMRR-KVISDNKPTQEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVESAVSDTTAGSELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTA--GIQQTGTSLATVESAIPVKVVEDDTAESVG---PLLPAPEAVNNDPDADFFPTPQPVEPKQESPEEKQKKEAFNLKLSQALDKLTKTVDFGFKKSISITDKISSMLFKYTVSAAIEAAKMTAMILAVVVGIDLLMIHFKYWSDKFSKAWDLFSTDFTKFSSETGTWGPLLQSIFDSIDKIKQLWEAGDWGGLTVAIVEGLGKVLFNLGELIQLGMAKLSAAILRVIPGMKDTADEVEGRALENFQNSTGASLNKEDQEKVANYQDKRMNGDLGPIAEGLDKISNWKTRASNWIRGVDNKEALTTDEERAAEEEKLKQLSPEERKNALMKANEARAAMIRFEKYADSADMSKDSTVKSVEAAYEDLKKRMDDPDLNNSPAVKKELAARFSKIDATYQELKK-NQPNAKPETSAKSPEAKQVQVIEK-------NKAQQAPVQQASPSINNTNNVIKKNTVVHNMTPVTSTTAPGVFDATGVN</Hsp_hseq> + <Hsp_midline>K + M TMRR KVI+D+K ++AA +AS+ + L I KLDD Q+A+EL+A+ +EEK N +I ++DNV SE E+++ + ++ KL KL S+LE K+Q +Q++G S +T S I K+ + D ES G +LP + NN PD DFFP P P EP E+ ++ QKK+ + K + L L KT GFK +ISITDKISSMLFKYTV+A EAAKM AM+ A+V+GIDLL IHFKYW+DKF ++F +FS+E G WG LLQSIF + IK+ WEAGDW GL VAIV+GL V++NL E++ LG++K+SA+IL + G ++ A + G ALE FQ TG SL+++DQ+ +A YQ KR+ G I DK +KTRA +W+ G +NK T +R E + LK ++PE+R+ L+K NEARAA+ R EKY D + ++S+E AY KK + D +++ PA KKEL RF ++++ YQ+LK+ N P KP A S + ++VQ I+K +K + A+ +NN NN + +H + VT+T APGVF ATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>15</Hit_num> + <Hit_id>gi|330858710|ref|YP_004415085.1|</Hit_id> + <Hit_def>putative baseplate hub subunit and tail length determinator [Shigella phage Shfl2] >gi|327397644|gb|AEA73146.1| putative baseplate hub subunit and tail length determinator [Shigella phage Shfl2]</Hit_def> + <Hit_accession>YP_004415085</Hit_accession> + <Hit_len>590</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>424.091</Hsp_bit-score> + <Hsp_score>1089</Hsp_score> + <Hsp_evalue>1.93327e-137</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>590</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>261</Hsp_identity> + <Hsp_positive>368</Hsp_positive> + <Hsp_gaps>33</Hsp_gaps> + <Hsp_align-len>598</Hsp_align-len> + <Hsp_qseq>KSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVDNVAEGTELAAEASERTTESIKTLTGV----ASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFP-PVPQEP--ENNKKDQKKD--DKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFM-------SNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGII----DKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTP--KPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>KPQEMQTMRR-KVISDNKPTQEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVESAVSDTTAGSELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTA--GIQQTGTSLATVESAIPVKVVEDDTAESVG---PLLPAPEAVNNDPDADFFPTPQPVEPKQESPEEKQKKEAFNLKLSQALDKLTKTVDFGFKKSISITDKISSMLFKYTVSAAIEAAKMTAMILAVVVGIDLLMVHFKYWSDKFSKAWDLFNTDFTKFSSETGTWGPLLQSIFDSIDKIKQLWEAGDWGGLTAAIVEGLGSVLFNLGELIQLGMAKLSAAILRVIPGMKDTADEVEGRALENFQNTTGASLNKEDQEKVANYQDKRMNGDLGPIAKGLDKIANWKTRASNWIRGVDNKEALTTDEERAAEEEKLKQLSPEERKNALMKANEARAAMIRFEKYADSADMSKDSTVKSVEAAYEDLKKRMDDPDLNNSPAVKKELAARFSKIDATYQELKK-NQPNAKPETSAKSPEAKQVQVIEK--NKAQQAPVQQASPSINNTNNVVKKNTVV-HNMTPVTSTTAPGVFDATGVN</Hsp_hseq> + <Hsp_midline>K + M TMRR KVI+D+K ++AA +AS+ + L I KLDD Q+A+EL+A+ +EEK N +I ++DNV SE E+++ + ++ KL KL S+LE K+Q +Q++G S +T S I K+ + D ES G +LP + NN PD DFFP P P EP E+ ++ QKK+ + K + L L KT GFK +ISITDKISSMLFKYTV+A EAAKM AM+ A+V+GIDLL +HFKYW+DKF ++F +FS+E G WG LLQSIF + IK+ WEAGDW GL AIV+GL V++NL E++ LG++K+SA+IL + G ++ A + G ALE FQ TG SL+++DQ+ +A YQ KR+ G I DK +KTRA +W+ G +NK T +R E + LK ++PE+R+ L+K NEARAA+ R EKY D + ++S+E AY KK + D +++ PA KKEL RF ++++ YQ+LK+ N P KP A S + ++VQ I+K N +Q+ ++ NT N+ H + VT+T APGVF ATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>16</Hit_num> + <Hit_id>gi|397134209|gb|AFO10716.1|</Hit_id> + <Hit_def>baseplate hub protein [Escherichia phage ECML-134]</Hit_def> + <Hit_accession>AFO10716</Hit_accession> + <Hit_len>590</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>421.009</Hsp_bit-score> + <Hsp_score>1081</Hsp_score> + <Hsp_evalue>3.75934e-136</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>590</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>263</Hsp_identity> + <Hsp_positive>373</Hsp_positive> + <Hsp_gaps>41</Hsp_gaps> + <Hsp_align-len>602</Hsp_align-len> + <Hsp_qseq>KSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVDNVAEGTELAAEASERTTESIKTLTGV----ASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFP-PVPQEP--ENNKKDQKKD--DKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFM-------SNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGII----DKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTP--KPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNN----SKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>KPQEMQTMRR-KVISDNKPTQEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIVGAIDNVESAVSDTTAGSELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTA--GIQQTGTSLATVESAIPVKVVEDDTAESVG---PLLPAPEAVNNDPDADFFPTPQPVEPKQESPEEKQKKEAFNLKLSQALDKLTKTVDFGFKKSISISDKISSMLFKYTISAAIEAAKMTAMILAVVVGIDLLMVHFKYWSDKFSKAWDLFNTDFTKFSSETGTWGPLLQSIFSSIDEIKKFWEAGDWGGLTVAIVEGLGKVLYNLGELIQLGMAKLSAAILRVIPGMKDTADEVEGRALENFQNSTGASLSKEDQEKVANYQDKRMNGDLGPIAEGLDKIANWKTRASNWIRGVDNKEALTTDEERAAEEEKLKQLSPEERKNALMKANEARAAMIRFEQYADSADMSKDSTVKSVEAAYEDLKKRMDDPDLNNSPAVKKELAARFSKIDATYQELKK-NQPNAKPETSAKSPEAKQVQVIEK-------NKAQQAPVQQASPSINNTNNVIKKNTVVHNMTPVTSTTAPGVFDATGVN</Hsp_hseq> + <Hsp_midline>K + M TMRR KVI+D+K ++AA +AS+ + L I KLDD Q+A+EL+A+ +EEK N ++ ++DNV SE E+++ + ++ KL KL S+LE K+Q +Q++G S +T S I K+ + D ES G +LP + NN PD DFFP P P EP E+ ++ QKK+ + K + L L KT GFK +ISI+DKISSMLFKYT++A EAAKM AM+ A+V+GIDLL +HFKYW+DKF ++F +FS+E G WG LLQSIF + +IKKFWEAGDW GL VAIV+GL V+YNL E++ LG++K+SA+IL + G ++ A + G ALE FQ TG SLS++DQ+ +A YQ KR+ G I DK +KTRA +W+ G +NK T +R E + LK ++PE+R+ L+K NEARAA+ R E+Y D + ++S+E AY KK + D +++ PA KKEL RF ++++ YQ+LK+ N P KP A S + ++VQ I+K +K + A+ +NN NN + +H + VT+T APGVF ATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>17</Hit_num> + <Hit_id>gi|116326412|ref|YP_803132.1|</Hit_id> + <Hit_def>base plate hub [Enterobacteria phage RB32] >gi|115344005|gb|ABI95014.1| base plate hub [Enterobacteria phage RB32]</Hit_def> + <Hit_accession>YP_803132</Hit_accession> + <Hit_len>590</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>407.527</Hsp_bit-score> + <Hsp_score>1046</Hsp_score> + <Hsp_evalue>5.49342e-131</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>590</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>261</Hsp_identity> + <Hsp_positive>372</Hsp_positive> + <Hsp_gaps>41</Hsp_gaps> + <Hsp_align-len>602</Hsp_align-len> + <Hsp_qseq>KSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVDNVAEGTELAAEASERTTESIKTLTGV----ASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFP-PVPQEP--ENNKKDQKKD--DKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFM-------SNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGII----DKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTP--KPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNN----SKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>KPQEMQTMRR-KVISDNKPTQEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVESAVSDTTAGSELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTA--GIQQTGTSLATVESAIPVKVVEDDTAESVG---PLLPAPEAVNNDPDADFFPAPQPVEPKQESPEEKQKKEAFNLKLSQALDKLTKTVDFGFKKSISISDKISSMLFKYTISAAIEAAKMTAMILAVVVGIDLLMVHFKYWSDKFSKAWDLFNTDFTKFSSETGTWGPLLQSIFDSIDEIKKFWEAGDWGGLTVAIVEGLGKVLYNLGELIQLGMAKLSAAILRVIPGMKDTADEVEGRALENFQNTTNASLSKEDQEKVANYQYKRMNGDLGPIAKGLDKIANWKTRASNWIRGVDNKEALTTDEERAEEEEKLKQLSPEEAKIALMKANEARAAMNRFDQYADSADMSKDSTVKSVEAAYEDLKKRMDDPDLNNSPAVKKELAARFSKIDATYQELKK-NQPNAKPETSAKSPEAKQVQVIEK-------NKAQQAPVQQASPSINNTNNVIKKNTVVHNMTPVTSTTAPGVFDATGVN</Hsp_hseq> + <Hsp_midline>K + M TMRR KVI+D+K ++AA +AS+ + L I KLDD Q+A+EL+A+ +EEK N +I ++DNV SE E+++ + ++ KL KL S+LE K+Q +Q++G S +T S I K+ + D ES G +LP + NN PD DFFP P P EP E+ ++ QKK+ + K + L L KT GFK +ISI+DKISSMLFKYT++A EAAKM AM+ A+V+GIDLL +HFKYW+DKF ++F +FS+E G WG LLQSIF + +IKKFWEAGDW GL VAIV+GL V+YNL E++ LG++K+SA+IL + G ++ A + G ALE FQ T SLS++DQ+ +A YQ KR+ G I DK +KTRA +W+ G +NK T +R +E + LK ++PE+ + L+K NEARAA+ R ++Y D + ++S+E AY KK + D +++ PA KKEL RF ++++ YQ+LK+ N P KP A S + ++VQ I+K +K + A+ +NN NN + +H + VT+T APGVF ATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>18</Hit_num> + <Hit_id>gi|639438842|ref|YP_009030799.1|</Hit_id> + <Hit_def>baseplate hub subunit tail length determinator [Escherichia phage e11/2] >gi|628971670|gb|AHY83392.1| baseplate hub subunit tail length determinator [Escherichia phage e11/2]</Hit_def> + <Hit_accession>YP_009030799</Hit_accession> + <Hit_len>590</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>399.823</Hsp_bit-score> + <Hsp_score>1026</Hsp_score> + <Hsp_evalue>4.84152e-128</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>590</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>255</Hsp_identity> + <Hsp_positive>369</Hsp_positive> + <Hsp_gaps>41</Hsp_gaps> + <Hsp_align-len>602</Hsp_align-len> + <Hsp_qseq>KSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVDNVAEGTELAAEASERTTESIKTLTGV----ASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFP-PVPQEP--ENNKKDQKKD--DKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFM-------SNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGII----DKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTP--KPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNN----SKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>KPQEMQTMRR-KVISDNKPTQEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIVGAIGNVESAVSDTTAGSELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTA--GIQQTGTSLATVESAIPVKVVEDDTAESVG---PLLPAPEAVNNDPDADFFPTPQPVEPKQESPEEKQKKEAFNLKLSQALDKLTKTVDFGFKKSISISDKISSMLFKYTISAAIEAAKMTAMILAVVVGIDLLMVHFKYWSDKFSKAWDLFNTDFTKFSSETGTWGPLLQSIFSSIDKIQQFWEKGDWGGLTAAIIEGLGSVLFNLGELIQLGMAKLSAAILRVIPGMKDTADEVEGRALENFQNTTGASLNKEDQEKVANYQYKRMNGDLGPIAKGLDKIANWKTRASNWIRGVDNKEALTSDEERAEEEEKLKQLSPEEAKIALMKANEARAAMNRFEKYADSADMSKDSTVKSVESAYEDLKKRMDDPDLNNSPAVKKELAARFSKIDATYQELKK-NQPNAKPETSAKSPEAKQVQVIEK-------NKAQQAPVQQASPSINNTNNVIKKNTVVHNMTPVTSTTAPGVFDATGVN</Hsp_hseq> + <Hsp_midline>K + M TMRR KVI+D+K ++AA +AS+ + L I KLDD Q+A+EL+A+ +EEK N ++ ++ NV SE E+++ + ++ KL KL S+LE K+Q +Q++G S +T S I K+ + D ES G +LP + NN PD DFFP P P EP E+ ++ QKK+ + K + L L KT GFK +ISI+DKISSMLFKYT++A EAAKM AM+ A+V+GIDLL +HFKYW+DKF ++F +FS+E G WG LLQSIF + I++FWE GDW GL AI++GL V++NL E++ LG++K+SA+IL + G ++ A + G ALE FQ TG SL+++DQ+ +A YQ KR+ G I DK +KTRA +W+ G +NK T +R +E + LK ++PE+ + L+K NEARAA+ R EKY D + ++S+E AY KK + D +++ PA KKEL RF ++++ YQ+LK+ N P KP A S + ++VQ I+K +K + A+ +NN NN + +H + VT+T APGVF ATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>19</Hit_num> + <Hit_id>gi|398313740|emb|CCI89087.1|</Hit_id> + <Hit_def>phage baseplate hub [Yersinia phage phiD1]</Hit_def> + <Hit_accession>CCI89087</Hit_accession> + <Hit_len>369</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>308.531</Hsp_bit-score> + <Hsp_score>789</Hsp_score> + <Hsp_evalue>1.22596e-95</Hsp_evalue> + <Hsp_query-from>218</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>369</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>169</Hsp_identity> + <Hsp_positive>239</Hsp_positive> + <Hsp_gaps>26</Hsp_gaps> + <Hsp_align-len>377</Hsp_align-len> + <Hsp_qseq>MLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFM-------SNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGII----DKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTP--KPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNN----SKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>MLFKYTISAAIEAAKMTAMILAVVIGIDLLMVHFKYWSDKFSKAWDLFNTDFTKFSSETGTWGPLLQSIFDSIDKIKQLWEAGDWGGLTAAIVEGLGSVLFNLGELIQLGMAKLSAAILRVIPGMKDTADEVEGRALENFQNSTGASLNKEDQEKVANYQDKRMNGDLGPIAKGLDKIANWKTRASNWIRGVDNKEALTTDEERAAEEEKLKQLSPEERKNALMKANEARAAMIRFEKYADSADMSKDSTVKSVEAAYEDLKKRMDDPDLNNSPAVKKELAARFSKIDATYQELKK-NQPNAKPETSAKSPEAKQVQVIEK-------NKAQQAPVQQASPSINNTNNVIKKNTVVHNMTPVTSTTAPGVFDATGVN</Hsp_hseq> + <Hsp_midline>MLFKYT++A EAAKM AM+ A+V+GIDLL +HFKYW+DKF ++F +FS+E G WG LLQSIF + IK+ WEAGDW GL AIV+GL V++NL E++ LG++K+SA+IL + G ++ A + G ALE FQ TG SL+++DQ+ +A YQ KR+ G I DK +KTRA +W+ G +NK T +R E + LK ++PE+R+ L+K NEARAA+ R EKY D + ++S+E AY KK + D +++ PA KKEL RF ++++ YQ+LK+ N P KP A S + ++VQ I+K +K + A+ +NN NN + +H + VT+T APGVF ATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>20</Hit_num> + <Hit_id>gi|431809132|ref|YP_007236029.1|</Hit_id> + <Hit_def>phage baseplate hub [Yersinia phage phiR1-RT] >gi|398313421|emb|CCI88770.1| phage baseplate hub [Yersinia phage phiR1-RT]</Hit_def> + <Hit_accession>YP_007236029</Hit_accession> + <Hit_len>582</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>298.516</Hsp_bit-score> + <Hsp_score>763</Hsp_score> + <Hsp_evalue>2.81533e-89</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>582</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>217</Hsp_identity> + <Hsp_positive>334</Hsp_positive> + <Hsp_gaps>46</Hsp_gaps> + <Hsp_align-len>602</Hsp_align-len> + <Hsp_qseq>MKSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLID-------SVDNVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDE---PE---SPGLPERILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKDDKKPT--DMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRI--EEGPGIIDKAGEFKTRAFDWVL--GRENKIDSTQASDRDQ--ETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKY--QKLKEDNTPKPAAPATSEDNQRVQNIQK-AENAKEQSKKSTGDMNVANT--QVNNVNNSKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>MKQPSQQNSFRRKVIEDSKPERDAASAANSQSTSLDSIDSKLSDVQAASELTSEVVEAKTDQLIDTIGQLKGSVQDVQAASELAVDAIGDSNSYLKSIDTVSQAINAKLAQLTSMLEAKFG--DQLAPLNAPNPVSG------ALPEPVPVVLPEDFIGPMLP--TVPDTDPNEEVLPEPPRREPEPKSEEDKKSSSEGDEKNTISEKLDLLIRTTQSGFKTAVGYSDKISNMLFKFTLTAIAQAAKTAAMILGIILAIDVIKANFTFWAEKFSTNFTEFAERAKEWGPLIESVVGMVRNISDAWNSDDPLGIIKAIAFGLSDITKQLADLLGLAVAKLTAGILRALGFNDKADALEGSYLKGYQDRTGSVMSEGHQKLIAKADNQKIKDEHDTTAYDQFKGMDQRGYDQAYKNGSMSK-DTYEALSKGEAKASDPLQGLSEEERLNVIIKRNEAQAAINRTKDYSTKIDPNNEREVNSLNKALADIKSRLDDPEISKIPESKSDLTRQFNELNNKTSANKLK---------PAPIAENQEVQTTKRVAELQKQNDTQSVNKGPTQNTVVQANTTNTSRTMYNMPPTTNIPAPGMRAALGTN</Hsp_hseq> + <Hsp_midline>MK + RRKVI DSK ERDAAS A+ Q SL+ I KL DVQ+A+EL +EV+E K + LID SV +V +ELA +A + +K++ V+ I+ KL++L SMLE+K +Q + + +G LP+P PE P LP +P D N + E + E +KK + D+K T + L L++TT+ GFK + +DKIS+MLFK+T+TA+A+AAK AAM+ ++L ID+++ +F +W +KF +NF EF+ A EWG L++S+ GM+ +I W + D G+ AI GL+D+ L++++ L ++K++A IL ALGF + A + GS L+G+Q+RTG+ +SE QK +AK +++I E D+ R +D G +K D+ +A + + + L+ ++ E+R +IK+NEA+AA+ R + Y +DP N + SL KA K + D IS P +K +L ++F + +K KLK PA +NQ VQ ++ AE K+ +S NT Q N N S+T++ + T PAPG+ A G N</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>21</Hit_num> + <Hit_id>gi|422934216|ref|YP_007004252.1|</Hit_id> + <Hit_def>baseplate hub subunit [Enterobacteria phage Bp7] >gi|345450725|gb|AEN93928.1| baseplate hub subunit [Enterobacteria phage Bp7]</Hit_def> + <Hit_accession>YP_007004252</Hit_accession> + <Hit_len>578</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>269.24</Hsp_bit-score> + <Hsp_score>687</Hsp_score> + <Hsp_evalue>3.573e-78</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>578</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>204</Hsp_identity> + <Hsp_positive>331</Hsp_positive> + <Hsp_gaps>54</Hsp_gaps> + <Hsp_align-len>604</Hsp_align-len> + <Hsp_qseq>MKSE-NMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVD-------NVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLP---ERILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKDDKKP-TDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEG--------------PGIIDKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKK-ELDKRFQRVESKYQKLKEDNTPKPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>MKNESNQNSFRRNKLIEEMAPQRRAEALAQTQNDELGNISDVLSDSQAASELLSEVVETKSNQIISSVDRVDKSVQDVVAGTELTAEAISEQTQQSKALS---DALNEKINKLSNMLEAKFSGI--SIPPEGSS----LKVIEDSIPEEPKAETPKVPAVVEDILPPED---NKPDAEFMP----EPPKNSDEGKEGDKTSLSDKIEALTKITEKGFKASIGVADRISGMLFKYTITAAAEAAKLAAGLVLLIFGIDAIRVYFQYFMDQFESGWKEFNDKFKEWGPLLEGLMTWAKNAEAMFSEGNWLGLAEAIIRGMVNLTKNMAQLLMLGISKLISAILSKIPGMGELAENVEASALMSYQQNTGATLDVEDQTKVAKYHDRRSAEALETAEKMNKKYKDKPELINQAEKYGN------LTKE-QADQLRAGGIDTSFRDLPE---EERLEYFKKRDKAQADIIRLTQTADNIMKPDSKDIENAKAFKADIEKQLADPIMAKGGAPKDLNIQQLLDKMNKSLEKFNEAEKPKPASVAESPENTQVKKVDEQMRAKENAKYSQQAPTQINQQTNIKKTSKTSYNLPPQSSTPAPGMRQATKVN</Hsp_hseq> + <Hsp_midline>MK+E N ++ RR K+I + +R A + A Q D L I L D Q+A+EL++EV+E K N +I SVD +V GTEL AEA T+ K L+ +++K++KL++MLE+K + + G+S L VIED +P+ + E+P +P E ILPP D N PD +F P EP N + K+ DK +D + L K T+ GFKA+I + D+IS MLFKYT+TA AEAAK+AA L L+ GID +R++F+Y+ D+F S + EF+ + EWG LL+ + + + + G+W GLA AI++G+ ++ N+++++ LGISK+ ++IL + G A + SAL +Q+ TG +L +DQ +AKY +R E P +I++A ++ L +E + D +A D ++L E+R E K+++A+A + RL + ++ + ++++ + +K ++D ++ A K + + ++ +K E PKPA+ A S +N +V+ + + AKE +K S N Q N SKT + + ++TPAPG+ AT VN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>22</Hit_num> + <Hit_id>gi|314121771|ref|YP_004063890.1|</Hit_id> + <Hit_def>gp29 baseplate hub subunit tail length determinator [Enterobacteria phage vB_EcoM-VR7] >gi|313151528|gb|ADR32584.1| gp29 baseplate hub subunit tail length determinator [Enterobacteria phage vB_EcoM-VR7]</Hit_def> + <Hit_accession>YP_004063890</Hit_accession> + <Hit_len>581</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>269.24</Hsp_bit-score> + <Hsp_score>687</Hsp_score> + <Hsp_evalue>3.63307e-78</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>581</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>186</Hsp_identity> + <Hsp_positive>328</Hsp_positive> + <Hsp_gaps>58</Hsp_gaps> + <Hsp_align-len>606</Hsp_align-len> + <Hsp_qseq>KSENMSTMRR----RKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVD-------NVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKDDKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEG--------------PGIIDKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKK-ELDKRFQRVESKYQKLKEDNTPKPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNN----SKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>KNSEQTSFRRGGPNKKLIEELAPQRRAEALSAEQNDELSNLNTTLTNTQAATELVSEAIEDKGNQIIENIQTNNGVLQDISAGVELTAEATEKTQQGIKNLTDI---LSDKLDKLSAMISGKIGVT------SPVAGSESLKPVEDALPEPEENKPTASVPALIPPEEQK---PDADFIPE-PEQPKTDAEGKETNTWSLGDKLDTLSKITEKGFKASISVADRISGMLFKYTITAAAEAAKLIGGLLLLVFGIDAIRVYFQYFMKQFEKGWAEFNDKFKEWGPLLEGLMTWAKNAEAMFSERNWLGLAEAIIRGMVNLTKNMAQLLMLGISKLISAILSKIPGMGDLADNVEASALMSYQQNTGATLDDEDQTKIAKYHDKRSAEAMKTAEKMNKKYKDKPELINQAEKYGN------LTKE-QADQLRAGGIDTSFRDLPE---EERLDYFKKRDKTQADIIRLTQTADNLMKPDATDKKNAEASYKAIQEQLADPVMAKGGAPKDLNMHALLEKLDKSLEKFKDEPKVKPPDVKASPDAQQAAKVDEGMKAKENKYKDAP----ANAQINTVNNIQKTSRTQYNMPPQSSTPAPGMRQATRIN</Hsp_hseq> + <Hsp_midline>K+ ++ RR +K+I + +R A + +++Q D L + L + Q+A ELV+E IE+KGN +I+++ +++ G EL AEA+E+T + IK LT + +SDKL KL++M+ K+ S + S L +ED LP+P+E + ++PP + PD DF P P++P+ + + ++ + D L L K T+ GFKA+IS+ D+IS MLFKYT+TA AEAAK+ L LV GID +R++F+Y+ +F + EF+ + EWG LL+ + + + + +W GLA AI++G+ ++ N+++++ LGISK+ ++IL + G + A + SAL +Q+ TG +L ++DQ +AKY KR E P +I++A ++ L +E + D +A D ++L E+R + K+++ +A + RL + ++ + T+ ++ E +Y + ++ ++D ++ A K + ++++ +K K++ KP S D Q+ + + AKE K AN Q+N VNN S+T + + ++TPAPG+ AT +N</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>23</Hit_num> + <Hit_id>gi|299779140|ref|YP_003734334.1|</Hit_id> + <Hit_def>29 gene product [Enterobacteria phage IME08] >gi|298105869|gb|ADI55513.1| gp29 baseplate hub subunit [Enterobacteria phage IME08]</Hit_def> + <Hit_accession>YP_003734334</Hit_accession> + <Hit_len>578</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>266.929</Hsp_bit-score> + <Hsp_score>681</Hsp_score> + <Hsp_evalue>2.99001e-77</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>578</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>203</Hsp_identity> + <Hsp_positive>335</Hsp_positive> + <Hsp_gaps>56</Hsp_gaps> + <Hsp_align-len>605</Hsp_align-len> + <Hsp_qseq>MKSE-NMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVD-------NVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLP---ERILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKDDKKP-TDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEG--------------PGIIDKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNS-AKKSISDSAISDQPATKK-ELDKRFQRVESKYQKLKEDNTPKPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>MKNESNQNSFRRNKLIEEMAPQRRAEALAQTQNDELGNISDVLSDSQAASELLSEVVETKSNQIISSVDRVDKSVQDVVAGTELTAEAISEQTQQSKALS---DALNEKINKLSNMLEAKFSGI--SIPPEGSS----LKVIEDSIPEEPKAETPKVPAVVEDILPPED---NKPDAEFVP----EPPKNSDEGKEGAKSPLSEKIEALTKITEKGFKASVGVADRISGMLFKYTITAAAEAAKLAAGLVLLIFGIDAIRVYFQYFMDQFEAGWKEFNDKFKEWGPLLEGLMTWAKNAEAMFSEGNWLGLAEAIIRGMVNLTKNMAQLLMVGISKLISAILSKIPGMGELAENVEASALMSYQQNTGATLDDEDQTKVAKYHDRRSAEALETAEKMNKKYKNKPELINQAEKYGN------LTKE-QADQLRAGGIDTSFRDLPE---EERLEYFKKRDKAQADIIRLTQTADNIMKPDSKDIENA-KAYKADIEKQLADPIMAKGGAPKDLNIQQLLDKMNKSLEKFNEAEKPKPASVAESPENTQVKKVDEQMRAKENAKYSQQAPTQINQQTNIKKTSKTSYNLPPQSSTPAPGMRQATKVN</Hsp_hseq> + <Hsp_midline>MK+E N ++ RR K+I + +R A + A Q D L I L D Q+A+EL++EV+E K N +I SVD +V GTEL AEA T+ K L+ +++K++KL++MLE+K + + G+S L VIED +P+ + E+P +P E ILPP D N PD +F P EP N + K+ K P ++ + L K T+ GFKA++ + D+IS MLFKYT+TA AEAAK+AA L L+ GID +R++F+Y+ D+F + + EF+ + EWG LL+ + + + + G+W GLA AI++G+ ++ N+++++ +GISK+ ++IL + G A + SAL +Q+ TG +L ++DQ +AKY +R E P +I++A ++ L +E + D +A D ++L E+R E K+++A+A + RL + ++ + ++++ KAY + +K ++D ++ A K + + ++ +K E PKPA+ A S +N +V+ + + AKE +K S N Q N SKT + + ++TPAPG+ AT VN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>24</Hit_num> + <Hit_id>gi|308814556|ref|YP_003934830.1|</Hit_id> + <Hit_def>baseplate hub subunit tail length determinator [Shigella phage SP18] >gi|308206148|gb|ADO19547.1| baseplate hub subunit tail length determinator [Shigella phage SP18]</Hit_def> + <Hit_accession>YP_003934830</Hit_accession> + <Hit_len>581</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>265.388</Hsp_bit-score> + <Hsp_score>677</Hsp_score> + <Hsp_evalue>1.10381e-76</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>581</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>188</Hsp_identity> + <Hsp_positive>331</Hsp_positive> + <Hsp_gaps>60</Hsp_gaps> + <Hsp_align-len>607</Hsp_align-len> + <Hsp_qseq>KSENMSTMRR----RKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVD-------NVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKDDKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEG--------------PGIIDKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKR--FQRVESKYQKLKEDNTPKPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNN----SKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>KNSEQTSFRRGGPNKKLIEELAPQRRAEALSAEQNDELSNLNTTLTNTQAATELVSEAIEDKGNQIIENIQTNNGVLQDISAGVELTAEATEKTQQGIKNLTDI---LSDKLDKLSAMISGKLGVT------SPVAGSESLKPVEDALPEPEENKPTASVPTLIPPEEQK---PDADFIPE-PEQPKTDAEGKETNTWSLGDKLDTLSKITEKGFKASISVADRISGMLFKYTITAAAEAAKLIGGLLLLVFGIDAIRVYFQYFMKQFEKGWAEFNDKFKEWGPLLEGLMTWAKNAQAMFSEKNWLGLAEAIIRGMVNLTKNMAQLLMLGISKLISAILSKIPGMGDLADNVEASALMSYQQNTGATLDDEDQTKIAKYHDKRSAEAMEATEKMNKKYKDKPELINQAEKYGN------LTKE-QADQLRAGGIDTSFRDLPE---EERLDYFKKRDKAQADIIRLTQTADNLMKPDATDKKNAMEMRANIEKQLADPSMAKGGAP-KDLNMRALLEKLDKSLEKFKDEPKVKPPDVKTSPDAQQAAKVDEGMKAKENKYKDAP----AQAQINTVNNIQKTSRTQYNMPPQSSTPAPGMRQATRIN</Hsp_hseq> + <Hsp_midline>K+ ++ RR +K+I + +R A + +++Q D L + L + Q+A ELV+E IE+KGN +I+++ +++ G EL AEA+E+T + IK LT + +SDKL KL++M+ K+ S + S L +ED LP+P+E + ++PP + PD DF P P++P+ + + ++ + D L L K T+ GFKA+IS+ D+IS MLFKYT+TA AEAAK+ L LV GID +R++F+Y+ +F + EF+ + EWG LL+ + + + + +W GLA AI++G+ ++ N+++++ LGISK+ ++IL + G + A + SAL +Q+ TG +L ++DQ +AKY KR E P +I++A ++ L +E + D +A D ++L E+R + K+++A+A + RL + ++ + T+ ++ + + +K ++D +++ A K+L+ R ++++ +K K++ KP TS D Q+ + + AKE K A Q+N VNN S+T + + ++TPAPG+ AT +N</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>25</Hit_num> + <Hit_id>gi|238695345|ref|YP_002922538.1|</Hit_id> + <Hit_def>gp29 baseplate hub subunit, tail length determinator [Enterobacteria phage JS10] >gi|220029481|gb|ACL78415.1| gp29 baseplate hub subunit, tail length determinator [Enterobacteria phage JS10]</Hit_def> + <Hit_accession>YP_002922538</Hit_accession> + <Hit_len>578</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>262.692</Hsp_bit-score> + <Hsp_score>670</Hsp_score> + <Hsp_evalue>1.03696e-75</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>578</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>198</Hsp_identity> + <Hsp_positive>334</Hsp_positive> + <Hsp_gaps>52</Hsp_gaps> + <Hsp_align-len>603</Hsp_align-len> + <Hsp_qseq>MKSE-NMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVD-------NVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLP---ERILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKDDKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEG--------------PGIIDKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKK-ELDKRFQRVESKYQKLKEDNTPKPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>MKNESNQNSFRRNKLIEEMAPQRRAEALAQTQNDELGNITEALSETQAASELLSEVVETKSNQIINSIDRVDKSVQDVVAGTELTAEAISEQTQQSKALS---DALNEKINKLSNMLEAKFSGI--SIPPEGSS----LKVIEDSIPEEPKAETPKVPAVIEDILPPED---NKPDAEF---VPEPPKNSDEGKEGDKSSLSDKIEALTKITEKGFKASIGVADRISGMLFKYTITAAAEAAKLAAGLALLIFGIDAIRVYFQYFMDQFNEGWKKFNDKFKEWGPLLEGLMTWAKNAEAMFSERNWLGLAEAIIRGMVNLTKNMAQLLMLGISKLISAILSKIPGMGDLAENVEASALMSYQQNTGATLDDEDQTKVAKYHDRRSAEALETAEKMNKKYKGKPELINQAEKYGN------LTKE-QADQLRAGGIDTSFRNLPE---EERLEYFKKRDKAQADIIRLTQTADNIMKPDSKDIENAKAFKADIEKQLADPIMAKGGAPKDLNIQQLLDKMNKSLEKFNEAEKPKPASVAESPENTQVKKVDEQMRAKENAKYSQQAPTQINQQTNIKKTSKTSYNLPPQSSTPAPGMRQATKVN</Hsp_hseq> + <Hsp_midline>MK+E N ++ RR K+I + +R A + A Q D L I L + Q+A+EL++EV+E K N +I+S+D +V GTEL AEA T+ K L+ +++K++KL++MLE+K + + G+S L VIED +P+ + E+P +P E ILPP D N PD +F VP+ P+N+ + ++ D +D + L K T+ GFKA+I + D+IS MLFKYT+TA AEAAK+AA L L+ GID +R++F+Y+ D+F + +F+ + EWG LL+ + + + + +W GLA AI++G+ ++ N+++++ LGISK+ ++IL + G + A + SAL +Q+ TG +L ++DQ +AKY +R E P +I++A ++ L +E + D +A D +NL E+R E K+++A+A + RL + ++ + ++++ + +K ++D ++ A K + + ++ +K E PKPA+ A S +N +V+ + + AKE +K S N Q N SKT + + ++TPAPG+ AT VN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>26</Hit_num> + <Hit_id>gi|161622623|ref|YP_001595318.1|</Hit_id> + <Hit_def>gp29 baseplate hub subunit tail length determinator [Enterobacteria phage JS98] >gi|52139948|gb|AAU29318.1| gp29 baseplate hub subunit tail length determinator [Enterobacteria phage JS98]</Hit_def> + <Hit_accession>YP_001595318</Hit_accession> + <Hit_len>578</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>259.225</Hsp_bit-score> + <Hsp_score>661</Hsp_score> + <Hsp_evalue>1.72858e-74</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>578</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>196</Hsp_identity> + <Hsp_positive>334</Hsp_positive> + <Hsp_gaps>52</Hsp_gaps> + <Hsp_align-len>603</Hsp_align-len> + <Hsp_qseq>MKSE-NMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVD-------NVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLP---ERILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKDDKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEG--------------PGIIDKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKK-ELDKRFQRVESKYQKLKEDNTPKPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>MKNESNQNSFRRNKLIEEMAPQRRAEALAQTQNDELGNITEALSETQAASELLSEVVETKSNQIINSIDRVDKSVQDVVAGTELTAEAISEQTQQSKALS---DALNEKINKLSNMLEAKFSGI--SIPPEGSS----LKVIEDSIPEEPKAETPKVPAVIEDILPPED---NKPDAEF---VPEPPKNSDEGKEGDKSSLSDKIEALTKITEKGFKASIGVADRISGMLFKYTITAAAEAAKLAAGLALLIFGIDAIRVYFQYFMDQFNEGWKKFNDKFKEWGPVLEGLMTWAKNAEAMFSERNWLGLAEAIIRGMVNLTKNMAQLLMLGISKLISAILSKIPGMGDLAENVEASALMSYQQNTGATLDDEDQTKVAKYHDRRSAEALETAEKMNKKYKGKPELINQAEKYGN------LTKE-QADQLRAGGIDTSFRDLPE---EERLEYFKKRDKAQADIIRLTQTADNIMKPDSKDIENAKAFKADIEKQLADPIMAKGGAPKDLNIQQLLDKMNKSLEKFNEAEKPKPASVAESPENTQVKKVDEQMRAKENAKYSQQAPTQINQQTNIKKTSKTSYNLPPQSSTPAPGMRQATKVN</Hsp_hseq> + <Hsp_midline>MK+E N ++ RR K+I + +R A + A Q D L I L + Q+A+EL++EV+E K N +I+S+D +V GTEL AEA T+ K L+ +++K++KL++MLE+K + + G+S L VIED +P+ + E+P +P E ILPP D N PD +F VP+ P+N+ + ++ D +D + L K T+ GFKA+I + D+IS MLFKYT+TA AEAAK+AA L L+ GID +R++F+Y+ D+F + +F+ + EWG +L+ + + + + +W GLA AI++G+ ++ N+++++ LGISK+ ++IL + G + A + SAL +Q+ TG +L ++DQ +AKY +R E P +I++A ++ L +E + D +A D ++L E+R E K+++A+A + RL + ++ + ++++ + +K ++D ++ A K + + ++ +K E PKPA+ A S +N +V+ + + AKE +K S N Q N SKT + + ++TPAPG+ AT VN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>27</Hit_num> + <Hit_id>gi|311992691|ref|YP_004009559.1|</Hit_id> + <Hit_def>gp29 baseplate hub subunit [Acinetobacter phage Ac42] >gi|298684474|gb|ADI96435.1| gp29 baseplate hub subunit [Acinetobacter phage Ac42]</Hit_def> + <Hit_accession>YP_004009559</Hit_accession> + <Hit_len>569</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>227.639</Hsp_bit-score> + <Hsp_score>579</Hsp_score> + <Hsp_evalue>7.65187e-63</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>569</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>183</Hsp_identity> + <Hsp_positive>306</Hsp_positive> + <Hsp_gaps>91</Hsp_gaps> + <Hsp_align-len>618</Hsp_align-len> + <Hsp_qseq>MKSENMSTMRRRKVIADSKGERDAASTASDQVDSLEL---------IGLKLDDVQSANELVAEVIE------EKGNNLIDSVDNVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDE--PESPGLPERILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKDDKKPTDMLGDLLKTT-KGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGE------------WGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGI----SKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGP-----GIIDKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTPKPAAPAT-SEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNN--VNNSKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>MAQQSLKSEVRDRVLAKSASLRDARKQIIDKANSQTLKPQESPQEAVQTPIDDLSPVSSTMSQALQQSSTSNEIGRASLDELHNISESSKL---------------------INQRLQKLSTLLESKFVNAETKPVELNERA---VDVIKDYVEKPEQKVPEPNPIP-KLLPGIEYTSSLGD-------TKDDQSKTVDQKE---KREDANGTGVKSILKTGFGKTVSVIDRISGFLFKYTLSAAIASAKIVGGLFALILGFDLLRIHFKYWGEKLMEKFDQISDWFGENISAPFNALLERWTPVFESIMDSVGFVKRAWENGDWG----ALISGIGSAIDTATTSLLVGIQSALAKLGAAILDKLGFKDAADNLEGAAIQNKQNHTDAVLSDKEKIALAEYQKKNIEKGEAPSRGGITSFLPDSWRKNLDLITEQ----DYNQIKAEEKDMGRLKSMSSDDQTKVLIKNNEAKDALDRYAEAGRKLDVNNEQDKARLNKLYNEASTRVKDKDLSNTPEVQKHLEGRLERIKNSINAKKVKVEPAPSNESKDATTASRIQAIDSKKNS------SAGNGNASNTNVQNNIVKSNRQINIQAPVTSSNAPGIFKATSAN</Hsp_hseq> + <Hsp_midline>M +++ + R +V+A S RDA D+ +S L + +DD+ + +++ ++ E G +D + N++E ++L I+ +L KL+++LESK E K E A + VI+D + P++ PE +P ++LP ++ ++L D ++ ++ DQK+ K D G +K+ K GF T+S+ D+IS LFKYT++A +AK+ LFAL+LG DLLRIHFKYW +K M FD+ S GE W + +SI +G +K+ WE GDW A++ G+ I + + +GI +K+ A+ILD LGF++AA + G+A++ Q T LS+ ++ ALA+YQ K IE+G GI + + D + + D Q +++ LK+M+ + + + LIK NEA+ A+ R + +D N + L K YN A + D +S+ P +K L+ R +R+++ K P P+ + + R+Q I +N+ S G+ N +NT V N V +++ I+ VT++ APG+F AT N</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>28</Hit_num> + <Hit_id>gi|639438514|ref|YP_009030254.1|</Hit_id> + <Hit_def>baseplate hub subunit, tail length determinator [Serratia phage PS2] >gi|625370587|gb|AHY25447.1| baseplate hub subunit, tail length determinator [Serratia phage PS2]</Hit_def> + <Hit_accession>YP_009030254</Hit_accession> + <Hit_len>572</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>211.46</Hsp_bit-score> + <Hsp_score>537</Hsp_score> + <Hsp_evalue>6.69261e-57</Hsp_evalue> + <Hsp_query-from>42</Hsp_query-from> + <Hsp_query-to>570</Hsp_query-to> + <Hsp_hit-from>35</Hsp_hit-from> + <Hsp_hit-to>566</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>158</Hsp_identity> + <Hsp_positive>276</Hsp_positive> + <Hsp_gaps>33</Hsp_gaps> + <Hsp_align-len>547</Hsp_align-len> + <Hsp_qseq>LDDVQSANELVAEVIEEKGNNLIDSVDNVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDP-DEPESPGLPERILP-PL-DDNNNLPDEDFFPPVPQEPENNKKDQKKDDKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDAL-GFENAATTIRGSALEGFQERTGNSLSEDD-QKALAKYQSKRIEEGPGIIDKAGEFKTRAFDWVLGREN------KIDSTQAS--DRDQETQNLKAMAPEK----REETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKY-QKLKEDNTPKPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQTVTATPAPGVF</Hsp_qseq> + <Hsp_hseq>LDDIVEANELIADRVEDNTNRSVAAQEDSTAATELVAENTEHGNKHLSNIADTARQISSKLSEFADRLNSKIEASVQSGLPAIGNQATAIQAIEEQINTPLNEEVLADAIEKLLPMPVKSETDVFPEPEKPKEPEQNPQEDKREEERKDKEKSQASEKILSAVKGGFKSTYGLLNNIAGSLFKYTITAAANMLKWAGIMFAIVFAIDLIRVHFKYWQKVFEKSLDELNEQVGAWGPILTDIFNTAQEMRDYWAKGQYGDLVTSLVQGIGRTLLDLGHMIMFGIGKAIASMLDAIPGMSETAKKVEGRAIRTYSEQTGYVPDEEERQKVIAVEKYDQGQQYKDLKDEANKYTEDQFVKKTGNRGFLNDGISLNETQARQIHKDIRSGKLKDSDIEKEIGIQADLAMRMNTIENRVQRTSG--------SPSTNAELMDNLSKLAKDIGNADI--QSYMKEPLQERVQKMESALAERTKPKVTPKPAAE--SAEATQVKEVEATIKPKETASTNAG---TTLNNINNVRNSRTVVQVQPRSSIPSGGIM</Hsp_hseq> + <Hsp_midline>LDD+ ANEL+A+ +E+ N + + ++ TEL AE +E + + + A IS KLS+ A L SK++A Q + + +T + IE+++ P +E E++LP P+ + + P+ + Q P+ +K+++++ DK+ + +L KGGFK+T + + I+ LFKYT+TA A K A ++FA+V IDL+R+HFKYW F + DE + + G WG +L IF +++ +W G + L ++V+G+ + +L ++ GI K AS+LDA+ G A + G A+ + E+TG E++ QK +A + + ++ + D+A ++ F G ++ TQA +D + LK EK + + ++ N VQR +P+ L + K I ++ I Q K+ L +R Q++ES ++ K TPKPAA S + +V+ ++ KE + + G +NNV NS+T+ QVQ ++ P+ G+ </Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>29</Hit_num> + <Hit_id>gi|238695064|ref|YP_002922258.1|</Hit_id> + <Hit_def>tail length regulator [Enterobacteria phage JSE] >gi|220029200|gb|ACL78135.1| tail length regulator [Enterobacteria phage JSE]</Hit_def> + <Hit_accession>YP_002922258</Hit_accession> + <Hit_len>577</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>204.527</Hsp_bit-score> + <Hsp_score>519</Hsp_score> + <Hsp_evalue>2.33408e-54</Hsp_evalue> + <Hsp_query-from>22</Hsp_query-from> + <Hsp_query-to>570</Hsp_query-to> + <Hsp_hit-from>13</Hsp_hit-from> + <Hsp_hit-to>572</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>167</Hsp_identity> + <Hsp_positive>299</Hsp_positive> + <Hsp_gaps>83</Hsp_gaps> + <Hsp_align-len>596</Hsp_align-len> + <Hsp_qseq>RDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVDN-------VAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQE-PE-NNKKDQKKDDKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIY----NLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKAGEF-----KTRAFDWVLGR--ENKIDSTQASD--RDQETQNLKAMAPEKREETLIK------QNEARAAVQRL---------------EKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTPKPAAPATSEDN----QRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQTVTATPAPGVF</Hsp_qseq> + <Hsp_hseq>KEAEENPIDKLNKLDKLN-SIDNLQAATELVAETVEQKSNEVVGAVEDNTAANELTAENTQSTAGNTQKTYEELQKLNNFSSQMNEKLRGFGVMMERRFGVV--------SKMASGIGAIEEALKKPEQPQTMPSPQPVLPTVPEQ---PNNDNYQGLPKKKPDADDRKKKNATDKRNADSMENLLKVVRGGFKETIGISNKVLGMLFKITLTAMAEAAKWGAILMGIVFVIDTLMVHFRYWSDLFETKFNEFMDKAGGWAGPISDILTTVRQVRDYWSKGEYGELIKSLVMGIGDAFYKTFIQLDRIITTGIAKILRMI---PGMGDYADKLEYGALKSAVAQ-GYTPNERELELMDKVESEHEE------DKYGERTGWTGKARDIGEAIGESIKDKVNEGLVSLGWRDQ-----KDVDAEKRQEELKRGEYKSVSAEQRSASRKLRIKSEGAINNINEVMENLSGDYDKE---RMGELKKDIDVYREQVQDPTLVE--SDRSQLERLIEKFDEMYADKTKGVVPTKSVPATETETAKQAERTEQMQKQAAIQQQTTNQTS--NVNNTQI--VTNNRTIKQGAPTTRIDAPGTI</Hsp_hseq> + <Hsp_midline>++A D+++ L+ + +D++Q+A ELVAE +E+K N ++ +V++ AE T+ A +++T E ++ L +S +++KL M+E + V + ++G+ IE+ L P++P++ P+ +LP + + P+ D + +P++ P+ +++K + DK+ D + +LLK +GGFK TI I++K+ MLFK T+TA+AEAAK A+L +V ID L +HF+YW+D F + F+EF +AG W G + I + ++ +W G++ L ++V G+ D Y L I++ GI+KI I G + A + AL+ + G + +E + + + K +S+ E DK GE K R +G ++K++ S RDQ K + EKR+E L + E R+A ++L E GD D E M L+K + ++ + D + + + + +L++ ++ + Y + P + PAT + +R + +QK ++Q+ T NV NTQ+ V N++TI Q T APG </Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>30</Hit_num> + <Hit_id>gi|157311483|ref|YP_001469526.1|</Hit_id> + <Hit_def>gp29 baseplate hub subunit tail length determinator [Enterobacteria phage Phi1] >gi|149380687|gb|ABR24692.1| gp29 baseplate hub subunit tail length determinator [Enterobacteria phage Phi1]</Hit_def> + <Hit_accession>YP_001469526</Hit_accession> + <Hit_len>577</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>200.675</Hsp_bit-score> + <Hsp_score>509</Hsp_score> + <Hsp_evalue>5.33273e-53</Hsp_evalue> + <Hsp_query-from>42</Hsp_query-from> + <Hsp_query-to>570</Hsp_query-to> + <Hsp_hit-from>32</Hsp_hit-from> + <Hsp_hit-to>572</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>163</Hsp_identity> + <Hsp_positive>286</Hsp_positive> + <Hsp_gaps>82</Hsp_gaps> + <Hsp_align-len>576</Hsp_align-len> + <Hsp_qseq>LDDVQSANELVAEVIEEKGNNLIDSVDNVAEGTELAAEASE-------RTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQE-PE-NNKKDQKKDDKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIY----NLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKAGEF-----KTRAFDWVLGR--ENKIDSTQASD--RDQETQNLKAMAPEKREETLIK------QNEARAAVQRL---------------EKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTPKPAAPATSEDN----QRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQTVTATPAPGVF</Hsp_qseq> + <Hsp_hseq>IDNLQAATELVAETVEQKSNEVVGAVEDNTAANELTAENTQSTAGNTKKTYEELQKLNNFSSQMNEKLRGFGVMMERRFGVV--------SKMASGIGAIEEALKKPEQPQTMPSPQPVLPTVPEQ---PNNDNYQGLPKKKPDVDDRKKKNAADKRNADSMENLLKVVRGGFKETIGISNKVLGMLFKITLTAMAEAAKWGAILMGIVFVIDTLMVHFRYWSDLFETKFNEFMDKAGGWAGPISDILTTVRQVRDYWSKGEYKELIKSLVMGIGDAFYKTFIQLDRIITTGIAKILRMI---PGMGDYADKLEYGALKSAVAQ-GYTPNERELELMDKVESEHEE------DKYGERTGWTGKARDIGEAIGDSIKDKVNEGLVSLGWRDQ-----KDVDAEKRQEELKRGEYKSVSAEQRSASRKLRIKSEGAINNINEVMENLSGDYDKE---RMGELKKDIDVYREQVQDPTLVE--SDRSQLERLIEKFDEMYADKTNGVVPTNPVPATETETAKQAERTEQMQKQAAIQQQTTNQTS--NVNNTQI--VTNNRTVKQGAPTTRIDAPGTI</Hsp_hseq> + <Hsp_midline>+D++Q+A ELVAE +E+K N ++ +V++ EL AE ++ +T E ++ L +S +++KL M+E + V + ++G+ IE+ L P++P++ P+ +LP + + P+ D + +P++ P+ +++K + DK+ D + +LLK +GGFK TI I++K+ MLFK T+TA+AEAAK A+L +V ID L +HF+YW+D F + F+EF +AG W G + I + ++ +W G++ L ++V G+ D Y L I++ GI+KI I G + A + AL+ + G + +E + + + K +S+ E DK GE K R +G ++K++ S RDQ K + EKR+E L + E R+A ++L E GD D E M L+K + ++ + D + + + + +L++ ++ + Y P PAT + +R + +QK ++Q+ T NV NTQ+ V N++T+ Q T APG </Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>31</Hit_num> + <Hit_id>gi|33620639|ref|NP_891750.1|</Hit_id> + <Hit_def>tail length regulator [Enterobacteria phage RB49] >gi|33438535|gb|AAL15120.2| tail length regulator [Enterobacteria phage RB49]</Hit_def> + <Hit_accession>NP_891750</Hit_accession> + <Hit_len>577</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>200.675</Hsp_bit-score> + <Hsp_score>509</Hsp_score> + <Hsp_evalue>5.38583e-53</Hsp_evalue> + <Hsp_query-from>42</Hsp_query-from> + <Hsp_query-to>570</Hsp_query-to> + <Hsp_hit-from>32</Hsp_hit-from> + <Hsp_hit-to>572</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>164</Hsp_identity> + <Hsp_positive>284</Hsp_positive> + <Hsp_gaps>82</Hsp_gaps> + <Hsp_align-len>576</Hsp_align-len> + <Hsp_qseq>LDDVQSANELVAEVIEEKGNNLIDSVDN-------VAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQE-PE-NNKKDQKKDDKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIY----NLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKAGEF-----KTRAFDWVLGR--ENKIDSTQASD--RDQETQNLKAMAPEKREETLIK------QNEARAAVQRL---------------EKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTPKPAAPATSEDN----QRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQTVTATPAPGVF</Hsp_qseq> + <Hsp_hseq>IDNLQAATELVAETVEQKSNEVVGAVEDNTAANELTAENTQSTAGNTQKTYEELQKLNNFSSQMNEKLRGFGVMMERRFGVV--------SKMASGIGAIEEALKKPEQPQTMPSPQPFLPTVPEQ---PNNDNYQGLPKKKPDVDDRKKKNATDKRNADSMENLLKVVRGGFKETIGISNKVLGMLFKITLTAMAEAAKWGAILMGIVFVIDTLMVHFRYWSDLFETKFKEFMDKAGGWAGPISDILTTVRQVRDYWSKGEYKELIKSLVMGIGDAFYKTFIQLDRIITTGIAKILRMI---PGMGDYADNLEYGALKSAVAK-GYKPNERELELMDKVESEHEE------DKYGERTGWTGKARDIGEAIGESIKDKFNEGLVSLGWRDQ-----KDVDAEKRQEELKRGEYKSVSAEQRSASRKLKIKSEGAINNINEVMENLSGDYDKE---RMEELKKDIDVYREQVQDPTLVE--SDRSQLERLIEKFDEMYADKTNGVVPTNPVPATETETAKQAERTEQMQKQAAIQQQTTNQTS--NVNNTQI--VTNNRTIKQGAPTTRIDAPGTI</Hsp_hseq> + <Hsp_midline>+D++Q+A ELVAE +E+K N ++ +V++ AE T+ A +++T E ++ L +S +++KL M+E + V + ++G+ IE+ L P++P++ P+ LP + + P+ D + +P++ P+ +++K + DK+ D + +LLK +GGFK TI I++K+ MLFK T+TA+AEAAK A+L +V ID L +HF+YW+D F + F EF +AG W G + I + ++ +W G++ L ++V G+ D Y L I++ GI+KI I G + A + AL+ + G +E + + + K +S+ E DK GE K R +G ++K + S RDQ K + EKR+E L + E R+A ++L E GD D E M+ L+K + ++ + D + + + + +L++ ++ + Y P PAT + +R + +QK ++Q+ T NV NTQ+ V N++TI Q T APG </Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>32</Hit_num> + <Hit_id>gi|392973136|ref|YP_006489094.1|</Hit_id> + <Hit_def>baseplate hub subunit [Acinetobacter phage ZZ1] >gi|390058277|gb|AFL47731.1| baseplate hub subunit, tail length determinator [Acinetobacter phage ZZ1]</Hit_def> + <Hit_accession>YP_006489094</Hit_accession> + <Hit_len>585</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>195.667</Hsp_bit-score> + <Hsp_score>496</Hsp_score> + <Hsp_evalue>4.41683e-51</Hsp_evalue> + <Hsp_query-from>112</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>105</Hsp_hit-from> + <Hsp_hit-to>585</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>156</Hsp_identity> + <Hsp_positive>246</Hsp_positive> + <Hsp_gaps>32</Hsp_gaps> + <Hsp_align-len>489</Hsp_align-len> + <Hsp_qseq>KVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEP--ENNKKDQKKDDKKPTDMLGDLLKTTKG----GFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEW-----------GGLLQSIFGMLGD---IKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDK---AGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTPKPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQT-VTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>KLAALSERLKEKYEAANDATVDLPVKAEEPTTSES--LSSRISPEDTNNNVIPSVVADDPKPSKDLLESTNEVKGAPSLGPAAMIVSGLQTLTGAVKTGFAKSKSVSDKIAGMLFKYTVTQAVNAAKIALAVFGIILALDLLKMAWNAWGEKIMAKFEEWTQTFSKWWDNFKEWSTYFSDMKYAFEGMQGDLMGIRNAWESGDWPALASAIGTAFVDGIKTLSGIMDRVITKLIATILNKLGFKDTAKSIEAEGLQRYQNMTNNKLDPENQQKLAEEQLKR-EKKDGLTSTQRGVTSFLPDSWREKLGFITKNEHSQIEAEKKDQKARQSLSKDDQVKVVAASNEAREAVARLENIAVNADPNNKGQMATLDKYRKEAQNYINNPALSKSPNVKAELQNQLDRLTPK-QSVK--NTVTPETSTASKDVQTAKNIQIAE--AQKAKTNAVQNNNTANVQNNIVKSSRQYNVQAPITGTAAPGIFKATGVN</Hsp_hseq> + <Hsp_midline>K+ A+ ++++E +A+ + K +P ES L RI P +NN +P P P + E+ + + P M+ L+T G GF + S++DKI+ MLFKYTVT AAK+A +F ++L +DLL++ + W +K M+ F+E++ +W + + GM GD I+ WE+GDW LA AI D I LS IM I+K+ A+IL+ LGF++ A +I L+ +Q T N L ++Q+ LA+ Q KR E+ G+ F ++ LG K + +Q ++ + ++++ + + + + NEAR AV RLE + DP N M +L+K A+ I++ A+S P K EL + R+ K Q +K NT P S+D Q +NIQ AE +++K + N NN+ S + VQ +T T APG+F ATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>33</Hit_num> + <Hit_id>gi|326536335|ref|YP_004300776.1|</Hit_id> + <Hit_def>gp29 baseplate hub [Acinetobacter phage 133] >gi|299483416|gb|ADJ19510.1| gp29 baseplate hub [Acinetobacter phage 133]</Hit_def> + <Hit_accession>YP_004300776</Hit_accession> + <Hit_len>582</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>182.185</Hsp_bit-score> + <Hsp_score>461</Hsp_score> + <Hsp_evalue>1.85312e-46</Hsp_evalue> + <Hsp_query-from>75</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>84</Hsp_hit-from> + <Hsp_hit-to>582</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>164</Hsp_identity> + <Hsp_positive>246</Hsp_positive> + <Hsp_gaps>65</Hsp_gaps> + <Hsp_align-len>533</Hsp_align-len> + <Hsp_qseq>ELAAEASERTTESIKTLTGVASTISDK---LSKLASMLESKV-------QAVEQKVQESGASASTGLSVIED---KLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKDDKKPTDMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDE-------FSAEAGEWGGLLQSIFGMLGD----IKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEG-----PGIIDKAGEFKTRAFDWVLG--RENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTPKPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>ELQQEAVEANTH----LEQIEKSTTDSNATLSKLSSQLESKFSGQVQSPQVVEHKTTEE---------IIKDFAEKSKSKTESTEPAILPAVLPEATKKPNLGGAT----TPKE-----QKAKSDSTKASHPAMKVFNVVKSGFKSVKSVGDKIAGFLFKGALTAAIEAAKMAGIIFLIIAAIDLVRIHFKYWTEKFSAKFDAVKEIIMGYFDRFGNWMESIMPMFSGLFDAIDYIRNVFAKGDWSALAGAIGNVMKEAFNSLGAMIQNGIAKLASILLRKFGFNDTADSIEAIGLENKQNMTNTPLTPEEQKKVAKQQQKMLDKDYTPTQTGIT----AFLPDKFRKAIGALSDGEYDQIQAEKKNM--SQLKGLNKEDQTNTIGAMNEARAALNRYENKVERLDPNDPNQAAKIDNAYKEAKTAISDPDLKNVPDVKIELENQLGKLQAKTGRAAPKPAPAANSPEAAQANSIA---RKTNEVKAPVAQAANNTNVNTTM---VKNNKSVHVQAPVTSTNAPGVFHGTGVN</Hsp_hseq> + <Hsp_midline>EL EA E T L + + +D LSKL+S LESK Q VE K E +I+D K E P + +LP NL P+E + K D K + + K GFK+ S+ DKI+ LFK +TA EAAKMA ++F ++ IDL+RIHFKYWT+KF + FD + G W + +F L D I+ + GDWS LA AI + + +L ++ GI+K+++ +L GF + A +I LE Q T L+ ++QK +AK Q K +++ GI F F +G + + D QA ++ LK + E + T+ NEARAA+ R E + +DP +P ++ AY AK +ISD + + P K EL+ + ++++K + P +P ++ N +K K ++ + NV T V N+K++H VT+T APGVF TGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>34</Hit_num> + <Hit_id>gi|311993473|ref|YP_004010338.1|</Hit_id> + <Hit_def>gp29 baseplate hub subunit [Acinetobacter phage Acj9] >gi|295917430|gb|ADG60101.1| gp29 baseplate hub subunit [Acinetobacter phage Acj9]</Hit_def> + <Hit_accession>YP_004010338</Hit_accession> + <Hit_len>572</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>172.17</Hsp_bit-score> + <Hsp_score>435</Hsp_score> + <Hsp_evalue>5.19477e-43</Hsp_evalue> + <Hsp_query-from>86</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>72</Hsp_hit-from> + <Hsp_hit-to>572</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>159</Hsp_identity> + <Hsp_positive>249</Hsp_positive> + <Hsp_gaps>58</Hsp_gaps> + <Hsp_align-len>525</Hsp_align-len> + <Hsp_qseq>ESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEPENN--KKDQKKDDKK-----PTDMLGDLLKTTKG-------GFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSA-EAGEWGGL---------LQSIF-GMLGD---IKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKAGEFKTRAFD-----WVLGRENKIDSTQASDRDQ-ETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTPKPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>EETKYLSNTADEISAKLSVLSERLKVKYDAASPDAPPVVRDNSTA-EVLADRL-DAQSEEQPKKQAWMPQPM-------------PVEKKPSDDLLSKSEDKGSKEGVKGAPNESTIPMIAAVKGVGSVVKAGFNKSIGIVDKISNLLFKMSVKQIADAALMGAAIFGIILSIDLLKAAWAAWGEKIMAKVEEWTTIFKGWWEGFKGWASSFSDLTTAFEGMRGDFMGIRNAWESGDWPSLAKALGTTIKDGLMTLSGILDRLFTKVLSTILDKVGLGKAAKAVEAEGLQRYQGKTNNKLSDENQKKLAEEQIRR-EKKDGLTPTQRGLTSFLPDKMRKGWAL-TDNEYNQIQAEKKDKAATKNL---SHDDQVKVTAATNEAREAVARFKNIADNYDPNKKDQAAQFDKYKKEAQAYISKPELAKSPAVKAELEAQVAAI-SKGKGGKASVAPEKS--ANSQDSGTVKNIKVAEAQRAANKNASPAGNTV-IQTNVAKTNKNVHVQAPVTSTTAPGVYGATKVN</Hsp_hseq> + <Hsp_midline>E K L+ A IS KLS L+ L+ K A ST V+ D+L D E P + P+ PV ++P ++ K + K K+ P + ++ KG GF +I I DKIS++LFK +V +A+AA M A +F ++L IDLL+ + W +K M+ +E++ G W G L + F GM GD I+ WE+GDW LA A+ + D + LS I+ +K+ ++ILD +G AA + L+ +Q +T N LS+++QK LA+ Q +R E+ G+ + D W L +N+ + QA +D+ T+NL + + + + NEAR AV R + + DP +K A+ IS ++ PA K EL+ + + SK + K P+ + A S+D+ V+NI+ AE + +K ++ N Q N +K +H VT+T APGV+GAT VN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>35</Hit_num> + <Hit_id>gi|310722277|ref|YP_003969101.1|</Hit_id> + <Hit_def>unnamed protein product [Aeromonas phage phiAS4] >gi|306021120|gb|ADM79655.1| baseplate hub [Aeromonas phage phiAS4]</Hit_def> + <Hit_accession>YP_003969101</Hit_accession> + <Hit_len>565</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>150.984</Hsp_bit-score> + <Hsp_score>380</Hsp_score> + <Hsp_evalue>5.93083e-36</Hsp_evalue> + <Hsp_query-from>44</Hsp_query-from> + <Hsp_query-to>569</Hsp_query-to> + <Hsp_hit-from>36</Hsp_hit-from> + <Hsp_hit-to>560</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>143</Hsp_identity> + <Hsp_positive>271</Hsp_positive> + <Hsp_gaps>69</Hsp_gaps> + <Hsp_align-len>560</Hsp_align-len> + <Hsp_qseq>DVQSANELVAEVIEEKGN-------NLIDSVDNVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQK--VQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEPENNKK----DQKKDDKKPTDMLGD-LLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETL-IKQNEARAAVQRLE------KYIGDVDPENPTNMQSLEKAY-------NSAKKSISDSAISDQPA--TKKELDKRFQRVESKYQKLKEDNTPKPAA---PATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNV-NNSKTIHQVQTVTATPAPGV</Hsp_qseq> + <Hsp_hseq>DLLASSELIAETVEQ-GNSELRKIVNNTSETENIAAATELSAEATEISNQHLKEISDTSKKTFSKLSEFAEKLKNNFLADVEKNPITATNTSDQTAKKIVEEEEQTPKNNPVLGYLKTISE---------DIKFLKNDKPKEEEKEDKVKPDKEENVERAIDRIGDRIVSSVDNGFKKTISVADSISSMLFKYTLTAVLNFAKMAALVLSLIMTFDVLSRHFTHWTKMFEENYAEFKNQLGSLATPFENVHGVITDLMNYFKSDEYTKMFVRLAEGAFDQMKYMVNMMMVGLAKLGATILRALGADEKADSLEASAISVAASEVGYTPSKEEEEVIGRVRKREAEDANN---------TEA-NWFEKQWRKVNG-----EDEETPDEK----EKREKRMEIAKNTTAEQFGRYDVLSGKINHVGVTAKKNETSPELLNKHRELLDDRSNEVEQSYQEGKLTKESYEQLRVEIDK-----QTKFLAEHEKTLVVPTAAIKPAPEPEVSTVKSIDKEEKRVESKKQEAASQNNYHTKANIVKNQNQTIVQAPR-TSSPGPGI</Hsp_hseq> + <Hsp_midline>D+ +++EL+AE +E+ GN N +N+A TEL+AEA+E + + +K ++ + KLS+ A L++ A +K + + S T ++E++ P G + I D F + E + D++++ ++ D +GD ++ + GFK TIS+ D ISSMLFKYT+TA+ AKMAA++ +L++ D+L HF +WT F N+ EF + G +++ G++ D+ ++++ +++ + V + +G D + + +M +G++K+ A+IL ALG + A ++ SA+ G + S+++++ + + + + E+ T A +W + K++ D+ET + K EKRE+ + I +N R + ++G +N T+ + L K N ++S + ++ + + E+DK ++K+ E P A PA + V++I K E E K+ N +T+ N V N ++TI Q T++P PG+</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>36</Hit_num> + <Hit_id>gi|472438116|ref|YP_007677896.1|</Hit_id> + <Hit_def>baseplate hub subunit tail length determinator [Aeromonas phage Aes012] >gi|395653254|gb|AFN69809.1| baseplate hub subunit tail length determinator [Aeromonas phage Aes012]</Hit_def> + <Hit_accession>YP_007677896</Hit_accession> + <Hit_len>565</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>150.599</Hsp_bit-score> + <Hsp_score>379</Hsp_score> + <Hsp_evalue>8.25687e-36</Hsp_evalue> + <Hsp_query-from>44</Hsp_query-from> + <Hsp_query-to>569</Hsp_query-to> + <Hsp_hit-from>36</Hsp_hit-from> + <Hsp_hit-to>560</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>143</Hsp_identity> + <Hsp_positive>271</Hsp_positive> + <Hsp_gaps>69</Hsp_gaps> + <Hsp_align-len>560</Hsp_align-len> + <Hsp_qseq>DVQSANELVAEVIEEKGN-------NLIDSVDNVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQK--VQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEPENNKK----DQKKDDKKPTDMLGD-LLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETL-IKQNEARAAVQRLE------KYIGDVDPENPTNMQSLEKAY-------NSAKKSISDSAISDQPA--TKKELDKRFQRVESKYQKLKEDNTPKPAA---PATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNV-NNSKTIHQVQTVTATPAPGV</Hsp_qseq> + <Hsp_hseq>DLLASSELIAETVEQ-GNSELRKIVNNTSETENIAAATELSAEATEISNQHLKEISDTSKKTFSKLSEFAEKLKNNFLADVEKNPITATNTSDQTAKKIVEEEEQTPKDNPVLGYLKTISE---------DIKFLKNDKPKEEEKEDKVKPDEEENVERAIDRIGDRIVSSVDNGFKKTISVADSISSMLFKYTLTAVLNFAKMAALVLSLIMTFDVLSRHFTHWTKMFEENYAEFKNQLGSLATPFENVHGVITDLMNYFKSDEYTKMFVRLAKGAFDQMKYMVNMMMVGLAKLGATILRALGADEKADSLEASAISVAASEVGYTPSKEEEEVIGRVRKREAEDANN---------TEA-NWFEKQWRKVNG-----EDEETPDEK----EKREKRMEIAKNTTAEQFGRYDVLRGKINHVGVTAKKNETSPELLNKHRELLDDRSNEVEQSYQEGKLTKESYEQLRVEIDK-----QTKFLAEHEKTLVVPTAAIKPAPEPEVSTVKSIDKEEKRVESKKQEAASQTNYHTKANIVKNQNQTIVQAPR-TSSPGPGI</Hsp_hseq> + <Hsp_midline>D+ +++EL+AE +E+ GN N +N+A TEL+AEA+E + + +K ++ + KLS+ A L++ A +K + + S T ++E++ P + G + I D F + E + D++++ ++ D +GD ++ + GFK TIS+ D ISSMLFKYT+TA+ AKMAA++ +L++ D+L HF +WT F N+ EF + G +++ G++ D+ ++++ +++ + V + KG D + + +M +G++K+ A+IL ALG + A ++ SA+ G + S+++++ + + + + E+ T A +W + K++ D+ET + K EKRE+ + I +N R + ++G +N T+ + L K N ++S + ++ + + E+DK ++K+ E P A PA + V++I K E E K+ +T+ N V N ++TI Q T++P PG+</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>37</Hit_num> + <Hit_id>gi|311992947|ref|YP_004009814.1|</Hit_id> + <Hit_def>gp29 baseplate hub subunit [Acinetobacter phage Acj61] >gi|295815236|gb|ADG36162.1| gp29 baseplate hub subunit [Acinetobacter phage Acj61]</Hit_def> + <Hit_accession>YP_004009814</Hit_accession> + <Hit_len>597</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>149.443</Hsp_bit-score> + <Hsp_score>376</Hsp_score> + <Hsp_evalue>2.04985e-35</Hsp_evalue> + <Hsp_query-from>44</Hsp_query-from> + <Hsp_query-to>576</Hsp_query-to> + <Hsp_hit-from>46</Hsp_hit-from> + <Hsp_hit-to>597</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>174</Hsp_identity> + <Hsp_positive>287</Hsp_positive> + <Hsp_gaps>61</Hsp_gaps> + <Hsp_align-len>573</Hsp_align-len> + <Hsp_qseq>DVQSANELVAEV---IEEKGNNLIDSVDNVAEG-----TELAAEASERTTESI------KTLTGVASTISDKLSKLASML-ESKVQA-VEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKDDKKPT------DMLGDLLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSA-------EAGEWGGL---LQSIF-GM---LGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKR-IEEGPGIIDKA-GEFKTRAFDWVLG--RENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDNTPKPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQTVTATPAPGVFGATGVN</Hsp_qseq> + <Hsp_hseq>DMKAANDALDDIRDQVSDKADDPIDTLDASKQSLASIDNKMSQQISDNLASSIVQRRYEGTMIGETQNISAKLSLLLGKLTEMHVDAQVEAAQKDNIKSEPTTSEVIGDLIKKEQPEQKPEIAEKILPTEEK----------PSTKLLDENAGKSGKELVGKANPIVMGLDKVGGLLKT---GFKSSIGVMDKISGMLFKFTATQAINAAKVAAAIFAIILAIDLIKIYWSVWGEKIMAKLSEWAEIFKGWWDTFTDWGSQFSDFKTAFEGMGANLMEIKNAWVSGDFPALAKALGNAIIDMGKTISGIIGRTLASLFGPLLRKLGFGETADNLEAAGLRHYQNMTDNRLSPENQRKLAENQVKQEAKDGKTATERGMTDFLPNTWRNKLGFISDNELSQINAEKKDQSARS--NLSQEQKVDSVAATNEAREAIARYKKFADAANPDNAGDMAKVDKYKKEAAQYLSNKALDLTPSIKSELQTQYNAIKVKSKKDDV----KPETSAASKDTQTVNSIKTAEAAK--ANQQTQQTNVANVQNNVVKNSKTVHVQAPTTSTRAPGVHKATGVN</Hsp_hseq> + <Hsp_midline>D+++AN+ + ++ + +K ++ ID++D + +++ + S+ SI T+ G IS KLS L L E V A VE +++ S T VI D + + P + E+ILP + P EN K K+ K D +G LLKT GFK++I + DKIS MLFK+T T AAK+AA +FA++L IDL++I++ W +K M+ E++ +WG ++ F GM L +IK W +GD+ LA A+ + D+ +S I+ ++ + +L LGF A + + L +Q T N LS ++Q+ LA+ Q K+ ++G ++ +F + LG +N++ A +DQ ++ ++ E++ +++ NEAR A+ R +K+ +P+N +M ++K A + +S+ A+ P+ K EL ++ ++ K +K KP A S+D Q V +I+ AE AK + + T NVAN Q N V NSKT+H T+T APGV ATGVN</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>38</Hit_num> + <Hit_id>gi|401824980|gb|AFQ22670.1|</Hit_id> + <Hit_def>baseplate hub [Stenotrophomonas phage IME13]</Hit_def> + <Hit_accession>AFQ22670</Hit_accession> + <Hit_len>565</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>147.902</Hsp_bit-score> + <Hsp_score>372</Hsp_score> + <Hsp_evalue>5.89358e-35</Hsp_evalue> + <Hsp_query-from>44</Hsp_query-from> + <Hsp_query-to>569</Hsp_query-to> + <Hsp_hit-from>36</Hsp_hit-from> + <Hsp_hit-to>560</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>142</Hsp_identity> + <Hsp_positive>270</Hsp_positive> + <Hsp_gaps>69</Hsp_gaps> + <Hsp_align-len>560</Hsp_align-len> + <Hsp_qseq>DVQSANELVAEVIEEKGN-------NLIDSVDNVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQK--VQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEPENNKK----DQKKDDKKPTDMLGD-LLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETL-IKQNEARAAVQRLE------KYIGDVDPENPTNMQSLEKAY-------NSAKKSISDSAISDQPA--TKKELDKRFQRVESKYQKLKEDNTPKPAA---PATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNV-NNSKTIHQVQTVTATPAPGV</Hsp_qseq> + <Hsp_hseq>DLLAASELISETVEQ-GNSELRKIVNNTSETENIAAATEISAEATEISNQHLKEISDTSKKTFSKLSEFAEKLKNNFLADVEKNPITTTNTSDQTAKKIVEEEEQTPKNNPVLGYLKTISE---------DIKFLKNDKPKEEEKEDKVKPDEEENVERAIDRIGDRIVSSVDNGFKKTISIADSISSMLFKYTLTAVLNFAKMAALVLSLIMTFDVLSRHFTHWTKMFEENYAEFKNQLGSLATPFENVHGVITDLMNYFKSDEYTKMFVRLAEGAFDQMKYMVNMMMVGLAKLGATILRALGADEKADSLEASAISVAASEVGYTPSKEEEEVIGRVRKREAEDANN---------TEA-NWFEKQWRKVNG-----EDEETPDEK----EKREKRMEIAKNTTAEQFGRYDVLSGKINHVGVTAKKNETSPELLNKHRELLDDRSNEVEQSYQEGKLTKESYEQLRVEIDK-----QTKFLAEHEKTLVVPTAAIKPAPEPEVSTVKSIDKEEKRVESKKQEAASQTNYHTKANIVKNQNQTIVQAPR-TSSPGPGI</Hsp_hseq> + <Hsp_midline>D+ +A+EL++E +E+ GN N +N+A TE++AEA+E + + +K ++ + KLS+ A L++ A +K + + S T ++E++ P G + I D F + E + D++++ ++ D +GD ++ + GFK TISI D ISSMLFKYT+TA+ AKMAA++ +L++ D+L HF +WT F N+ EF + G +++ G++ D+ ++++ +++ + V + +G D + + +M +G++K+ A+IL ALG + A ++ SA+ G + S+++++ + + + + E+ T A +W + K++ D+ET + K EKRE+ + I +N R + ++G +N T+ + L K N ++S + ++ + + E+DK ++K+ E P A PA + V++I K E E K+ +T+ N V N ++TI Q T++P PG+</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>39</Hit_num> + <Hit_id>gi|109290160|ref|YP_656409.1|</Hit_id> + <Hit_def>gp29 base plate hub [Aeromonas phage 25] >gi|104345833|gb|ABF72733.1| gp29 base plate hub [Aeromonas phage 25]</Hit_def> + <Hit_accession>YP_656409</Hit_accession> + <Hit_len>565</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>145.976</Hsp_bit-score> + <Hsp_score>367</Hsp_score> + <Hsp_evalue>2.35249e-34</Hsp_evalue> + <Hsp_query-from>44</Hsp_query-from> + <Hsp_query-to>569</Hsp_query-to> + <Hsp_hit-from>36</Hsp_hit-from> + <Hsp_hit-to>560</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>142</Hsp_identity> + <Hsp_positive>269</Hsp_positive> + <Hsp_gaps>69</Hsp_gaps> + <Hsp_align-len>560</Hsp_align-len> + <Hsp_qseq>DVQSANELVAEVIEEKGN-------NLIDSVDNVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQK--VQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEPENNKK----DQKKDDKKPTDMLGD-LLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETL-IKQNEARAAVQRLE------KYIGDVDPENPTNMQSLEKAY-------NSAKKSISDSAISDQPA--TKKELDKRFQRVESKYQKLKEDNTPKPAA---PATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNV-NNSKTIHQVQTVTATPAPGV</Hsp_qseq> + <Hsp_hseq>DLLAASELISETVEQ-GNSELRKIVNNTSETENIAAATELSAEATEISNQHLKEISDTSKKTFSKLSEFAEKLKNNFLADVEKNPITATNTSDQTAKKIVEEEEQTPKNNPVLGYLKTISE---------DIKFLKNDKPKEEEKEDKVKPDKEENVESAIDRIGDRIVSSVDNGFKKTINIADSISSMLFKYTLTAVLNFAKMAALVLSLIMTFDVLSRHFTHWTKMFEENYAEFKNQLGSLATPFENVHGVITDLMNYFKSDEYTKMFVRLAEGAFDQMKYMVNMMMVGLAKLGATILRALGADEKADSLEASAISVAASEVGYTPSKEEEEVIGRVRKREAEDANN---------TEA-NWFEKQWRKVNG-----EDEETPDEK----EKREKRMEIAKNTTAEQFGRYDVLSGKINHVGVTAKKNETSPELLNKHRELLDDRSNEVEQSYQEGKLTKESYEQLRVEIDK-----QTKFLAEHEKTLVVPTAAIKPAPEPEVSTVKSIDKEEKRVESKKQEAASQTNYHTKANIVKNQNQTIVQAPR-TSSPGPGI</Hsp_hseq> + <Hsp_midline>D+ +A+EL++E +E+ GN N +N+A TEL+AEA+E + + +K ++ + KLS+ A L++ A +K + + S T ++E++ P G + I D F + E + D++++ + D +GD ++ + GFK TI+I D ISSMLFKYT+TA+ AKMAA++ +L++ D+L HF +WT F N+ EF + G +++ G++ D+ ++++ +++ + V + +G D + + +M +G++K+ A+IL ALG + A ++ SA+ G + S+++++ + + + + E+ T A +W + K++ D+ET + K EKRE+ + I +N R + ++G +N T+ + L K N ++S + ++ + + E+DK ++K+ E P A PA + V++I K E E K+ +T+ N V N ++TI Q T++P PG+</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>40</Hit_num> + <Hit_id>gi|423262258|ref|YP_007010857.1|</Hit_id> + <Hit_def>baseplate hub subunit tail length determinator [Aeromonas phage Aes508] >gi|402762136|gb|AFQ97250.1| baseplate hub subunit tail length determinator [Aeromonas phage Aes508]</Hit_def> + <Hit_accession>YP_007010857</Hit_accession> + <Hit_len>565</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>145.591</Hsp_bit-score> + <Hsp_score>366</Hsp_score> + <Hsp_evalue>3.57946e-34</Hsp_evalue> + <Hsp_query-from>44</Hsp_query-from> + <Hsp_query-to>569</Hsp_query-to> + <Hsp_hit-from>36</Hsp_hit-from> + <Hsp_hit-to>560</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>142</Hsp_identity> + <Hsp_positive>269</Hsp_positive> + <Hsp_gaps>69</Hsp_gaps> + <Hsp_align-len>560</Hsp_align-len> + <Hsp_qseq>DVQSANELVAEVIEEKGN-------NLIDSVDNVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQK--VQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEPENNKK----DQKKDDKKPTDMLGD-LLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETL-IKQNEARAAVQRLE------KYIGDVDPENPTNMQSLEKAY-------NSAKKSISDSAISDQPA--TKKELDKRFQRVESKYQKLKEDNTPKPAA---PATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNV-NNSKTIHQVQTVTATPAPGV</Hsp_qseq> + <Hsp_hseq>DLLASSELIAETVEQ-GNSELRKIVNNTSETENIAAATELSAEATEISNQHLKEISDTSKKTFSKLSEFAEKLKNNFLADVEKNPITTTNTSDQTAKKISEEEEQTPKNNPVLGYLKTISE---------DIKFLKNDKPKEEEKEDKVKPDKEENVERAIDRIGDRIVSSVDNGFKKTISVADSISSMLFKYTLTAVLNFAKMAALVLSLIMTFDVLSRHFTHWTKMFEENYAEFKNQLGSLATPFENVHGVITDLMNYFKSDEYTKMFVRLAEGAFDQMKYMVNMMMVGLAKLGATILRALGADEKADSLEASAISVAASEVGYTPSKEEEEVIGRVRKREAEDANN---------TEA-NWFEKQWRKVNG-----EDEETPDEK----EKREKRMEIAKNTTAEQFGRYDVLSGKINHVGVTAKKNETSPELLNKHRELLDDRSNEVEQSYQEGKLTKESYEQLRVEIDK-----QTKFLAEHEKTLVVPTAAIKPAPEPEVSTVKSIDKEEKRVESKKQEAASQTNYHTKANIVKNQNQTIVQAPR-TSSPGPGI</Hsp_hseq> + <Hsp_midline>D+ +++EL+AE +E+ GN N +N+A TEL+AEA+E + + +K ++ + KLS+ A L++ A +K + + S T + E++ P G + I D F + E + D++++ ++ D +GD ++ + GFK TIS+ D ISSMLFKYT+TA+ AKMAA++ +L++ D+L HF +WT F N+ EF + G +++ G++ D+ ++++ +++ + V + +G D + + +M +G++K+ A+IL ALG + A ++ SA+ G + S+++++ + + + + E+ T A +W + K++ D+ET + K EKRE+ + I +N R + ++G +N T+ + L K N ++S + ++ + + E+DK ++K+ E P A PA + V++I K E E K+ +T+ N V N ++TI Q T++P PG+</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>41</Hit_num> + <Hit_id>gi|66391985|ref|YP_238910.1|</Hit_id> + <Hit_def>baseplate hub subunit [Aeromonas phage 31] >gi|62114822|gb|AAX63670.1| gp29 [Aeromonas phage 31]</Hit_def> + <Hit_accession>YP_238910</Hit_accession> + <Hit_len>566</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>144.05</Hsp_bit-score> + <Hsp_score>362</Hsp_score> + <Hsp_evalue>1.01075e-33</Hsp_evalue> + <Hsp_query-from>44</Hsp_query-from> + <Hsp_query-to>569</Hsp_query-to> + <Hsp_hit-from>36</Hsp_hit-from> + <Hsp_hit-to>562</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>150</Hsp_identity> + <Hsp_positive>269</Hsp_positive> + <Hsp_gaps>53</Hsp_gaps> + <Hsp_align-len>553</Hsp_align-len> + <Hsp_qseq>DVQSANELVAEVIEEKGNNL------IDSVDNVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQA--VEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKDDKKPTDMLGD-LLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKR---EETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPA---------TKKELDKRFQRVESKYQKLKEDNTPKPAA---PATSEDNQRVQNIQKAENAKE--QSKKSTGDMNVANTQVNNV-NNSKTIHQVQTVTATPAPGV</Hsp_qseq> + <Hsp_hseq>DSLAAQELIAETVEQGNNELRQIKANTASLHDTAAATELSAESTEMSNTILREISETGKQTFSKLSEFAERLKGSFSADDVEQAPIRTASSSDQAIQIINEENPEPENPLVG-----YLRTISEDIKFLRENKNEPSDPKDPDVVPDDKDDLKTMIDRIGDQIVKSVDSGFKRTVNIADSISSTLFKYTITAALNFAKMAALVLSLIIAFDVLSRHFSHWTQMFQEQYAEFKETLGSFGTPFENLTGIVTDLVNYFKSDEYLKMFVRLAEGAADQMIYIVNMMMVGLAKLGAAILRALGADDKADTLEASAISVATKTVGYTPSEEEEATIGRVRKRQAQE---------EAEQSEASWWEKKKREWDG-----KPIETDEEKAVRERKKSIAENTTAEQFGKHDALSQKIQHVGVTAEKNETSNELLGKHRELLEKRASDVEQAKQSGEITTESYKQLKVEIEKQREFLDAHEQKL-----LKPKASIKPAPEPEIGVVGSIAKEEKRVEASQTAKQEAASNY-NTNANIVKNNNQTLVQAPR-TSSPGPGI</Hsp_hseq> + <Hsp_midline>D +A EL+AE +E+ N L S+ + A TEL+AE++E + ++ ++ KLS+ A L+ A VEQ + +S+ + +I ++ P+P+ P L + ++ E+ P + + D K D K D +GD ++K+ GFK T++I D ISS LFKYT+TA AKMAA++ +L++ D+L HF +WT F + EF G +G +++ G++ D+ ++++ ++ + V + +G AD + + +M +G++K+ A+IL ALG ++ A T+ SA+ + G + SE+++ + + + ++ +E E + W ++ + D + ET KA+ K+ E T +Q A+ + +++G +N T+ + L K +K SD + Q K E++K+ + +++ QKL KP A PA + V +I K E E Q+ K N NT N V NN++T+ Q T++P PG+</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>42</Hit_num> + <Hit_id>gi|37651664|ref|NP_932538.1|</Hit_id> + <Hit_def>baseplate hub subunit [Aeromonas phage 44RR2.8t] >gi|34732964|gb|AAQ81501.1| baseplate hub subunit [Aeromonas phage 44RR2.8t]</Hit_def> + <Hit_accession>NP_932538</Hit_accession> + <Hit_len>566</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>144.05</Hsp_bit-score> + <Hsp_score>362</Hsp_score> + <Hsp_evalue>1.1527e-33</Hsp_evalue> + <Hsp_query-from>44</Hsp_query-from> + <Hsp_query-to>569</Hsp_query-to> + <Hsp_hit-from>36</Hsp_hit-from> + <Hsp_hit-to>562</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>150</Hsp_identity> + <Hsp_positive>268</Hsp_positive> + <Hsp_gaps>53</Hsp_gaps> + <Hsp_align-len>553</Hsp_align-len> + <Hsp_qseq>DVQSANELVAEVIEEKGNNL------IDSVDNVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQA--VEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKDDKKPTDMLGD-LLKTTKGGFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFDEFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISKISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKAGEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKR---EETLIKQNEARAAVQRLEKYIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPA---------TKKELDKRFQRVESKYQKLKEDNTPKPAA---PATSEDNQRVQNIQKAENAKE--QSKKSTGDMNVANTQVNNV-NNSKTIHQVQTVTATPAPGV</Hsp_qseq> + <Hsp_hseq>DSLAAQELIAETVEQGNNELRQIKANTASLHDTAAATELGAESTEMSNTILREISETGKQTFSKLSEFAERLKGSFSADDVEQTPIRAASSSDQAIQIINEENPEPENPLVG-----YLRTISEDIKFLRENKNEPSDPKDPDVVPDDKDDLKTMIDRIGDQIVKSVDSGFKRTVNIADSISSTLFKYTITAALNFAKMAALVLSLIIAFDVLSRHFSHWTQMFQEQYAEFKETLGSFGTPFENLTGIVTDLVNYFKSDEYLKMFVRLAEGAADQMIYIVNMMMVGLAKLGAAILRALGADDKADTLEASAISVATKTVGYTPSEEEEATIGRVRKRQAQE---------EAEQSEASWWEKKKREWDG-----KPIETDEEKAVRERKKSIAENTTAEQFGKHDALSQKIQHVGVTAEKNETSNELLGKHRELLEKRASDVEQAKQSGEITTESYKQLKVEIEKQREFLDAHEQKL-----LKPKASIKPAPEPEIGVVGSIAKEEKRVEASQTAKQEAASNY-NTNANIVKNNNQTLVQAPR-TSSPGPGI</Hsp_hseq> + <Hsp_midline>D +A EL+AE +E+ N L S+ + A TEL AE++E + ++ ++ KLS+ A L+ A VEQ + +S+ + +I ++ P+P+ P L + ++ E+ P + + D K D K D +GD ++K+ GFK T++I D ISS LFKYT+TA AKMAA++ +L++ D+L HF +WT F + EF G +G +++ G++ D+ ++++ ++ + V + +G AD + + +M +G++K+ A+IL ALG ++ A T+ SA+ + G + SE+++ + + + ++ +E E + W ++ + D + ET KA+ K+ E T +Q A+ + +++G +N T+ + L K +K SD + Q K E++K+ + +++ QKL KP A PA + V +I K E E Q+ K N NT N V NN++T+ Q T++P PG+</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>43</Hit_num> + <Hit_id>gi|398313739|emb|CCI89086.1|</Hit_id> + <Hit_def>phage baseplate hub [Yersinia phage phiD1]</Hit_def> + <Hit_accession>CCI89086</Hit_accession> + <Hit_len>191</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>79.7221</Hsp_bit-score> + <Hsp_score>195</Hsp_score> + <Hsp_evalue>1.49556e-13</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>189</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>187</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>69</Hsp_identity> + <Hsp_positive>102</Hsp_positive> + <Hsp_gaps>17</Hsp_gaps> + <Hsp_align-len>195</Hsp_align-len> + <Hsp_qseq>KSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKGNNLIDSVDNV-------AEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKVQESGASASTGLSVIEDKLPDPDEPESPGLPERILPPLDDNNNLPDEDFFPPVPQEPENNKKDQKKDDKK</Hsp_qseq> + <Hsp_hseq>KPQEMQTMRR-KVISDNKPTQEAAKSASNTLSGLNDISTKLDDTQAASELIAQTVEEKSNEIVGAIGNVESAVSDTTAGSELIAETVEIGNNINKE---IGESLGSKLDKLTSLLEQKIQTA--GIQQTGTXLATVESAIPVKVVEDDTDRXXVLXYRXLKQLIMILTLI---FSLPLSQLSQ-SKNHQKKNRKK</Hsp_hseq> + <Hsp_midline>K + M TMRR KVI+D+K ++AA +AS+ + L I KLDD Q+A+EL+A+ +EEK N ++ ++ NV G+EL AE E K + ++ KL KL S+LE K+Q +Q++G +T S I K+ + D L R L L L F P+ Q + +K QKK+ KK</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>48094830</Statistics_db-num> + <Statistics_db-len>17186091396</Statistics_db-len> + <Statistics_hsp-len>153</Statistics_hsp-len> + <Statistics_eff-space>4157067357738</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +</BlastOutput_iterations> +</BlastOutput> +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/blastxml/blastn-gene1.xml Thu Mar 28 04:51:06 2024 +0000 @@ -0,0 +1,128 @@ +<?xml version="1.0"?> +<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> +<BlastOutput> + <BlastOutput_program>blastn</BlastOutput_program> + <BlastOutput_version>BLASTN 2.2.28+</BlastOutput_version> + <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> + <BlastOutput_db>/opt/db/nt_aug2015/nt</BlastOutput_db> + <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> + <BlastOutput_query-def>Merlin</BlastOutput_query-def> + <BlastOutput_query-len>58313</BlastOutput_query-len> + <BlastOutput_param> + <Parameters> + <Parameters_expect>0.001</Parameters_expect> + <Parameters_sc-match>2</Parameters_sc-match> + <Parameters_sc-mismatch>-3</Parameters_sc-mismatch> + <Parameters_gap-open>5</Parameters_gap-open> + <Parameters_gap-extend>2</Parameters_gap-extend> + <Parameters_filter>L;m;</Parameters_filter> + </Parameters> + </BlastOutput_param> +<BlastOutput_iterations> +<Iteration> + <Iteration_iter-num>1</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>Merlin</Iteration_query-def> + <Iteration_query-len>58313</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gi|451937967|gb|KC139519.1|</Hit_id> + <Hit_def>Salmonella phage FSL SP-030, complete genome</Hit_def> + <Hit_accession>KC139519</Hit_accession> + <Hit_len>59746</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>9779.15</Hsp_bit-score> + <Hsp_score>10844</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>35381</Hsp_query-from> + <Hsp_query-to>53427</Hsp_query-to> + <Hsp_hit-from>22789</Hsp_hit-from> + <Hsp_hit-to>4832</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>13209</Hsp_identity> + <Hsp_positive>13209</Hsp_positive> + <Hsp_gaps>547</Hsp_gaps> + <Hsp_align-len>18276</Hsp_align-len> + <Hsp_qseq>GCCACCTGCTGACGGTACTGGTCGATTTGCTGCGCCAGTCCGGCAGCCGCACGGTTCGCCTCGTTCAGCAT-CTTCGTCTTCTGCGCCAGGTCCTTGATGGCGTTGCCGCTGGTCGACACTTCGGATGCGAGGGTGTGGACTTGCTGCTGCAGGCCAGATAGCGTCCGGCGCGCAGCGTCTGACGGACTTATGATTTGCTGGATTTTCGACGCCAGTGGCCCCATCTGCGACGTGGTGGTCTGCACGACCCGGCCCAGGGTTGAATACCCTTTTACCGCCGCCAGTGCCTGCTGCGCTTGCTGCTGCAGACCCTGTATGACTTTATTTTGGGCGGCCGCCGCAGGCGCGGTGGCGATGATGTTTTCCTGCTGCTGCAGTACCTTGTTAACGCTCGCCACGCTGTTAACGATACTGGACTGCGCGGCACCGAGCGTTTTTGTCTCAATGCCATATCGTTGCAGCTCTTTCGTTGTACGGCTCACCTGCGCCGCCCGCGACGCCTCGGTGCGCTCTGCACGCTCTACCTGCCGGTTAACACGGGCGAGTTCGGCTTCCTGTTTTTTCGTTACCTTCGCGGCAGAGTCATACGCTTGCTGCAGCTGGGCTTGCTTGGCCCGTAAGTCTTCCGTCTTTTGCGCCGCTTCAACCATCGTGGCGT---TCTGACGTTTATACAGCTCCACAAGGGCATTCAGCTTTAACAGCTGCTGCCCGGCCTGCTCAAGTTTTTTGTACGAGGCTTCCAGCTGACGCGTCGAGACTTCGCCCCGTTCTGCCGCTTTACGCTGGTCGTCCTGCGCCTTCGCCAT-TGCTTCAATCGCGGAGGCCACGGCTTTAAGGGGTTTCTGGCTGAAATCCCTCGCCCGGATCCTTAGTTCGACGTCTTTGCTGTTAGCCATCGCTCAAGCCCTTAATCAGTTTTTTGTAGTGCGGGCCACCTTTCTTCCCGTTCATGACGGAGGC----CAGTAGCGCCTGCAGTAACGTGCTTTCCGTCACCATGTGCATATTCACGCGGCGCCGGGCAATCTTGATTTCAGACCACAGGTACCCCAGCGGGTACCGGCGTGCGTCTGGGTGTCCCTGAGACATCAGGAAGGACACGCCTTCCCGCAGCTCATTGTGAAACCGTATTACTTTTTCCCTTTTGCTGTAGACTCGGGTGTCAGGCCGGCCTTTGTGTCCCTCATCAGG---------TCCATGGCCTTCCGTAGCATCTTTTTTATATCTTCAACGTCCGAGAAGGTCAGGCGGCCAATGGCTTTCAGCGCGTCAATCTGGGCGGTCAGCGGGAGGCG-CTGGGCTTTCTCCAGGTTGGCTTCGTCGTCCGCTGCCAGCGCGATGATATGGGCTACCAGGCCGGGCGCATCGTTAATAAGGCCCATGGCGAATTTGCCCATGGCCACGTAGGAAAGGTCGCTGCCGCCGTGGGTTTC--GTAAATATCAAACAGCCCTTCCAGGTCGTCATAGTGAACGCGGACGATCTTCGAAATGTCCTGGAATGACAGGCCGCGGACCTCGAATGCAACGTCGCCTTTTTTA-GCG-CG---CTTAATGATGATCTCTTCGGTATCCGGGGTGAAATCTGACAGTGACATGGG--GTTTATCCTCTTCGTTGGTTGACGTCGTTAATGTAGCACGTCG--GCAGAAAAGCATAAAAGAAAAGCGCCCGTAGGCGCTTTC-CGGTATGAC-TGCGGT-CTGCCCTTACGAGAAGGTCGCGGTTTGCGATACTG-CGGACTTGCCGTTCGCCAGCGTTGCCGTAACTTTCGCCGTGCCGGCCGTCGCGCGTTTCAGCGTGGTGGTTGCCAGGCCTGTGCTCGCGGTAGACGCGCTCGCCGGGGTAACGGTAGCTCCGGCGTCCGTGGTGAAGTTCACGGTTTCGCCCTGAACCACGGTCCCGTTGCCGTCACGAACCGTAGCGGTAGCTACGATACCCGCACCGCCGGATGCTGCCGAAGTGCTCGCCAGCGATACAGACACGGTACGCAGCGTCGCCGGGTCAACGGTTGCCGCGGAAGGCAGCACGTCAATGTACAGACGCTGGGTAATGTTGTTCAGCTGCAGCGCTTCGAACGAGAACGACATTACGTTCCAGTCGTCGCCTTTCAGTGCGTAATCCCCGTCCGGGCGC-AGCGCCACTTTCGGGAAGTAGTAGTTTTTGTTGGTACCGACCGGGTTGTCCGCGATGTAACGCAGGGCACCGTATATCTGGTTAGTCTTGCCGATCACCATGTTGCGGTTCTGCGCAGCGATATCGCACTGGATGATCATCTGCTTGTTGCCCGCGAATGCGGTGGAGTCAGGCTCGATGTAGATACGGCCTTGCGCCAGGTCCAGCTCGTAGTTGCCAGCGGCGGTAACGACGGTCACGCCCGGCAGGGAGCTAATGTCGCCAGCGCCCGGGACGATTTC-AGCGTCGCCATCCGCTACGCCGACCACAACGTTATCCACGTTG--AACAGGCCAGTTGGGGTATCGTCACTGGTGCCGATCTGGTAATACTTGCCACGCCGTACCGGCTTGAACACTTCTTTGACGCCAGTCTGGTCGGTCAGGGTCATGTTCACCAGGTCGCCAAGGAACCACAGCGCCAGGTTCTCTGCCACGATGTTGTCGCAGGTGAAAGTCCCGGTCATGCCGGCTTCCAGCAGGACGGAGGCGTCTTTTACACGCAGGCCGTAATCCGACGCATAGTGGTCCAGGTTTTCAGTATCAGTGGTGATCGTGAATTCCGGGCCGTTGCCGAAGTACATTTCGCCGGTCTTGCGGTTAGAGTTCGGCAAGAACTTA-TCGAAATAGGTTTTCCCGCGTCCGATTGTATAGTCGTTCTGGAA---ATCGCTTTGCATCTTTCATCTCCTGTTAGGGATTCCGAATATCTACTTTTAGTCCTACCCTAATAGGCAGGAAGAAAAACGCCGTGTCCGATAGTCCTTCCTCGGGCGGACGAACAACCGGCTGTGCGAGTGTCAGTGTAGCAATCATTCCCTTCAACCGATAGACCCCCGGGAATTCCGGGTTTCCATTTTCATCCTTCGAGATGAGCATTGACAGGCGCTTTTCGACGACTGCCACGATGTCGTAGATCGGGTCCGTTGGATTGCGCGCGTCGTCTGCGCACCACCCCTGAACCAGTAGCACCCAGTCATCCATCCGGACGGTCTGTTCCTCGTTAGCGAATTTCCCGTAGTCGGTTGCTTTCGCTTCCAGAATAGACAGGAACGGCATTTTTGCCACGTATTCCGCGCCGAAACGGTCCCGACCGCGGTACACCTTTCCCCGGAAGTCATACGGGTACCCGTTATCCGGGGTGATTCCTTCCAGGAAATCCGTTAATGCTTTCAGCACATCGAGGCGCTTACTCAT---GATAATCTCCCAAAATTGCGGAAGAACTCTGTCGCCACCATGTCAGCGATTTTCGGCCCGACTTTGTCCGCCACGGACGAAAATACCTGGTCCACCGATGGCGCATACAGCAAAGCCACCTTATTCGGCACCAGCCATGATTTGTGCTGAGACCGTTTGTTTGCCAGCGATTCGCCGGCAGACAGCCGTACCGCGAGGCCGACGTTAAAGTTATCCTCGCTAAGACTCGCCCCTTTGTTCAACCGAACCAGGAACGCGTTCTTTAGGTACGTCGTCTTCCCCCGTTTAACCCGTACCGCTAACCCTTCCCTGCGGCGGCTATTAACCACCGTGCCACTG---GTCACGAACCTTGCCAGGGATGTCGCACGCTTGCGGCCTGTAATGGTCGCTTCGAGGTTGGTTTTAGTGGCCTTTTTGGTGACTTTCAGGCGATCGGCATTGAGATATCCGGAGGGGAAGGCGATTTCGTTAAGCATGGTTTTCTTGGCCAGTGACATCCCGCTACGGGTTGTGACCGTGTTAATGGCCATCTGCATTGCCAGGGCGGCCCTTTCCGGAAACA--TCCGGAAGTATTCCAGTATCTTCTTGTCACCGACGGAAATAACGTTAACGGCCATCAGTTCTTCCTCGACACCTGCCAGATCACTTCGACCGGACCGACAATCGGTTCCTGCGTCTGCAGCACCAGGCCAACGTTGCCGTATCCTTCCGCCTTGATGATAATCACGTCACCGCCTTCCAGCGTGACGCCTTTCGCCTGCAGCTCGTCCTGCATAAAAACGATTCGCTCGATGCCATCGATAATCTGGGCGTAACCGCCACTATCCAGATCGCCGACCAGCTGCATCTTGTTGTGCCAGCGCACGCTAAGATCGTCGACGATGACTTCCTGCGAATAGCTTTCATACCGCGCAGATACAGACAGGGACGCGTGAACGTCCCTGCGTGCCTTCGCTTTGATTGCCGCGAAGTTAGAGGCCATA-TCAGACCTCTTCGTCCGCTGCGCCGGCCTTACCGCCTTTTTTGGTGGTGGCCTTCGC---GTCAGACTTTTCTTCCTGCGCAGGCGCTTTTTCTTCCTGCGCAGGCGCTTTTTCTTCCTGCGCAGGCGCTTTTTCTTTCTTCGCCTGGTCTTCCGCATCGACTTCGATGATCGGACGATCGAGGGCGCCCGGGTTCATGCTGTTAATGGAGTCCAGCTCTTTCTGGGTGAAGTTGAAGATTTCACCGATCGCTGGGCGGATACGCTGGCCGTCGCGGAAAACGATGACCGTCTGGACTACTTTACGTTGTGGCATAATCTCTGTCCTTTAAATTGGCCCGCCATTATTGACGGGCC-------------TGCAGGTGGTTACGGAACGACGGTCAGCAGGAACGACGCATTCGGGTCTGCCGGGACCATCAGCGGTGCGCCCTGAGTCATCAGGTATTCCACGCTCGGGTCCTCTTCTTCCCACATTTTCGGGAAGTATTCCAGCGCCCGATAGCCGGCCGCTTTATCCATGATTGCCCCGAAGCACTTAACGCCTTCGATCGCAGACGAGATACCCATGACGGCCTTCTGGTTCATCAGGTACTGTTCCTGATTTTTCCAGTCGCGGAATTTCTGAGTGTTAACCCAGAAACGCATACGGCCGGCGCCGTTGATGCCTACCAGCTCACCCATGAGCTGAACGCCTTCGACATCATCCCACAGACGGGTCAGGTTAGAGTCGGACCCACGGATATTGCCATCCATCAGGCCGTCTTTGCCCCACAGCTCTTTGCCGCCGACTTTAACGAACTGGTCCCATGCGTCGCCGCCGAACACGTAATCGCGGATCACCGTGCCGGAAAGTGACTTATCGGACACCAGACGCTGACCATCGCGCAGGTCGGCGATCATGTCCATCAGGGTAACGCCGGTAGCGGTCCAGTCGGAAGTCATGGTCAGCGCAGCATCGCGGCCAAAGTCTACGCGGGTTTTCGGGTAATCCTGCCCTTCCACGTCAACATAGCCGTACTGCGCAGCCTGCGCTGCCATCCATTCCCAGGTGTTTTCGTGCATCGCGCGGTGCTTCATCAGCAGGAATGCGATAACACGGTCACGACGCTGCTCGTTAGACAGGCTACCGGTACCGAGCGCTTCGCCAGGTTGACGCGGAACAACCATGTTCGGGTCAATAACGTGCTTCGGTTTCACGTAAGCCGGTTTGAAGGTCTTGGTGTTGTAACCCTGTTCCTTGATCACACGGCCTTGCGCGGTAGGTGCGACAAACGGCGCGACGCGGGTAACGTCCTGGATGACCTTATCGAATGCGATCTGGTCTTCCTCGAAGTTAATCTGGCGCGGGAACCACTGCAGGAAGAACGCCGGCAGGGACTTCACCTTGCGTTGCACTCCCATCAGGACGGTAGTTTCGTACAATCCAGCCATTTCTGCTGCTCCTTAGTACAGGTTGCCGATGTGGATGTTCGTACGTTCGAACACCGCCTGACGTTTCAGCAGGGTATTGACTGCTGCTGGCCATACGAGTGCTTCGTGGTTGAACACACCACCGATGTAATACGGTGCGTAGGTTCCC-ACGACACCCGCTTCGTTAGCGATACCGATGGCCGTCGCTTCCGGGTTGGCCGGAGTGGTCGGGTCATAAGGTACCAGTTTGCCAGCTGCGTTTTTAGCGATGACCTGATAACGCGCAAAC---GCGACTGCGACTTCACCGCCGTCGGTTACGATATCAGCTTCACCAGCAAACAGCTGAGTGGGTTCCCACGAACCGAGGTCGCCGTTGCCAGCGAGATAGTTCGGGAGGCTTG------CCATCATGGAGATCAAAGA--CATA-GTAG-TCGCCTCTTACTTAG---TGAACGAGTCGCCAGCTACAGCGGCCATCGCAGCCATCAGGCCATCAC---CTTTGCCGGGTTCAGCCTGCT-GTT--CGTTTTCCGCACCCATATTCGGGTGGTCAGCGTTATCCATCACCGTCTTGAACGGGCTGTCCGCC--CCTTTCTCTGGCTGATTGGTAGCCGCTGCGGCTGCC---GGGGCC-----------TGC----------TCGACCGCAGAAGCGCCCAGCATGGTTTCAGCATCGGCAACACTCATTGCGGTGTTGAACGCAATATGTGACGCCAGTTTTGAACGGCCTTTCGCCGCT---TCGCATCCCAGAATACCGGAAATGCGATTACGTTCCGCCGTAGTCGCTGCCGCGGTCGCCGTGGCAGTTGCTTCGGCTGCTGCTTCTTGACGGGCAGCGTCCATTTGTTCTTGGGTAAA---CATCGCGTTTGCTCCTGGTTGTTCATCCGAGCC---ACCGGACGGCCCGTTTAGGAATTCAGCCACTGCCTTAGCCGGCGTTGTGACCGCATCTATTAGTCCGAGGGCCAGTGCTTCTGGGGCGTTATAGCATAATGCCTCGGTGTCACGCACGACTTTCGGATCTAAATTTCGGTTTTGTGCGACAAGGTTGACGAAGTCTTCACGCATGGTGTCGACATCTGCCTGCCAGCGGGCCTTTGTCTCATCCGAAAGCGTTTCGAACGGGTTGCCGTCGGCTTTGTGCGCACCGGATTTAATAATACTAACCTTAACGCCGAAGTCTTCCAACATCTTACTGATATCGACGTGCATCGAGATAACCCCGATGGACCCGGCGCCGCCCGACGGAATGACCGCCATTTTCGTCGCTGCGCTGCCCAGGGCGTAAGCCGCAGAGTACGCA-TTGGAGTCCACGACAGCGAATGACGGCTTCACTGCGCGGGAGGCGAAAATCTCGTTCGCCAGCTCAAAACAGCCCGCTGCTTCACCGCCGTTAGAGTTCACGTCGAAAATAATAGCTTCCACGTCAGGATCTGCCAGTGCGGCGTTCATCTGCGAGCGGATGAAATTGTAGCCCGTCACGTAGCCATAGTAATAGCCGCCGTAGCGGTTAATCAGGGAACCGTGGATCGGGATAATGGCGAAGCCGCCGGAAAAGGCGAAAGGCTTGTTTCCGC---TCGACGGCGCCATGCCGTACGCCGCGCATAGATTGCGATTGCGCTCCGCGGCGATACGTTCTTCGGCATCGAGGTCAAAGTCGTCCTCATC---GGCGCTCATCTGGAACACCGACTGGATATTCAGCAGGAAATTGGTGTCGCTTTCACGGACTGCTACCGGCGACCCGTTCATGCG-CTGAACCGCTTGCATTAAG---CTGGATCGAACATG--TGCATTCATTGGTTCTGTTCCTCATCAGGGTTATCAGTCGCCGACGAAGA-AGATGATG---TCGTCTCTGCGCCTTCGACAACTTTACCTGAAAAATCCAAATCCAGCGATTTAATCAGATTTTCTTCCCGCGCGCGCTGCTCAAACACCGAACGGAAATCGCCACCCAGGCGCGCAATTTCGGCTTCGTACGTTGACAGGCCATTCTTGATACGCAGGATCGCGGCTTCGGTTTCTTTCTTCTCGTCAATCTGGCCACGGCTGGCACCGATCCATTCCGCATTGCAAATCGCATCACGGAACATCGGGTCATAGAAGTCGCGCCAGGTCTTGCCCGGAGGCAGCGGCACATTGCCGTCGTTAATCTCTTCTTCCAGCCACAGCGTATAGACCATGGACGCGAAGCGGTCGGCCACCAGCTTCTTACGGCTTTCCATGAACTTCCACGTTTCCGCCATCGACGCACGCGCAGAACTGTAGTTCGTCTTCGTGTAGTCGCGGCTGAACTGCTCATAGGAAAGGCCAAGCGCCGCGGCGATATTGCGCAGCAGCGATTCTTCATAGTCGGTACCGACGCCACCCGGTGTGCCGGCAGGTTTCAGGTTGAACTTCGTTCCCGGGAAGAGGTGCGGGACTTTAACGCCGTCGATCGTGATGTTCTTCGACGCGGCGACATACTCGGCCATACTCGCCATGTAGGCATTGAAGTAGTC-CGAAAAGGCGGTCTGCCCCATGCCCAGCTGCGCGAAGACTTCCTGCGTCGGCAATTCAGATTCGATAACGGCGGCATACGTCGCATTAACGATGGCATTCTGCAGGGTGACTTCCTGGAAATTACGGGTCATCCGCATCTGCTTCAACGCCGACACCATCTCGCTGATCCCGCGGGTCTGCCCGGGCAGCAGCTGTTCGATGATGTGGATAATGCGCCGGCGGCCCCAGTCGAATCGTGCTGGCTCGCGCTTCCAGCGCCACTGGCCGTCAATGTTGGTGTAGTCTCCCGGGAAGGCTTCGCGGAACCAGTACGCCTGCGGGGCGCCATACTCGTCAATCTCGACGCCCTTACG--GATCCG-GTCGGTATCCGCCTGCATGTCCGGGTTCGACAGACGATACGGCGAGATAAACTGAATGGCGGTACCGAATGGCCGGCG--GCCTGACGCGCCACGCCCGGTAGACTTGACCCACTCGGCAGACCCCAGCACTTCCCCGGTCATCAAAAACCCGCCGACCGCGAGGCGAACCAGGCCGGTAAACGTGTTGACGCGCCGGGCGTCGAACCAGTTTTCCGGTGACTCTGCAGCCATGTTGAACCGGGATTCGACGATAGCCTGGAAGTCCTCCGCCCAGCCGTCCGGGGCGCCAAGTATCAGGGAATTAGGCTTGGCGTTCAGCTTGTACTGCGACCCGACAATGCTGTCACGGTGGATCGCCACGGCGCCAAAGGCGTAGCCGTCGTTCTGCACCATGTCCTGTGCGCGGGCGTCGGCCAT-GTCCTTATCGCGGGCGATCTGCTGGTCAGGCGAGATTATCGCCGGATTCCAGTTGAAGGTTGCGCGGGTGTTTCGTTCAGCGCCCTCAAGGCCGCCGCCCGCTGC---AGGTTTCGCCGGAGAGGCGTCGACCGTAGCAACC---GCGGTTTT-----CTTGCG-CGCGCGA-GTG----GCTT-TCTTGACTTCGCTCATCAGAA-AATAAACCTCGCTGGGCGACTCGGCGTGCCGAAGAAGGCGCTGCACGGGTCGGGTGAGTTAATTGCGTTCTGCAGTCGCAGAATATACGCCCACAGGCTCTGGCGGTTGGCCGCCGTATACTCTACGCGTTCGCCGTTCTGATCCACCACAACACGCACCGAACCACCGACGTTCAGCTGGTTATAGGCGTCCATAGCGTCATTCAGCCATTGTTGGTACTTGGCTCGGCATTCATCTGGGGTCATGGTGGTCATCCTCATGCTAAC---ATTTCGGCCAGTTGCGCAAAACTATAACCTGTATCTGGTTTTTCTGCGATGCCATCTGGTTTATCTA----CTGTGACC--ACCAGCGGGTTTTTATCCCACTCGTCAGCCCACACGGGCGGGTTATCCCAGTCTATTGCTTCCATCGCGAGGACACGCCCGCTGATACACATCCCGATCAGATAGTAACTCAAGTCCCACGTTTCGTTTCGGGTACCCTGCGGGCATTGCCAGCCTTTTTCGTCGCGGTGCTCGGCGCACATCTCGCC--ATAC-GCGTAGTCCGGAAGCCAGGTCGGGAAATGATACATGCCTTTGCCGGGGACCGTTACATCCAGTCGACCGTTAAGCATGTCTTTCACCATATTCGAGTTTATCATCAGCACCGGGACGTCGCCGCGCGCGATCGCGTTTTTGTCCTTCCGGTTAGAGTCCGGTGTCGCGATATGGGTACGCGGGCTTTTCGGCATCGGGTCGCCTTTGACCAGGATGAATCTCCCGTTTTTCCCCTCGCGGCGCAGCTTGCGATAATACTCGTACGCATTGGCCGTTACGCCTGCCGCACCACCGGAGTCACAGGCCGTCATCTTGACCTGCATCACGCGGCTGGGGTCATCGGCCAGCGGATAGGTCTTCATCATGACCTGCTTCTCGATCAAATCCCAGTCCTCCAGGTACGCCGCCGGGCTTAACTTCTCCCGCTCGCCGTCTATATCGAGACGTTCGGATTTGATGATGTTGAACCGGTCTATCAGGTAAATATCGAACGGGTACCCCGGCGCCACGCCGAAGACCGCCACCTCAAAGCGGTGTTTCTGGACGTCGACCGTCGCCGCCAGGAAACGCACCGCGGGTGGTACCGTTTTTTCCGCCCACGGCTCCGCCCGGGCTTTCAGCATTTCCGGAACACGAACCGACTCGATCGACTTCGGCACATACGGTTCGCCCATGTCGTTGTTCCAGAACTTTTTCAGTGACTCTTCCGACATCGTGCGCTCATAGTCGTCGGACGCATCGAGGTAGTTCAGCACCAGCGTCTGCCATGAGATAAACGCCGCCGCCGTACCGCGCAGCCAGAAAGACGCGAATGTCGCCCGAACCGGCTCGCCGACCAGTTGCCCTTTCTCGTTTACCGTACATCCTTCCGGTACCCACATGCCCCACAAATTCATCTCGTACTTCTCTTCCGGCGCGATTTCGCAGCCGCAGCATGGGCAGACCATTCTGGCCGTTTCTGCTTTTTCCAGGTTGGTTAGCGTTCGGCCATCGGCGGACTTGGTGTCCCACTTCATCAGCTGGAACGTTCCTTCGAAATACTGGTCGCAATGAGGGCATGGCCATTTCCAGCGCCGGCGGTCGCCGCGATTGTAAAGCCCGACGATGCCGTCGCACGGTGGCGCTTCATGCGGCGTTTTCTTGATCCAGTTTGGGTCTTTTACCGGGCGGGACGGCGACGATTCTGCCGCGCACATGGCAAACGACCCGAAGGTCGTTGTACGTTTTGACGCGAGGTCAAAGGCGTTACCATCGCCACCGATGTCATCGTCAATACGGTCATAGTCGGTGATGATGATACGGCCAACCGGCCTCCCCGCCAGTTCCGTAACCGATGGGTAACTAAGCGTCAGGATGATCCCGGTGGTGTAGTGTTTGTCGAATTTGTTATCGGCATCACGGTTCTTCATCAGCATGGCGCCTACTTCCGGGCTGTGCCGATGGAGTCGGTCCACGCGTCGCATGGAGAAGTCGCGTGCGGCGGTAGAAGTCGGGCAGAACACCATGATATCCATGGGGTCCACTTTCACCGAATAGGTAATGCCGTTGAGGATCAGCGCATCCGTTTTCCCGCTCTGCGCCGGGCCTACAAACGCCATTTTGTTGTAGTGGCGGCTGTTCAGCGTGTTCATCGGCTCGACCATGTACGACGTGGTCATATTAAGCCAAGGCCCGACATATGCGCCTGGCTGATTCACGTAACGGTATTTGGCGGCCGCCTCGGCGACCGTCATGCGCATTGGCGGCCGCAGCTGACTGCCGACCGACCGGATGATGTGGTTTAACGAT----TTAAACTTCATCGTCTTCTTCCTCCGCGAACCGT-----TTTTC---CAGGGTATTCGCGAGGTCATCCAGTATTGAATCTACCGATGACTGCACCACGTTGCGCTGCGCTTCGGTAAGCCCTACCTGCCGCGATAATGTGTCGGGGATCAGCAGCAGACTCATTCGCAGCGTTTTGATAGCTTCGCCAAACACACTGACCACGTCTTCCGTTGGCCACAGGTTCCCTGCGCGCAGGTCGTACTCCTGCTTCGCGCGCTGACCGTTCCAGAACTCCTTCGACAGCTCTTTGGGTAGGTCTTTGAAGTTCATGCGGCGCAAATACGTCTCGACGTCGTACAGCGGTTTTACCAGGTACGGCGCGACTTCGTGGACCGCGTAAATCGGGTACCCGCCGCGCTCCCCGACGGGCGGGACATCCATGATCTTCGGCGTGATGTCCCGGCGCTCCATGCGGAACAGCTTCGCCAGTTGCGTTATGTTGCATCCCTGAAAAATCATCGCCTCGGTATCAGCGTCCGGCGCATTCGATCGCCGATTGCGGGTCGCCAGCGGGGCAGTTTTAGTCGTCTTCGTCATCCCATAGCTCCGTTTTCTTAGCCTTCATGCGCTTAGTTATGCGGCCTTTGATGCGGTTTAGCAAATCAAAAAAAGCATCTTGCACATCACCCTTAGTATTTAGCGCTTCGATGACGGTGCCGTCGACAGTGTCGATCAGCTCCTTCGTTTTCGGATGGCGGATCATCGCTTTCATCTGATAGACCGTCACCGGGTGCTTCTGGCCCTGACGCGCCAGGCGGCCATTGAATTGCAGAAACCGTTCAAGCGACCACGGGTTATCGACGTATACGATGATGTGACCACCGTGCTGCAGGTTAAGCCCATGGCCGGCGGACTGGGGGTGCGCCGCCAGCAGCTTTATCTTGCCGGCGTTCCACTTCTTAATCGCCTTGCCATCATCGTCCATGACGACCAGACCTCTTTTCCCGAACCGCTCCTGCAGGCGGGCCAGAGTCGGCTTAAAGTGATAGGCCAGAAAGACGTTTTTCCCCTCCAGGGTGGTGTCCAGTAATTCTTCCAGCGCATCAAATTTCAGATCGTGAATTCGATACGCGTCTTTCTGCTTCACGACTTTATCGTCACTGGTGATCCCGACGATTTTGGTGTCGTAGATGAATCCGGACGCCAGCTGCAGCAATTTGGCCTGGAGGGACGCGGCCTGCTCGGCTTCAATCGTCAAT-GGGTCATCCAGATATTCGTCAAATTCGTCGGGCATGAATTCGACAAGGGATTCTTCTTCCATCTGGCGGTACAGGTCGGCGGAATGCGGGTCCAGTTCGACCGCGACCGGAACCAGTTTCGGCTTTTCGAGATCGAGATAATCTTCCGCCTTCATCACCATGACGATGTCGGAGATCTTACGGATGATTTCTTCCTCGGCCCCATTGCGTAACTTGAACTTGAAATTGTACCGGTTCTGGATGAAATAATTTTCCTGATACCCGGTGATCGTGGTGCCAAAGCGCTCGCCTTCGTCCAGCAGGTACGTCTGCGCGAAAATGCCCATATACCCTTCGGCGGCAGGGGTTGCAGTCAGCTCCACCAGGTAGTTTATGTACGGCCGGCAGCGGCGTAGCAGCTTGAACCGTTGCGAGGTATGCGACTTGAACATGCTGGACTCGTCCAGGATAACCATGTCGTATGGCCATTTCTTTTTGAACAGCGTACACAGCCACGCGAGGTTATCCACGCTCACCGTGTAGAAATGGCAGTCCTCGCGTGCGGC--GCGCTCGCGTTGCGCTGCATCACCGTCGATGACCGATATCTTCCAGAAGCAGAGATGCCCCCATTCCTCGAATTCGCTTGGCCAGCCCACTTTCGCAACGCGCTTTGGCCCGACGATCAGCACTTTGTTAACCTTCCCGTCGACGATACGGTCCAGCGCCGCGGTAGCGGCCATCACGGTCTTGCCCAGTCCAAGGTCGACGAACAGGCCACAGAACGGCGTTCCTTTGATGAAGTCGACGCCGTCGTCCTGATAGCCGTGCATGTCCGACCGCTGGTGAATT--ACGTTGCGCTGGCAATACGCGATTGCCTTACTCAAAGGCGATAAGGTAGTTCTTAAAGTCTTCAAAATTGTCCACCCATGTCACGTTAGCCCCTTTGGCTTT---CATCTGCCGATGGCGGTTTCGCTGCTGCAGCGTTGGTTCTTCGCCAGGTCGCTTGAATTCCACAAAAAGCACAACGCCATTCCGGATAAAAACGCGATCCGGAACGGCCTTTTTCCCGGGTGCCGTGAACTTCGACACCCACCAGCCGCGGCCCTGCGCATACTCGCAGCAGCGGCCTTCGACCTTCGATTCCCTGACGACAGGGGTTCCCCATTCGGGCATTAGCGGTTTCTCCGGCAAGTATTTGATTTCTATGCAAATTAGTCTTTGCGATAAAAGAACCCTTCCCACCCGGCGGCGCCAAGCGGTAATCCGGGCGCCCATGGCAGTTTCGCCGCCATGCAGCCGATCAGGTCAGCAAGGGTTAACGGGCTGTCTTCCGGGACTTCGGTAACGATCTCATCGTGGATATGCATGACGATCTTAAAGCCCATCCGATGTGCCTTCTTCATCCCTTCGGCGAGGACGTCACGCGCCAGGGCCTGAACGATGTTTTCCACAAGTTTTCCACCGTGGCTGAACACCTTGCCCCAGGACGAACCGCCGGATTTTTCAATTTTCCCTTCGTACTGGAAGTTCAGCGTGGAGTATTTCTCGCCTTTACGTGGGCCGC-TCTGGACCGTCATCTGGCGTTCAGCGATGCGCGGGCGGAAGTAGTACATCTTGCGGCCTGACGGCAGCTGAATAGTCAGGAATGGCTTGGTGTATTCGATGGTCAGGCACTTCCACTTCACCGGGCGATGCGTACGGATGACCTGGAAGACACAGTTTTCCAGTTGCGTCCAGGCGTTCACTATTTCCGGGCATAGTTCACGAAACGCTTTCACCGAATCCGCGGCTTCTTTCTGGGTCATGTGAACGCCCATATTCTCCGCGTATCCCCACAGCCCGGTTTTCTTCCCGTCATCGCCGAGGTGGCCGCCACCAAGGCGATAACCTGCACCGAGGGTAGCGGGTTTGGCTTTACTGCGGTGAGGAAGGGTGTCTTCGTACGGCAATCCAAGCCAGTGAGCGGCGAACGAGCGATAAAGGTCATGCTTTGCCGCCAGTGTGTCCATGGACCATTTGCAGTCGGTCAACCATCCGATCACGACAGATTCTATGGATGCAAGGTCGGCAACGATAAATTTATGCCCGGGGGCCGGGATGATTGCTGACCGGATGCAGCCGACAAGGGCGTCCATCGGTTCCCCGGCGAACAGCGCCAGATTATCCAGCTCCCGGTTCGCAATGAACCGGTTCGCGATCGTCAGGTCTTCCACTTTTTCAAGAAATTTCGGGGTGCGCGCGAGGTTCTGCGTCTGCAGGCGGCGTCCGGCCCAGCGATTTGTTCGGCTGGCGCCGGCGAACTGCAGGGAATAACGGAAACGCCCGTCTTCACCGGCGCAGTCGATCATCGTTTTGTATTTGGCGATTGAGTTTTTGGCGCTGTTAAGGCGGGCTTTCAGAACGGTTATCGCTTCATCATCGACGCCGTTTTCTTCCTGTTCACGGATAACTTTTTTCACCGTGTCCTGGCGCACATCGTCAAACGGGTACCCTCGTTCTTTAAGCCACGGTACCAGCTTGGATACCGAGTTCGGGTTTTGAAGGCCGGTGATATCCTTCATCTCTTCTATGATTTGCGGCTTCCGGCGTTCAGCCAGGTCCAGTGCGGCCTGCGCGAATTCGGTGTCGATCATTACGCCGCGGTCATTGATAAGCTGGTCCAGTGCGTATAAGTCCCATTCCTGCG-GCAGTATGGGGTACTTAATGAGCCGGTTTTTAATCAGCATTTCTGTATCAACGTCGCGAACGTTATACCGGCAGAATCCCCACCACTCTTCGGGATCCGTCAGCTCGTTACGCCATTCAAAAGGGTTATTTTTGGTAACACGTTGAGGCACGCAGAACATTTTTATCAGCCGCTTGCCGTCCGTGTCTTTCAGCTGGTCTTCTTTCAGCCCGATCTGCTTACCTATCTGCAGAAGGTCGCCAGTGAAGCCGAGCATGTACGCCAGAACCATCGTGCATCGCCAGGAATTATACGGGGTTTTCAGGCCAAGAACACGGCGGGTCATCACCCTTTCGAATTGTGCATTGAACGCCCACTTCTCCACGTAGGGATCAAGCAGTGCTTCTTTCAGCTCTGCTGGCATCTTCGCGCCACGGGATAGGTCGGCGTGCTGCACCTTGCCGTTGTTAAGGGAATACGCCGCCATCAGGACTTTCG--CATCCGGGCAGCGGGAATATCGGTCCAGGCCTTGCGTTTTGAGATTGGCACGCGCC--CGGCTTTCGTAGTCAAGGTTAATAATATCGGCCATGGTGTC-CTCTTAT---GAGAAAGCCCGCACTAGGCGGGCTTCCGGTTTCAATGCCCGACGGGCTGGGGGTTAAACGTCGTCGTCTTCATCGCCGGCGTCGTCGTCTTCCCAGTCTTCGTCGTCATCCCACGCGTCGGAGGTATCAACACGACCTTCGCCGAACTGTTCGTCATCCTTACGCTTTAAAACGGAGATCAGGTTAGCATTTACGCGTTTGCCATATTTGTTATCCTGGGTCCAGGGTCGGATAACCATGGATACCCAGCAACCGCCGTAAATCTCTTCTTCAATCTCAGCCTTAGTCGTTAATTCCTCGCGCTCGATGTTAAAGACTTCGGGCTTTTTGCTTTCGCGCGCAGAGAGAACCCACATGCCAGCGCATTCCGGTTTGTCCGGGAAATCGACATCGCCGTCTTTCAGGAATAACATGGCCGGCGCCACTTTGAGCGGACCAGCTTTGTGATTCTTTTTGGCGACTTCGATCTGCTCTTTCAGCAGCTGGTAAATCTCTTTGTGCGTTTTCTTCGG---CAGAAGC-CCGACGATGCCGTATTTCGGCTCGCCTTCGCCGTCTCCGCCGTATGGGGCGCCCAGGTGCGGATATGAAGCGCGTACGTTGGAAACTTTGATGTGACCGCTCTTATACAGAACGCCGTTTTTAACTTTCTTCGCAGGAACTAATTTTTCCGCCATTTCTCTA-CTCCGGGTTACGAATTTACGGGTTTACCATCT-------TACAGATTTACACGTCATCGTCGTCATCTTCGTCGTCATAGGCGCCGGAATATTTCTGATCCAGTGGTGGCCGCTTATCAGTCAGCGGAACCAGGGTCGGCTTGCCTTCCGGCTTCCATACGACGCTTTCGATGACCATTGGCGCGCCGGCGCGTGACAGTCCAAGTTTTTCCCGAAGGACTTCTTCCATCTGCGCCGGCGAGCGCAATTCGGTTTTCATATAGTCTTTTTCGTCAAGGCCAAGGAAATCGTACAGCTCCCGGGCCTTTTCGACGTTGG----TATGCACACGGTTAGAGCGTGATTCCACCAGCTTATGCCCGGGAACCTGCTTACCGT--CTTTCGCGGCCCGCTCCAGCTCCAGGTCCAGGCGGGCGAACCAGTTTTCAATCACTTTGCGGTAAGGCAGGATCTTGGCCATCTCGGCAACGGACAGGTCGCCGAACTTAGCCTTCCGCATTTTGTATTCTTCCGCCAGGGCGGCGCGTAACTGCGACATCTCATAATCTCCGAATTCAGCGTCCAGGAATTCGAGGTCGGCACCGACGGCGCATTCCATCATGTACGCCACCGCTGCGCAATTATGCGCGGCCCGGCACCACCGGCATCCTTTCAGCGTCGCCTTGCGCTTGGCTTTGAGTGACCAGGCGGCAGCTGCACGCTCGCGGATAAACTCGGCGAAGTCAAGCAATTCGTCCACCGTCACTTCCCAAACGTCGAAATGCTCAAGCCTCGGCTGTGCGATCCGGATGATGACCCGGTCAAACTCGTACTCGT-CGCTAAATGCGCGGTACGCCCCGTATGCGTAGAGCAACGCCTGGGGGTTCCCTTCCGCGAAAACCTGGACGCCGGTTCCATATTTCAGGTCGGTGACAATCAGCACCCGGTCACGAATGATGATGTTATCCGCGGTACCGCCCTGCGGGAGAAACGGCACTACTTCGGCGTCCGGGTCTTCCTCCAGCTCGTCAGCGTTGGCTGGTGGCATCAGGTCGGTGAACCAGACCCGGATTTCCGTCAGCATCATGCCTTCTTCGAACCGACACCAGTCAACATAATCCTGAACATAGTCGATCATGGAGCGGGTGACGACAATCTCATGCCGAACGCCTTTTTCCTCGATGACCTGCGTGGTTCCGATAAGATGCGTCGGTCGGATGTCCGTTTTCAGCCACTGCTCGGCGATGCCATGGGCGACGGTTCCTTCCGCCGCTTCATAGCTGCACTCGTCATCTTCGAAAAGGTTGGCCAGCAGGCTTCCGCCGCAGGCCGTCCACATCGCAGAGGCCGACGGCGCGAATATCGAATGCCCGCCGCCCGCAAACTCCTGCATAACACGAACCAGAAAGGACTTACT</Hsp_qseq> + <Hsp_hseq>GCCACCTGCTGACGGTACAGGTCGATTTGCTGCGCCAGCGCCGAGACGGTTTTATTCGCCTCGTTGAGCATTCTTACT-TTCTGAGCGACGTTCTCCACTTCCTTGCTATTGCGAGCCAGTTCTGCGGTAACGCCGTGTACCTGATTCTCAAGGCCGGACAGCGTGCGGCGCGCCGCTTCTGCCGGGCTGACGATGGTCTGGATCTGCGTGCCAAGCGGCCCGAGTTGCCCGGTTGCCTGCTGCACCACGCGGCCGAGGGTTTGATACCCGCGCGCCGTCGCCATCGCCTGATCTGCCTGCTGCTGCAATCCACGAATTACCTTCGCTTGTGCGGCCGCAGCGGCAGATGTTGAAATGATTTCGTCCTGACGTTCGAGGACACGGTTAACCTGCGCGACGCTGGTGACGATGCCCGCTTGGGCCGCCCCAACTTTCGACGTCTCGATCCCGTATCGTTCGAGGTCGCGGGTCGCCCGGTTGACACGTTCGGCCTGAGTCGCTTCCGCGCGGGTTGCGGCTTCGACCTGACGCGTCACCCGGGCCAGCGCCCGTTCCTGTTTCTGCGTAACCTTCTCGGTGGAGTCGTAGGCTTTCTGGAGATCGGCCTGTTTCTGGCGGAGTCCTTCTGTCTTGGCCGTCGCCTC---CGTCATGGCCTGATTCTGCCGTTTGAACACCTCGATCAGCGAGTTGAGTTTAAGCAGTTGGTTCCCGGCACTTTCCAGCTTTTTGTATGCGGCTTCCAGATCACGCGTCGAGATTTCACCGCGCTCGGCTGCTTTACGCTGTTCGTCCTGCGCCCTCGCCATCTGCT-CGATAGCATTGGTCACAGCCTTTAGGGGCTTCTGACTGTAGTCCCTCGCCCGGATTCGTAGCTCGACGTCTTTACTGTTAGCCATCAGATAATTCCTTGATTAGTTTTTTATACTCTTTCCCGCCTTTCTTGCCGTTGAGTACAGCGCCGATACAGGACTGCAT-CAGTAAA---CTTTGGGTGACATAACCCGCGTTTACCCGGCGCTTCGCGATTTTCGTTTCTGACCACAAATATCCTAACGGGTAATGCCGGGCGGCCGGGTGTCCCTCGGACATGAGGAAGGACACCGTGGCACGAAGGTTATTGTGGAAGTCGAGAACTATTTCGC----GCTTT-GAC-CGGGTTTCGACACCGCCTCTTCGCCCTTCATCTTGCCGATCTGCTCCATTACCTGAGCGAACATCTTTTTTACTTCTTCAACGTCCGAGAACGTCAGTCCGGCAATCTTCTTCAAGGCGTCGAATTGTACCAGCAG-GGGAAGCGTCTGAACCTTTTCCAGTTCGGCTTCTTCGTTAGCGGCCAGCGCGATAACGTGGGCCACCAGCCCCGGCGCATCCGATACCAGCGACACGGCGAAACGCCCGGTAGCAATGGCCGTCAGGTC--TTCCCCGGCGGTCTTCTGGTACAGGTCAAACAGGCCATCAAGGTCGTGATAGTGAACGCGAATGATTTTGGAAATGTCGTGGAAGGAAAGACCACGGACGTTAAACGAGCCA--GCCTTTTCGCCGCGACGGGCCGGGATAGTGATTTCTTCGGTTTCGGGTGTGTAGTCTGCTAATGACATTTGACGGATCTCCTTTGCGCTAATC--CGTCGTTAATGTAGCACATACTTGCAGA------TAAAAGAAAAGCGCCCGAAGGCGCTTTATCAGTTTGGCATGTATTACGGAGC---CGAGAAGGTAATGGTTC-CGGTAGTGGCCGCTTTGCCGTTTGCCAGCGTTGCGGTAACAGTCGCGGTACCCGCTGCGGTACGGTTGACCGTAGTGGTCGCCGTCCCGGTAGACCCGGTCGTCGCGCTGTTCGGCGTGACGGTGGCCCCGGCCACGGTGGTGAACGTCACCGCGTCGCCCTGTACCGCCGTGCCAGTGCCGTCACGGACAGTCACCGTACAAACGACACCCGCGCCGCCAGTGGTGGCCGTAGTCGATGCAGGCGTGATTTCGATGGTACGCTGCGTGGTCGGGTCAACCGCTGCGGCCGCTTCGACGATGTCGATGTAGACGCGCTGCGTGATGTTGTTAAGCTGCATGGCCTTGAAGGTGAAGGACATGACCTGCCAGTCGTCGCCTTTCAGTGCGTAGTCGCCGTCCGG-CGCGAGAGACACTTTCGGGAAGTAGTAGTTTTTGTTCAGACCAACCGGGTTATCGGAGATCATGCGCAGCGCGCCATACACCATGTTGGACTTGCCAATGACCAGCGTACGTTTCTGCGCATCAACGTCGTACTGGACGGCGATCTGCACGTTACCCGACAGGTCGGTAGAATCCGGCTCGATGTAGATGCGGCCCGCTTCCAGATCGATTTCGTAGTTGCCAGCCGGGTTAACGACAGTGGCACCAACGATGGAAGTGATGTCGCCGCTACCCACGGAAATCGCGATAGACGC-ATCGGCCTTAACCATCTGGAAGTTGGTCACGCCGCGAACA--CCCGTCGGGTTATCGTCGGTGGTACCGAGTTGGTAGTAACGGCCGCGCATAATCGGGTTGAACACTTCTTTCGCGTCGGTCTGCTGCGTCTGAGTGGTGTTAGATACTTCACCGAGGAACCACAGCGCGAGGTTATCCGCGTTGATGTTATCGCAGGTGAAGGTACCGCCCTGAGACGCTTCCAGCAGCACGGACGCATCCATCACGCGCATACCGTGATCGGAAGAGTAGTGATCCAGCGTTTCGGAATCGGTGTTGATGGTGAATTCCGGGGTGTTACCGAAATACATTTCACCAGTCTTACGGTTAGTGC-CGTCTTGGAATCGGTCAAAGTAGACCGTTCCGCGACCTACCACATAGTTATTCTGGTAGTTATCGTT---CATTCTGTTTCTCCTGTTAAGGATTCCTAATGTCCACTTTGAGTCCTACCCTAACAGGTAGGAAGAAAAACGCCGTATCGGACAAGCCGTCTTCTGGTGGTCTGACAACGGGCTGCGCGAGTGTGAGTTTAGCAATCTTCCCACCCAAGCGGTAGAGGGCTGGATACATCGGTTGCCCCTGCTCGTCCTTCGCCACCAGCATAGCCAGTCTTTTTTCCACCTCGGCCAGCAGTTCGTACGCCGGGTCGGTCGGGTTTCGCGGGTCGTCTTTGACCCACCCCTGTACCAGCAGCACCCAATCGTCCATGCGTACGGTCTGTTCCTCGTTGGCAAAGCTACCGTAGTCGGTGGCCTTCGCTTCGAGGATCGACACGATAGGCAGGCGGGCCGTGAAGTCCGCCCCAAATCGGTCGCGCCCGCGATACACTTTACCTTTCAGGTCATAAGCGTATCCGTTTGCAATGGTGATCTGTTCAAGGTGCGCTGTCAATGCTTTAAGAATGTCAAGCCTTTGACTCATTTAGACAGCCTCGCGAAATTACGGTGGAATTCTGCCGCTACCATGTCACCTATCTTCGGCGCGACCGTCTCGGACACTTCCGCGAAGACCTGATCCACCGACGGCCCGTACAGCAATGCGACGCGGCCCGGTACGAGCCATGACTTGTGCTGCGAGCGTTTGTTAGATAAGGATTCCCCGGCGGAAAGCCGTACGGCCAGACCGATGTTATAGTTGTCCTCGGTAAGACTGGCCCCTTTGTTCAGGCGCACCAGAAACGCGTTTTTCAGGTATGTCGTCTTACCCTTCTTCACGCGAACTTGTACGCCGCCGCCCCGTTTGCTGTTAGCGACCATTGCCCCGCCAGTAACGAAACGGGCGAGGCTGGTGGCGCGTTTACGCCCGGTAATAACGGCTTCGAGGTTGGTCTGAGTGGCGCGCTTAGTTAGCTTTAGGCGGTCTGCGTTGAGATAGCCGGATGGAAAGGCAATCTCGTCGGTCATCGACTTCTTGATAAGGGTCATGCCCTTGCCAGCAGCCACGCTATTAATCGCCATGCGGATCGAGTTGTTAGCGATTTCCGGTACCTGTTCCAGA--TACTCCTTCAACTCGTTGGAGCCAATCGCTAACACGTTAACAGGCATCAGTCGGCCCTCGCCACCTGCCAGACGACTTCCACTGGCCCGACGATGGGTTCTTGCGTTTTGAGAACCAGACGGGCGTTCTCGTATCCCTCGGCCGTCATTATGATGCTATCACCTTCGGACAGCACCACGCCTTTGACGGCCAGTTCTTCACGCGTGAAAATGATTCGCTCGATGCCCTCAACGATGTTCGCGTATCCGCCGTTTTCAAGATCACCCATGATAGCGATTTTGTTGTGCCAGCGGACGCTAAGACCTTCGACGATGACGTCCTGCGAATAATTCTCGTAGCGAGCAGGTACTGACAGGGACGCGTGTACGTCCCTGCGAGCCTTCGCTTTAATTGCTGCGAAGTTAGAAGCCATAATTAGACTTCGTCTTCCGC---GCCAGACTTTTTATCGTCTTTGGCGTTTTTCTTAGCACCGTCAGCCTTCTCGTCTTTTTTAGACGTTT------------CAG---CTTTCGCCTGCTGCGCTGCGGCTT---CCTGCGCTGCCTGATTTTCCACGTCAACTTCCATCACCGGGCGGCCAATGGCTTCCGGATTGATTTTGTTGATGCTTTCCAGTTCGGCCTGTTTGAAATCAAAGATCTCGCCGATGGCAGGTTTGATACGAGCGCCGTCGCGGTAAACGATGACGGTCTGGAGAACTTTACGTTTTGGCATGG-CTCTTTCCTC-AAATCGACCCGCCCGGTAAGGCGGATCGTACGGTTTGAATTACGGGTGATTAGGACATTACGGTCAGCAGGAACGACGCATTCGGGTCTGCCGGAACCATCAGTGGAGCGCCCTGAGACATCAGGTATTCCACGCTCGGGTCTTCCTGATCCCACATTTTCGGGAAGTATTCAAGCGCCTGATAGCCAGCGCCTTTATCCAGAATAGCACCGAAGCAACGTACGCCCTCGATCGCCGAGGAAATACCCATTACCGCTTTCTGCTTCATCAGGAACTGTTCTTGGTCGTTCTGGTCGCGGTATTTCTGAGTGTTCACCCAAATACGCATACGGCCAGCGCCGTTAGCCCCTACCAGTTCGCCCATGTACTGAACGCCTTCCACGTCATCCCACAGGCGGGTAACGTTGGTTTCAGAACCACGGATGGTCGAGTCCATCAGGCCATCTTTGCCCCACAGTTCTTTGCCGCCAACCTTGACGAACTGATCCCAAGCGTCGCCGCCGAAGACGTAGTCGCGGATCACGGTGCCGGACATGGACTTATCGGACACCAGACGTTGACCATCGCGCAGGTCAGCAATCATGTCCATCAGGGTGACGCCAGTCGCAGTCCAGTCGGTAGTCATGGTCAGCGCTGCATCACGGCCGAAGTCTACACGCACCAGCGGGTAGTCCTGACCCTGAACGTCAACGTAACCATACTGCGCAGCCTGCGCCGCCATCCATTCCCACGTATTTTCGTGCATGGCGCGGTGTTTCATCAGCAGATATGCGATGACACGGTCGCGGCGCTGCGCGATAGACAGGGTGCCAGTACCCAACGCTTCACCCGGTTGACGCGGGATGATCATGTTAGGGTCGATGACGTGTTTCGGCTTCACGTAGGCTGGTTTAAAAGTCTTCGTGTTGTAGCCGCTTTCTTTGATCACGCGGCCCTGTACGTTCGGTGCAACGAACGGAGCAACGCGGGTTACGTCCTGAATAACTTTATCGAAGGCAATCATGTCTTCCTGAAAGTTAATCTGGCGCGGGAACCATTGCAGGAAGAACGCAGGCAGCGTTTTCAGCTTGCGCTGTACTTCGAGCAGTTGGTAAGTAGTGTAAAGTCCAGCCATTTGCGCTGCTCCTTAGTACAGATTGCCGATGTGAATGTTAGTACGGTCGAAGACCGCCTGACGTTTAACGAGCGTATCAACGGTCGCAGGCCAACCGAGGGCCGCGTGGTTGAACACCCCGCCAATGTAGTACGGCACGTTCTGGCCGGACTTCGCTGGCTGTGCT-GCGATACCAATCGCCGTTGCTTCCGGGGCGTCAGCGGTAGTCGGGTCGTACGGCACCATCGCGCCAGCGGCGTTCTTCGCGATAACCTGATAGATCGCGATGTCAGCGCCAGCGACGCTACCT---TCGGTCACAATATCGGCTTCGCCTGCGAAGATTTGGGTTGGCTCCCAAGAGCCGAGGTCGCCATTTCCCGCCAGATAGTTAGGCAGGCTGGTCGCGGCCATCATAGTCA--AAAGATTCATCCGAAGATCCCCTATTACTTAGCCATGTTAGAG---CCAGCTACAGCGGTCATTGCCGCCATCAGACCAGCCGTTTCTTTCGCGCCTTC---CTGCTCGTTGCCAGCGTCGGCACCAGCGTTAGGATGGTCAGCATTCGCCATCACGGTATCGAACGGGCTGTCACCCTTCGCTTCGGTACCCGGTT--TACCCGGCGCGGCAGCGTCAGGGGCCACGGTGGTGACTGCGGCTTTCGGTTCTTCGGCGGAATTGGTCAGCATCGCAGTAGCGTCTTCAACGGACATATTCGTGTTGAAGGCGATATGGTTTGCCAGTTTAGTGCGG---TTAGCCGCTGCATCGCAGCCCATGATCCCGGCAATGCGGGTTCGTTC----------GTTG-----GTCGCCGC--------------CT-CTGCG------CGGGCTGCGTCCATTTCTTCTTGCGTAAAGCTCATTGCGTTCGCTCCTGAGTG---ATCCGGGCTGTTATCGGACGGCCCGTTGAGGAATTCGGTAACAGCCTTCGAAGGCGTTGATACCGCGTCAATTAGACCGATTGACATCGCTTCACCAGCGTTATAGCACATCGCTTCGGTGTCGCGCACCACTTTCGGATCTAAATCCCTGTTTTGAGCGACAAGATTGACGAAGTCGGTGCGCATTGAATCCACGCTCGCTTGCCAGTCTGCTCGTACTTCATCGCTCATTGGTTCGTACGGGTTGCCGTCGGCTTTGTGCTCCCCGGACTTAATGATATTCACGGTGATACCGATATCCGCCAGCATCTTCGACATGTCGATGTGAAGGGCGATAACACCGATGCTTCCGGCACCGCCGGATGGCGTTACAACGATTTTATCCGCTGCGCTTGCCAACGCATATGCCGCAGAATA-GCAGTTTGAATCGACAACCGCCAGCGAAGGTTTCTCGCCGCGTGTATCAAACATTTCCTGAGACAACTCGAAACAGCCCGCCGCTTCCCCGCCGTTCGAGTTGACGTCGTAGATAATCGCTTCGACATCAGGGTCGGCCAGCGCTGCATTACGCTGACTGCGGATAAAATTGTAGCCCGTCACGTAGCCGTAGTAATACCCGCCGTAGCGGTTAATCAGGGTGCCATGAATCGGGATGATGGCGAGGCCGTTGGAAAAGGCGAAAGGTTTGT--CCGCAGATGGTCGGC-CTACGCCATACGCTGCACACAGGTT-----TTCGCGCATCTGCT----GTTCAGCGCGCTCCTG---AAAGTCTTCATCATCACAGGACATCATTTG---------CTGCATATTGGTCAGCAGCGTCGGGTCATTCTCGCGAATGGCGATCGGCTGGCCGTTCATACGACTGAGC-GC---CATTGAGACGCTCGCTCTTACGTGGTTGC--TCATTCCTTCGGTTCCTCTTCGTTGTTGTCCGA-GCCAGTGCTGCCAGTTGAACCGCTTGCCTCCGTCCCTTCGACCATCTTGCCGGAGAAATCAAGGCCCAAATCTTTGATGATGCCTTCTTCGCGGGCGCGCTGTTTGAATACTTCGCGGAAGTCTCCACCGAGGCGGGCGATTTCTGCTTCGTACGTTGACAGGCCATTCTTGATGCGAAGGATAGCGGCTTCGGTTTCTTTCTTCTCGTCGATCTGGCCGCGACTCGCGCCGATCCATTCTGCGTTACAAAGTGCGTCACGTTTCATCGGGTCGTAGAAGTCACGCCAAGTGAAGCCCGGCGGCAGTGGAACATTACCAGCGTTGACCTCTTCTTCCAACCACAACGTATAAATCATCGAAGCAAAACGGTCGGCTACCAGCTTTTTACGGCTTTCCATGTACTTCCACGTTTCAGCCATCGAAGCGCGGGCAGAAGAGTAGTTCGTCTTCGTATAGTCGCGGCTGAACTGCTCGTACGAAAGGCCGAGTGATGCGGCGATGTTCCTGAGCAACGATTCTTCATAATCGGTTCCGACTCCGCCCGGCGTTCCTGCGGGCTGCATTTTCAGTTTCGTACCGGGGAACAGGTGCGGGATTTTCGCCCCGTCGATTGCGATGTTTTTCGATCCGGCGATGTACTCGGCCAGACTCCCCATGTAGGTTTTCAGGATGTCGCCGAAAGGCG-TCTGCCCCATACCCATCTGATTGAAGACCACGTCCGACGGCAATTCGGATTCAATGGCCGCAGCGTAGGTCGCGTTGACGATGGCGTTTTGCAGCGTGACTTCCTGAAAGTTTCGGGTCATCTTCATCTGCTTCAACGCGGCGACCATTTCACTGATACCGCGAGTCTGGCCCGGCAGCAGCGCTTCAATGATGTGGATCATCCGACGTCGGCCCCAATCGAAACGAGCGGGCTGATATTCCCATCGCCATTGTTCG---AGGTCAGTCGGGTCGCCCGGGAACGCCTTACGCAGCCAGTAGCCGATCGGCGCACCCATTTCATCCAGTTTGACGCCGGAGCGCAGATACTTGTCG---TCCATGATGTTGTCCGGGTTGGACAAACGGTATGGCGAAATCATCTGGATCGCTGTGCCAAACGGACGGCGCTGCAT-ACGGGTACCCTTCGG----CTTCATCCACTCGCACGACGCCAGAACTTCCCCGGTCATGATGAAGCCGCCAACGGCCAGACGTACAAGCCCGGTCAGGGTGTTCATCCGGCGGGCATCGAACCAGTTTTCAGGAGACTCGGCCACCATGTTGAAGCGCGCCTCGACTACCTCCTGAAATTCATCCGCCCACCCTTCCGGCGCGCCGAGAACCAGCGAATTCGGTTTCGAGTTGAGTTTGTACTGCGAGCCGACCACGCTGTCACGGTGGATCGCCACCGCGCCGAACGCGTAGCCGTCGTTCTGTACGATGTCCTGAGCACGCGAAAGCGCCAGCGTACCG-TCTTGGGCGATCTGCTGGTCGGGTGAAATGACGGCAGGCGTCCAGCGGAACATTTCACGCGTGTTCCGTTCAGCCCCCTCTAAGCCGCCACCGAGTGCCGAAGGATTCTGCGGCGTGGCGTCCAACGTAGCGACGTCGGCGGTCTTTGCCACTTTCTTCGCCCGTTGTGTAGTGCTTCTCTTTTTCTCGGTCATGGGAATAAGAATCCT-GCTGGTGAACTTGGTAGGCCCATGAAGGCCGCGCAAGGGTTGTCCGAATTAATCGCGTTTTGCAGTCGAACGATGTAGGCCCATAGGCTTTGTCGGTTCGCTGCGGTATATTCCACGCGTTCACTGTTCTGATCCACCACGACGCGTACCGAGCCGCCGAGGTTTAATTGGTGGTACGCATCCATCGCTTCTTTGAGCATGAGGCGATATTGCGCGCGGCATTCTTCTGGTGTCATGGTGGTTCTCCT-ATGCTAACGCCATTGCG---AGTTTCTCGAAACTGTATTCGGTATCT-----TTCGGCGCATCAATA-GGTTCATCGCTCGGCGGTAAAATAACCATGCTGTTATCGTCCCACTCCGCCGCCCATGATGGCGGGTTGTCCCAATCTATTTGTTCAATCCCGAGCACCCGGCCGCTGACGCAAATACCCAATAAATAATACGCCAAGTCCCACGTTTCGTTTCGGGCGTGCGCCGGGTTGTGCCAGCCTTTCTCGTCACGCGTCTCCGTACACAGTTCGGCGAATACCGCGTCGCCC---ATCCAGTCCGGAATGTGGTACATGCCTTTTCCCGGCTCCACGACGTCCAGTCGGCCGTTCAGGCTGTCTTTCATCACGTTCGAGTTAATCATCAGCACCGGAACGTCGCCGCGTGCGATGGCCTTTTTGTCTTTCTGGTTGGAGTCCGGTAGCGCCACGCGGGTACGCGGGTTGTTCGCTTTCGGGTCGCCCTTCACCAGACAGAAGCGCCCGGTTTTCCCTTCCTTCCGCAGTTTCCGGAAGAATTCGTACGCGTTGCCAGTTACCCCGGCTTCACCGCCGGAGTCGCACGCGGTCATCTTGATCGGCAGCGAACGGCCAGAATCATCGGACAGCAGGTACGTCTTGTTCATCACTTCGGTTTCAATGAGATCCCAATCTTCGAGGTATGCGCCCGGGTGCAGGATTTTCGGGTCGCCATCGTCATCGAGGCGGCGCGATTTCGTGATATTGAAGCGGTCGATCAGGTATGTGTCGAACGGGTAGCCGGGGGCCACGCCATGCACCGACACTTCAAAGCTATGCTTCTGCACGTCAACCGTGGCCGCCAAGAAGCGCACGTTCTTCGGCACCGTCTGTTCCGGCCACTTCTCGGCTCGGGCTTTCAGCGCTTCCGGAACGCGTACCGTCTCGATAGCCTTCGGCACGTACGGTTCGCCCATGTCGTTGTTCCAGAATTTCTTCAAGGACTCTTCGGACATCGTACGCTCGTAGTCATCCATCGCATCGAGGTAGTTCAGAACCAGTTTCTGCCATGTGATGAACGCGGCCGCCGTTCCGCGAAGCCAGAAGGACGCGAATGACGAGCGCATCGGCACCCCGGCCAGTTGGCCCAATTCGTTGACGTGACAGCCTTCCGGCACCCACATCCCCCACAGGTTCATTTCGTATTTGTCTACCGGATCGATTTCGCACCCACAATGCGGACAGACCATGCGCACCGTCTCGGACTTTTCGAGGTTGGTAAGCGGATTGCCATCGGCGTCTTTCGTGTTCCACTTCAAAAGCTGGAAGGTACCTTCGAAATACTGGTCACAGTGCGGACACGGCCATTTCCAGCGTCGGCGGTCGCCACGGTTGTATAACCCGACAATCCCGTCGCATGGCGGGGCTTCGTGCGGCGTACGCTTAATCCAGTTCGGGTCTTTAATCGGACGTGATGGCGAGGACTCGGCCGCACACATGGCAAACGACCCGAAGGTCGTCGTACGTTTTGATGCGAGGTCGAAGGCGTTACCGTCGCCGCCGATGTCGTCGTCGATACGGTCATAGTCGGTGATGATGATACGGCCAACCGGACGGCCCGCCAGTTCGGTCACAGACGGGTAACTCAACGTCAGGATGATCCCGGTAACGTAGTGTTTGTCGAACTTGTTATCAGCGTCGCGGTTCTTCATCAGCATTTCGCCCACTTTCGGGCTATGGCGATGAAGACGGTCTACACGTCGCATTGAGAAGTCACGCGCGGCCGTTGACGTCGGGCAGTAGATCATCAGATCCATCGGGTCAACTTTCACCGAATAGACAATGCTATTCAGGATCAGCGCATCAGTTTTACCGGACTGTGCCGGGCCGACAAACGCCATCTTGTCGTACGCCCGGCTGTTCATCATGTTCATCGGCTCAACCATGTACGGCGTGGTCGAGTTTAGCCAACCCCCGACGTATGCGCCGGGTTGGTTGACGTAGCGATACTTGGCGGCCGCGTCGGCCACCGTCATGCGCATGGGCGGCCGTAACTGCTCGGCCACCGAACTGATAATCTG----CCCGATGCTCTTAAACTTCATCGTCGTCCACCTCGTCG--CCGTTGAACTTATCGATCAGCGCGCTCGACAGGTCGTTCAGCATGGCGTCAATGGATGACGTGATGACCTGACGTTGCGGCTCGCTGAGTCCGGCCTGACGCGCCAGCGTGTCGGGAATGAGCAGCATCGACATGCGCAGCACCTTCACCGCCTCGCCGAAGTGCTCGATCACCTTCTCGGTTTCCCACAGGTTGCCCGCTTTGATATCGAAGTCCTGCTTTGCGCGCTGCCCGGCCCAAAACTCTTTCGACAACTCCTTCGGCAGATCCTTGAAATTCATGCGGCGCAGGTACGTCTCAACGTCGTACAGCGGCTTAACGAGGTACGGGGCCACTTCGTGCACCGCGTAGATCGGGTACCCGCCGCGCTCGCCGACTGGCGGGACATCCATGATTTTCGGCGTGATGTCCCGGCGCTCCATGCGGAACAGCTTCGCCAGTTGCGTGATGTTGCAGCCCTGAAAGATCATCGCTTCGGTATCGGCGTCCGGCGCATTAGAGCGGCGATTCCGGGTTGCCAGTGGCGCA---TTA---CTCTTCGTCATCCCATACCCCTTTATTTTTCGATTTCTTGCGGCGTTTGATGCGCCCTTTGATACGTTCGAGCAGTGCGAAGAACGCGTCCTGCACGTCTTCCTTCTCGACCAGCGCCTGTATGACGACATCGTCGGCTGTCTCGGCCAGAAGC-CCG--TTCGGTGTTCGCAGCATCGCCTTGAACTGGTAGATCGTAACCGGGAACTTCTGCCCCTGACGGTGCAATCGGCCGTTGAATTGCAGGAAGCGTTCGAGTGACCACGGATTGTCGATGTAGACGATGACGTGGCCGCCATGCTGGAGGTTTAGACCGTGTCCCGCAGACTGAGGGTGCGCGGCCAGCAGGCGAATCTTTCCGGCGTTCCACTTCTTGATGCACTTGCCGTCATCGTCCATGACCACCAGA--TCTTT----AAACCGCTCTTTCAGTCGTTCGAGGGTCGGCTTGAAGTGATAGGCGATCAGCACGTTTTTGTCGGCCAGCGTGGTTTCCAGCAATTCTTCCAGCGCATCGAATTTCAGGTCGTGCAGCCTGTACGTGTCCTTCTGCTTGATGACCTTGTCGTCTTCCGTGATGCCGACGATTTTCGTGTCGTAGATGAAGCCCGAGCACATCTGCAATAACTTCGACTGCAAGGACGCCGCCTGCTCCGCCTCGATC-ACAATCGGGTCATCCAGATGTTCGTCGAAATCTTCCGGCATAATCTCGACAAGGCTTTCTTCCTCCATCATGCGGTACCGCTCCGCCGTCTCCCCGTCTAACTCGACCGGGACAGGAACGAAATTCGGTTCGTGCATGTCAAGGTAGTCTTCCGCTTTCATGACTAAACATATATCAGAAATCTTCCGAATAATCTCGTCTTCCGCGCCTGGGCGCAGTTTCCACTTGAAGTTGTATCGGTTCTGCGTGAAGTAGTTTTCCTGATAGCCCCCGATGGTGGAGCCAAAGCGCTCGCCTTCATCCAGCAGGTAGATTTGCGCGAAGATACCCATGTACCCCTCGGCCGCAGGCGTGGCCGTCAACTCGACGATGCGTTTGATATACTTTCGCACCCGGCGCAGCATTTTGAAGCGCTGCGAGGTGTGGGATTTGAACATGCTCGACTCGTCAAGCACTACGGCGTCGAACGGCCATTTCGTTTTGAAGTGCTCGCACAGCCACGCGATGTTATCGACGCTGACCGTGTAAAAATGGCAGTCCTTGTTCGCGGCCGCCGCTCGCTCTTTG--GCGTTCCCGGCGATAATCGACATCTTGTAGAAGCACAGATGGCCCCATTCGTCGAATTCAGTCGGCCACCCGGTACGGGCCACTCGCTTCGGCGCGACGACGAGGACTTTGTTTATTTCGCCGTCCGCGATCAGGTCGAGCATGGCTGTCCCGGTCATCACGGTTTTACCCAAGCCGAGGTCTACGAACATGCCGCAGTACGGATGGTCTTTGATAAACTGGACGCCTTCATCCTGATAGTCGTGCATGTC--GCTGCGGTTCAGTTTAACCGTCCGCAGGCAGTACGCGAGCGCTCTACTCAAAGGCGATAATGTAGTTTTTAAAGTCTGCAAAATTGTCCACCCATGTCACGTTTGCCCC---GGCCTTACGCATTTCCTTATGGCGGTGATACTGCTGCGCCGTTGGTTCTTCGCCGGGGCGTTTGAATTCGATAAAAAGCACAATGCCGCCACGGATCAGCACGCGATCCGGGACGGCTTTTTTGCCGGGGGCGGTGAATTTCGACACCCACCACCCGCGCCCCTGCGCGTATTCGCAGCAGCGCTTTTCGACCTTCGATTCTCTG------------------------ATTATCGGCT----CGGC------------------CATGTTAATCCTTACGGTAGAAATAGCCTTCCCACCCGGCAGCGCCAAGCGGAAGCCCTTCGGCCCACGGCAGTTCGGCCGCCATGCAGGAGATCAGGTCATCCACGGTCAGCGGGCTGTCTTCCGGCACTTCGGTTACGATTTCATCGTGGATGTGCATGACGATGCGGAAGCCCATGCGGTGCGCCTTTTTCAGACCTTCGGCGAGCACGTCGCGCGCCAGTGCCTGAACGATGTTTTCCACCAGCTTACCGCCGTGACTGTAGATCTTTCCCCACTTGGTGCCGCTG---CCTTCCACCTTGCCTTCGTACTGGAAGTTGGTCTTTGTGTACTTCTCGCCTTT-CTTCGGCCCCTTCTGAACCGTCATCTGGCGCTCGACCAGACGCGGACGGAAGTAATACATTTTGCGGCCAGACGGCAGTCGGATGGTCAGGAATGGCTTCGTGTATTCGATGATCAGACAGCCCCACACGACGGCCTGACGGGTACGGATAACCTTGAATACCGCGTTTTCGAGGTCATACCATGCGCGCACAATTTCCGGGCAAAGGTCGCGGAACGCCTGCACCGACTCTTCGGCTTCTTTCTGCGTCATGTGTACGCCCATGTTTTCGGCATAGCCCCACAGTCCGGTCTTCTTGCCATTCTCGTCCATGTGGCCGCCGCCGAGGCGATAGCCCGCGCCGAGGGTAGCAGGTTTGGCTTTCGAGCGGTGTGGCTTCGTCTCTTCGTACGGCAGGTGCAGCCAGTGAGCCGCGAAGGAGCGGTAAAGGTCGTGCTTGGCCGCCAGCGTGTTCATGAACCATTTGCAGTCCGTAAGCCATCCGATAACCACGGATTCGATGGACGACAGGTCAGCAACGATGAACTTGTGGCCCGGCGTCGGGATGAAGGCGGAGCGGATGCAGCCCACCAGCGCGTCCATCGGCTCACCAACATACAGCGTCAGCGCATCAAGGTCGCGCTGGTGGATCATCTTGTTGACGATGGACAGGTCGGTCACGTCCTCGATCAGCTTCGGCGTTCTCGGCAGGTTTTGGGTCTGAATACGACGGCCAGCCCAACGGTTCGTACGGCTCGCCCCGGCGAATTGCAGTGAGAAGCGGAAACGGCCATCCTCGCCAGCCGCGTCAATCATGGTCTGGTATTTGGACAGGGAGTTTTTCGCGCTGTTCAGTCGCATTTGCAGCACGCGGATCGCTTCCGGGTCAACGCCGTTTTCATCGGCTTCACGGATGACCTTGTTTACGGTGTCGCTGCGGAGATCGCTGAACGGGTAGCCGCGCTCTTTGAGCCACGGTGTTAACTGCGCCGGGGAGTTTGGGTTGTTCAGGCCAGTGATGTCGGCCATTTCTTCGATAATCTGCGGTTTGCGCGCTTCTGCGAGGGCCAGCGCCGAGTACGCGAATTCGCGGTCAATCATCACGCCTGTGTCGTTGATGAACTGATCCAGCGCGTACATGTCCCACT-CGGCGTCCAGTACCGGGTACCGCATCAGGCGCGCTTTAATCGCCAGTTCGGTTTCAACGTCCCGGATGTTATATTTGCAGAAGTGCCACCAGTCTTCCGGGTCGGTCGCTTCGTTGCGCCACTCAAACGGGTTTTTCTTCGTGACGCGCTGCGGCTTGCTGAACAGGTCGATCAGGCGCTTGCCTTCCGGGTCTTTCAGTTTATCTTCCGGTAAGCCGATCTGCGTGCCGACGGCCAGAAGGTCGCCCGCGAAGCCGAGCATGTAGGCCAGCGCCATCGTACAGCGCCACGCTTTATACGGCGTTTTTATGCCGAGCACGCGGTGGGTCATCACGCGTTCGAACTGCGCATTAAAGGCCCATTTCTCCACGTCCGGGTCTTCCAGCGCTTCACGCAGTTCGCCGGGCAACTTTTTGCCTCGGTGAAGGTCTACGTGCTGCACCGCTCCGCCGTTGATAGACCATGCGCCCATCAGCACTTTCGTCGATTC-GTCA-CTCGAATAGCGGTCGAAGCCGCTCGTTTTAAGGTT--CACCCGGCTTCGGGATTCATAGTCAAGATTAATGCAATCTGCCACGTCAACGCTCCTATATGAAAAAAGCCCGCACACGGCGGGC------CTTGAATTACCGCCCG--AGGGCGTAAA-----------TTAA---------ACTTCGTCTTCCCAATCTTCGTCTTCATCCCACGCATCAGACGTGTCAACGCGACCTTCACCGAACGGTTCGTCGTCTTTGCGCTTGAGAACGGAAATCAGGTTGGCGTTGACGCGTTTGCCGAATTTGTTTTCCTGCGACCACGGACGGATGACGACAGACACCCAACAACCGCCGTAGATCTCTTCCAGAATTTCGGAAGAAGTAGTCAACTCTTCGCGCTCGATGTTATACACATCCGGGCGTTTGCTTTCGCGCGCTGAGATAACCCACATCCCTTCGCATTCCGGTTTGTCCGGGAAATCGGTGTCGCCGTCTTTGATGAACAACATGGACGGAGCGACTTTAAGCGCGCCTGTCTTGTGGTTCTTCTTGGTGACTTCGATCTGCTCACGGATGATTTTCTCGATCTCGCCGTGGCTTTCTTTCGGCATCAAAAGCGTCAGCGA----GTATTTCGGCTCGCCGCCGTCTTCGCCGCCGTACGGCTTATCGAGGTGCGGGTAAGAAGCACGTACGTTAGAAATCTTGATGTGACCAGATTTGTACAGCACGCCATTCTTGACTTTCTTCGCAGGGACTAATTTCTCGGCCATCTTAATATCCTCGGTTTACTGTTTTACGGGTTTACTTTCTACGGTTCTACGGGTTTACA---CTTCGTCATCATCTTCGTCGTCCCACGCCCCGGAATACTTGCCGTCCAGTGGTGGCCGCTTATCGGTCAGCGGTGCCAGTGTCGGCTTGCCTTCCGGCTTGTAGACTATCCCCGCGATGATGTTCGGCGCGCCAGCCCGGGACACGCCCAATTCATCCCTAAGCACTTCTTCCATCTGCGCCGGAGTACGCAGTTTGCGCTCGATGTACTTGTCCTCTTCGATGTCGAGGAACTTGAACAGCGCGATCGCATCTTTCTCGTTGGCGAATTTG----CGGTTTGTCCGCGACTCCACCAGCTTTTGACCCGGTACCTTCTCGCCGTTCATTGCGCGG--CGTTCCAGTTCGAAATCAAGGCGCGAGAACCAGTTTTCGACCACCTTGCGGTATGGCAGGATCTTCGCCATCTGCTCGGTTGTCAGGTTCCCGAACTGCGCACGCCGGAATTTATACTCCTGCGCCAGCGCATCACGCAATACTGACATTTCTTCCTCCCCGAATTCGGATTCAAGGAATTCCACATCCCCGCCCACCGCGCATTCCATCATGTACGCTATCGCTGCGCAGTTATGTGCTGCCCGGCAAAAGCGACACCCTTTCAGGGATGCGCGGCGCGGCGCGGTAAGGCTCCATGCCGCTGCAATCCGCTCCCGGGCGTACTCCGCAAACTCCAACAACTCGTCAATCGTGATTTCCCACGTATCGAAGTGGTCGAGTCGCGGCTGCGCAATCCGGATGATGATACGGTCAAACTCGTATTCATCCGCGAAA-GCGCGGTACGCACCGTACGCGTAAAGTAGCGCCTGCGGGTTCCCTTCCGCGAAAACCTGAACGCCAGTACCGTATTTCAGGTCGGTCACGATCAGGGTGCGGTCACGGATGATGATGTTATCCGCCGTTCCGCCCTGTGCGACAAAC------------TCTTCCGGTTCTTCGTCAGGTTCATCCGGGTTCGCTCGCGGCATCAGGTCGGTGAACCATACCCTGATTTCCGTGAACATTTCACCCTCTTCAAATCGGCACCAGTCCACATACTCCTGAACGTAGTCGATCATTGACCGCGTGATAGGGATGTCATGGCTGACATCGCCTTCCGTGATCGTCTCGACGGTACCGATTAAATGGGTTGGCCGGACATCCGTTCGCAGCCATTGTTCGGCGATTCCGTGGGCCACCGTTCCTTCCGCCGCCTCGTAGATGGTTTCGTCATGCTCGAAAAGCCCTGCTATCAGGCTTCCGGAACATGCCATCCAACGCGCTGACGCCGAAGGCGCGAAGATTGAGTGACCGCCACCGCCGAATTCCCGCATGATGCGGACTAACAGCGACTTACT</Hsp_hseq> 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||||||||||||||| | || || || ||||||||||||||| |||| ||||||||| || |||||||||||||||||||||||||| ||||||||||| | ||| ||||||| ||| || ||||| |||| || | ||||| ||||| |||| ||||||||||||||| | | | | ||||| ||| ||| ||||| || |||| | ||| ||||||||||||||| || | || |||||||| || | |||||||| || ||||| |||||||| |||| ||||||||||| || ||||| ||||| || || |||||||||||||| |||||||| || ||||| | || | ||| |||| ||||||||||||| ||| ||| | |||||| | ||||| |||||||||||||| | || |||||||| || |||||||||||||||||||| |||||||| |||| |||||||||||||||||||| | || | | |||||| | |||||||| || || |||| || | || |||| ||| |||||||||||||||||||| | |||| || | | || || | | || || | | | ||||| | | ||||| | || | || |||||| | || ||||| | || || ||||||||||| || || || |||| || |||| || ||||| || ||||| || | || ||||| | |||||||||||| | ||| |||||||| ||||||||||| ||||||| | | ||||| ||||||| || ||| | ||| || || | |||||| || | || || ||||| || | || |||||||| | || |||||||| | || | || || |||||||||||||||||||| | ||||||||| ||||| || |||||||| | || || |||||||| | || |||| || | || ||| || || || ||||| ||| |||| || || || | ||| ||||| | ||| | |||||| ||||| || || || | |||||| || ||||||||||||| |||||||||||||| || | ||| ||| ||||||||||| ||||| ||||| || | |||||| ||||||||||||||||||||||| ||||| || || |||||||||||||| || ||||| |||||||| ||||||||||||||||| || |||||||| | || |||| | ||||| ||||| || | || || | ||| ||| | |||||||||||||||||||| |||| ||||||||| | ||| || ||||| || || |||||||| ||||| |||||||| ||||||||||| || || |||| || ||||| | || | |||| ||| || ||| ||||| | ||| || || |||| |||||| |||||| || |||||||| || ||||| || |||||||||||||| || ||| || ||||||| |||||||| || | |||||||||| || ||| |||| ||| || ||||| |||||||| || || || ||||| || | || ||| |||| | || || | | ||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>4428.56</Hsp_bit-score> + <Hsp_score>4910</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>53801</Hsp_query-from> + <Hsp_query-to>57366</Hsp_query-to> + <Hsp_hit-from>4480</Hsp_hit-from> + <Hsp_hit-to>904</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>3150</Hsp_identity> + <Hsp_positive>3150</Hsp_positive> + <Hsp_gaps>41</Hsp_gaps> + <Hsp_align-len>3592</Hsp_align-len> + <Hsp_qseq>AAAACGGCCCCC-GCAGGG-GCCGAGTTACACGATCGAAGATTAAACGTCGTCTTCTTCGGAGTTGCCTTCGTCCTCTTCCTGTTCGGCCAGTTTGGCTTCACACAGGTCAAAGATCGCGTCGAAGTGTTCTTCTTTCGCTTCGGCGATTTTGGCCAGGCCGAATTTCGCGGTGATCTTTTTGGCTTCCGGGGCGCCAAAGCGGTCTTTCACTGCAACAACCGCCGCCACCACTTCGTCTTTGGTGTGTTTCGGCTTGTCTGCCGCAGCAGTG---GTTTTGCCTTTGGTGGTGGTTTTA------CCTTTGGCGGTGGTCTTACCGGCGCCAGCGTCTTCACCTGCTGCAGCGGAAGAAGCACCGCCATTC------GCCAGCAGCTGTTCCAGCAGGGAGTTGGTTTTTTGTTGTTCGGCCAGCAGCTGTTCAAAAATACCTGACATAGTTAAATCCTC-GTTCGGT--TAATTTGGGTTTGTCGTGTTGACGGTTTGGAGTATGGACTAAATGCCGAATTAC-GTCAAACGGTTTTTTTCGAAGTTTTTTGATTTGGTGCCTCAAAATCTTGTATTCTGGGCGTAAGATGGTTGCGGCACCGGACTAAATTGCCAATTTGACAGATTTACGAGCCGGATATACTATCAGCAAATCTATAACGCGCACACATGCGAGGACTTGGGCTATGCGATTTCCGAAATGGGCGTTAAACGACGACCGAATGAAGGTAAAATTCCTAATGACACAAGCGGCATTAGAGATCGATCCGAATGCCAGAATGGCGGATTTAGCGAAGGTCGCGAAAGTGAGCTATTCGACACTTTTATGGGCGACGCAGAATAACGTATCGAGCGCCGTGGCCGAAAAAATTTGCAACGCGGTACCGCTTACCGGAATCCGTCCCCACTGGCTGACTAACCCTTCTTGGATCAAAACGGACAGCGAAACAGGGGAAATCCTCGAATGAATTACTGGCAAGAGTATGGCGAAACGCTTTGGGTGAATGGGTACACCGTTGTACCTATCTACACCCCGGACGCCGATAAGAAGGGCGCGGGTAAACGCCCCATCGGTAAAGATTGGGAAAGAACAATTAACGATAAGGCGCAGATCCAGCGTTGGGCGGAACGCTACACGAAAAACGGCATCGGGATTCTGACCAAATACACCCCGGCGGTTGACATCGACATTTACGATAAAGACGCCGTGGCGCATATGGCGGATTGGGTGCTGGAGAATGTTGGCCGAGCGCCATGTCGTATCGGACGGGAGCCAAAGAAACTCTTTCTGTTCAGGACGGAATCGCCATTCTCGAAAGTGAAGTCGGGAGTATGGGAAGACGACTTCGGCCAGCGCCATGCGGTTGAGATCCTCGCTGACGGACAGCAGTTCGTCGCCTACGGTATCCACCCCGACACCAAGCGCGATTATTACTGGCTTGACGACGAGAACCCGCTGAACAACGCAGCCGATCTCGACCTCGAAGAGATCAGCCTCGATACCGCGCGTGAAATCGCAGCGGAGTTTGACCGTTACGCCAAAGAACAGGGCTGGACGATGGTCAAGCGACCGATGAACGGATACGAAGCGGTCGGCATAGCAGATGAAGAGGATTGGGCTGCTACGGCGGGTATCAGGAAATGGGACGGAACGTACGAAGACCTGCGCGAACTCGTCATGAAGTACCCGAATCCGGAAAACTATGAGAACTACATCAAGGTTCTTGCCGCGCTGCAAATATCCTGCCGGGATCAGGACGAAGCAAAGTCCATCGCACGTGAATGGGCCATGCAGGCTCATAACTTCGACGACGGTGACTTCGACTATAAATGGGACAAAGGCTTCTCGCACAACGCATCCCGCCTCGTAACGTTAGGGTCGATCATCGCCGAAGTGCGTGAAATCGAGAAAGCCGAGCAGGAAGAGAAGGCCATCGAGTACCGCGAGGCATTTGCCGAGTGTACTGACGAGAAAGACTGGAACGCATGGGCTGAATCCCTCCGTAAAGAGCCTATTTTCGGCATGACCCGCAAGACAATCGTCCAGGTTGCAGCCGAAGCGTACCTACGGATCAAGAATTATCGGATGACTGCAAGCGATAAAAAAGAGCAATTAGGCTTCGATTATGGCTCAAAAGAAATGCCGATTTGGCTGAAAAAATTCGTTTTTTCGGAAGAAAACGACTGTTTTATCGATAAAACGACAGGATCGTACATTTCTAAAGGGGCTTTCGACTTCGCGTACGCAAATATGTGCAAATTCGAGGAAGAAACGATTAAACCCGTCACTTTTGCCTCGCTAGTAAGGCCGATCCCTGTCGTTTGTGACGCCATGTACTACCCGGCGATGCACGGTGATATGGAAGAGACGTTGTGGAAGCCGAAACCCGGCATCAACGGTCCGGAATTCTTTATCGACGAATCGGGTAAGACGTGGCTCAATTCTTTCGACCCGGATTCCATTCCTGAGCCTGCCGACGAACTCTCACCGTACGATAAAAAGGCGGTGGAGATAATCAAGGACTTCTTCGTAGTGCTTTTCCCGAATGACAAGGAACGCCGATACGTCATGGACTGGATGGCTTGGATTATCCAGCACCCGACTAAGCGTATCAACTACTCGTTACTGATTCGCGGCGCTCACGGTTCGGGTAAATCGACGTTAGGCGTGCTCATGTCGGCCATGTTAGGTCGCAAAAACGTGGGTTACGTGTCAAACACCGTGATGAACGGCCGTTTCACCGACTGGGCGGAAGGCCACATCCTGAAAATCGTGGAAGAAGTGTACGATAAGGGCGACCGATACAGCGCCATCGAACGGCAGAAAGAGTACATCACCAACGACCGTTTTCAGGTGGAACCGAAAGGCCGCAAGCCAAAGGTTGTCGTGAACACCAGCAGCAAAATGATGTTCACCAACCACTTTAACGCGTTGCCTCTCGATGAAAACCAGCGTCGTTATCTGGTGGTGTCCACACAGGCGGAAAATCATTTGGACATGGAGCGGGTATATGGGTCTAAGGCAGAACGTTCGCGGTTTTTCAAGAACGTGTACCGGGCGATCGATAACCATGTACCGGCGTTGAAGAAATGGTTCCTTGATTGGGAGATCAGCCCGGACTTTGACCACAAAGGTCACGCCCCCCAGGACACCGAAGCATTTTCGATTATGGCGGATGCTTCAAACGACGGCGTGGAAGGTGCGGTGGTATCTATGTTGCGAGAAGG-GACGACACCTGGCGTCCATCGGGACATCATCTTCGTGCCTGCGTTGCGAGACGCATTCCTTGAAACCGAAGACGTCGAAATGCCGAAGACGTCTCGCCTTAAAAACATGCTTATGGAGATTGGATTTAAGCCTGGAGGCGTACTTAAATTCGGCGGAAAGTCAGGGCGTGTGTACGTCAGAAAGCGGGTGAAAGGTGCGTATGACGAATCCGGAAAACTGAATTCAGAATGGGCGCAAAAAACGTTGAAAAAGCATAACGCTGAGGTGGAAAAAATCATC--AGTAA-CGT-TACGCATAGCGAGTGGGATGACGAAGTTTAACAGACATAAAAAGGCCGGGGGATCCGGCCTTACTTTT</Hsp_qseq> + <Hsp_hseq>AAAACGGCCCCCCGAAGGGAGCCGA--TGCGGGGCGAAAGATTAAACGTCGTCTTCTTCGCCGTTACCGCCTTCGTCTTT---TTCAGCCAGTTTGGCTTCACACATTTCGACGATTTCGTCGAAGTGTTCTTCCTTCGCTTCCGCGACTTTCGCGAGGCCGAAGTGAGCGGTGATTTTCTTGGCTTCCGGCGCGCCGAACGCGTCTTTAACCGCAACCACAGCCGCGACTACTTCGTCTTTGGTGTGTTTCGGCTTG---GCCGCTTTGGTTTCAGTTTTGGCTTTAGAGCCGCCTTTCGCGCCGCCTTTGGTGGTGGTTTTTTCGGTGGTTTCG-CTGC--CAGCGTCAGTGTTTACCGCGCCGCCTTTCAGTGCTGCCAGAACGCCTTCCAGCAGGGTGTTGGTTTTTTGTTGTTCAGCCAGCAGTTGTTCGAAGATACCAGACATAATTTTCTACTCCGTTAAGTGTTTAAAAGGTCGTGTCGTGTTGACGGGATGAAGTATGGCCCAAATGCCGAATCACTGTCAAACACTTTTTT-CGAAATTTTTTGATTGGGTACCTCAAAGCCTTGTATTCCGGACGTAAGATGGTTGCGGTACCCGACTAAATGGCCAGCTTGACAGATTTACGGGCCGGATATACTATCCGCAAATCTATAACACGCACACATGCGAGGGCTTGGGCTATGCGATTTCCGAAATGGGCTTTAAATGACGACCGGATGAAGGTCAAATTTCTAATGACACAAGCGGCATTAGAGATCGATCCGAATGCCAGAATGGCGGACTTAGCGAAGGCCGCGAAAGTAAGCTACTCGACCCTTTTATGGGCGACGCAAAATAACGTATCGAGCGCCGTGGCCGAAAAAGTTTGCAGCGCGGTACCGCTTACCGGAATCCGCCCCCACTGGCTGACTAACCCTTCTTGGATCAAAACTGACAGCGAAACAGGGGAAATCCTTGAATGAATTACTGGCAAGAGTACGGCGAAACGCTTTGGGGGAATGGGTACACCGTTGTACCTATCTACGCCCCGGACGCCGATAAGAAGGGCGCGGGTAAACGCCCCATCGGTAAGGATTGGGAAAGAACAATTAACGATAAGGAGCAGATCCAGCGTTGGGCGGAACGCTACACGAAAAACGGCATCGGGATTCTGACCAAATACACCCCGGCGGTTGACATCGACGTTTACGATGAAGACGCCGTGGCGCATATGGCGGATTGGGTGCTGGAGAATGTTGGCCGCGCACCATGCCGTATCGGCCGGGAGCCAAAGAAACTCTTTCTGTTCCGGACGGAATCGCCATTCTCGAAAGTGAAGTCCGGCGTATGGGAAGACGACTTCGGCCAGCGCCATGCGGTTGAAATCCTCGCCGACGGCCAGCAGTTCGTCGCTTACGGTATCCACCCGGACACCAACCGCGATTATTACTGGCTCGACGACGAGAATCCGCTGAACAACGCAGCCGATTTCGACCTCGAAGAGATCAGTCTCGATACCGCGCGTGAAATCGCGGCGGAGTTTGACCGTTACGCCAAAGAGCAGGGCTGGACGATGGTCAAGCGCCCGATGAACGGGTACGAAGCGATCGGTACCGCTGACGAAGAGGATTGGGCGGCAACGGCGGGTATCCGGAAATGGGACGGAACGTACGAAGACCTGCGCGACCTCGTCATGAAGTATCCGAATCCGGAAGACTATGAGAACTACATCAAGGTTCTGGCCGCGCTGCAAATCTCCTGCCGGGATCAGGAAGAAGCGAAATCCATCGCACGCGAATGGGCCATGCAGGCACATAACTTCGACGACGGTGACTTCGAATATAAATGGGACAAAGGCTTCGCGCACAACGCATCACGCCTCGTAACGCTAGGCTCGATCATCACCGAAGTACGTGAAATCGAGAAAGCCGAGCAGGAAGAGAAGGCCATCGAGTACCGCGAGGCGTTTGCCGAGTGTACTGACGAGAAAGACTGGAACGCATGGGCCGAATCCTTCCGTAAAGAGCCGATTTTCGGCATGACCCGTAAGACGATCGTCCAAGTCGCGGCCGAAGCGTACCTGCGGATCAAGAATTATCGGATGACTGCGAACGATAAAAAGGAGCAATTAGGCTTCGATTATGGCTCAAAAGAAATGCCGATTTGGCTGAAAAAATTCGTTTTTTCGGAAGAAAATGACTGTTTGATCGATAAAACGTCCGGATCTTACATTTCTAAGGGCGCTTTCGACTTCGCGTACGCAAATATGTGCAAATTCGAGGAAGAAACGATTAAACCTGTCACTTTTGCCTCGCTGGTCAGGCCGATCCCTATCGTTTGTGACGCCATGTACTACCCGGCGATGCACGGTGATATGGAAGAGACGTTGTGGAAGCCGAAACCGGGTATCAACGGCCCGGAATTCTTTATCGACGAATCCGGTAAGACGTGGCTAAACTCTTTCGACCCGGATTCCATTCCGGAGCCTGCCGACGAGCTTTCGCCGTACGATAAAAAGGCCGTGGAGATCATCAAGGACTTTTTCGTCGTCCTTTTCCCGAATGACAAGGAACGCCGATACGTCATGGACTGGATGGCTTGGATTATTCAGCACCCGACGAAGCGTATCAACTACTCGTTACTGATTCGCGGCGCGCACGGTTCCGGTAAATCGACGTTAGGCGTGCTCATGTCGGCCATGCTCGGCCGCAAAAATGTGGGTTACGTGTCAAACACCGTGATGAACGGCCGTTTCAGCGATTGGGCGGAAGGCGACATCCTGAAAATCGTGGAAGAAGTGTACGACAAGGGCGACCGCTACAGCGCCATCGAGCGGCAGAAAGAGTACATCACCAACGACCGTTTTCAGGTGGAGCCGAAAGGGCGCAAGCCAAAGGTTGTCGTGAACACCAGCAGTAAAATGATGTTCACCAACCACTTTAACGCGTTGCCACTCGATGAAAACCAGCGTCGCTATCTGGTGGTGTCCACGCAGGCGGAAAATCATCTGGACATGGAGCGCGTATATGGGTCGAAGGCGGAACGCTCGCGGTTCTTCAAGAACGTGTACCGGGCGATCGATAACCACGTCCCAGCGTTGAAGAAATGGTTCCTTGATTGGGAAATCAGTCCGGAGTTTGACCACAAAGGCCACGCCCCGCAGGACACCGAGGCATTCGCCATTATGGCCGACGCTTCAAATGACGGAATTCAGGGAGTTATCGTACAGTTACTTCGGGATGGAGATG-CACGCGGTGTATCTAACGACGTGATTTTTACCCCCGACCTGAAAAACGCGTTACTGGAGTCCGAAGATATTGAATTTCCGAAGTCGAACCGACTGAAAAACATGCTCATGGAATTGGGGTACAAACCCGGCGGGCTGATTAAACTGGACGGTACCACTGGACGTGTTTACGTCAGGAAACGTGTAAAGGGGGCGTTTGACGAAAACGGAAAACTGAACGCAGATTGGGCGAGGAAAACGCTCAAAAAGCACAACGATAACGTGGCGAAAATC-TCGAAGAAACCGTCTGACCCTTTCGACGACGAAGACGAAGTTTGACACA-ACAAAAAGGCCGGGAAATCCGGCCTTACTTTT</Hsp_hseq> + <Hsp_midline>|||||||||||| | |||| ||||| | | | ||||||||||||||||||||||| ||| || | || |||| ||| ||||||||||||||||||| || | ||| |||||||||||||||| |||||||| |||| ||| || |||||||| | |||||||| || ||||||||||| ||||| || |||||| || ||||| || ||||| || ||||||||||||||||||||||||||| ||||| || |||||| |||| | | | ||| ||||||| |||||| || ||| | || || | | || ||| | || ||||| ||| ||||| | ||||||||||| |||||||||||||||||| |||||||| ||||| || ||||| |||||| || | ||| ||| || | | || |||||||||||||| || ||||||| | ||||||||||| || ||||||| |||||| |||| |||||||||| ||| ||||||| ||||||||| || |||||||||||||||| ||| |||||||| |||| |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||| | || || |||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||| |||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||| | |||||||| || |||||||| ||||| | | || | | ||| | | || || || || | ||| || || | ||| | || || || | || | |||| || || || ||||||| | ||| | |||||| || || || ||||||||||| ||||| | || | || || || || | ||||| | | ||| | | || ||||| |||||||| || || || || || |||| ||||||| |||||||||||| |||| |||||| |||||| | |||||||| |||| | | |||| |||||| || || || ||| | | | ||| || |||||||||| ||| | | |||||||||||| ||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>1182.49</Hsp_bit-score> + <Hsp_score>1310</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>31520</Hsp_query-from> + <Hsp_query-to>35016</Hsp_query-to> + <Hsp_hit-from>26038</Hsp_hit-from> + <Hsp_hit-to>22551</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>2427</Hsp_identity> + <Hsp_positive>2427</Hsp_positive> + <Hsp_gaps>125</Hsp_gaps> + <Hsp_align-len>3555</Hsp_align-len> + <Hsp_qseq>CCGCCGCCGCTTCCTTGGTTCATTATGTTATTCGGGTCATCTTTGGACAGGATCTGCTCGCCTTTCTGCGCGATGATTGGTACCTCATCCGATTT-AAGCCCGGGAAGACCGCCATCATGGAAGCGCGGCGCCCCGACAAACAAAGACGGGCTGACGGAGTTTTTCCGCTGCTGGCCACCCGACGTTTTGCTGCCGACCATGCCACCGTTGTGTTTAGCCGCTACGCCGCCCATGGATGTTGCTGCTGCACCGATGCCGCCGCCTATACCCGCCAGGGAGTTCAGTATCATCTGCTGCAGGATCGCCTGCGCAATCTTCATCAGGAAGTCCGCGAAGAACTTAGTAACTGTAGCGCCGAGACTGCGGAACGCATCGCCGAGGGACATCGTGCCGCTAAGGACTTGGACAAGGCTATC-CGTAACCGACTGTAGCC----CCGTCGCCAGCCCATCCAGAACGCCCTGCACCACCGTACTATCCATCTGGGTGAATGTGCCGGTGACGTCATTCAGCCCCGCGCGGATCTGCGCAATTTTGGCCATGA-GCGCCGCATAGTCTTCCGGCGACAACA---CATTGCGGAAT-TTCTGCGCCAGCTGGTCCAGGGTGTTCG-CCGACTGCAGCAGGTTCACGTTCATCGTCGCATACAGCTCGGACGTCTGCTTCACCGCCTCATCTTCGGAGATGATGCCCGCCTGACGTTTGGCGTTAATCTCATCCAGCAGGCTTTTCTTCGTTTCCTGGATCGCGTTAAGCTGGTCTTCCACGCGCTTGATTTCTTCCAGCTTCGCCTGCGTGGTGGTGTATTCGAGATTCCGCTTGCGCAGGTCTTCGAACTTGCCTGCCAGTTCTGCCCCGCCCGAACCGAGTTTTTTCGACTTGGCGATCAGCTGGTCGTACTGGGTATTAACGGCCTGCAGTTTGGCCTGCAGCCGGTCATCAAACGTGGCATTCGGGTCGACCTTAGACTGCTTAACGCCTACGGCATCATCCAGTTTTTCATACTGCGCGGTCAGCGCCTCTAGCGCGTTTTCCTCGCGCTTCGCGGCATTCTCCCGGGCCTT-GCTGC--CGTTTTCCATGGCGTTATAGGAATCCGTCTCCGCTTTCTTCCGCGCGGCCACAATCGCGTCGAGGCGCTTGATCATCGCCGCCCCTTCGTTACCACCGATGCCCTTCGCACGCTGATACTGCGGCGCGAATTCCTCGTCAATGAGTTTCAGCCGGCCGGGAAGGTTTTTACGCTGCAGTGCTTTCTGCGCGGCAACGCCGGCCTTCTTGGCCTGTTCTTCCATCTTGGCAAGGTCTTTCGTCATGCCTTTGATGTCGCGGTCGCGCTGGGTGACTCCGGTTTCCGGGTCAGCGGTGTACTGAAAT---TGAGGATTCGTGATCGCCTTAATATCGGCCATCAGC--GTCGCCACCTGACCACGGATAACATC---CACTGCGGTCTTGTTGGTGTCGACCATGTTTTTGTTTAACTCGGCCCATTTTTTATCGACATCATCCCAGACCCTACCCGTGGACTCCAGGAAGTCGCGGTGTTCTTTCGTCAGGTCTTCGGCCA-GGCCATCCGCCCAGTTCGCCAGCGTTTCGCCGACACCGGGGATCAGGCGCAACACGTCGGCAATCCAGCCCATGATCATCTTCGTGGCCGTGGCGAATTGCGTCGTGACCGGGCGCACCC---AGCCGATCAGGATGTCGTACAGCATCGTCGGGATTGAATCCCCGACCGCCAGTAGCTGATTGCCCAGGTTTTTGTAATCCCGGATGACCTCGTCAACGCCCTGCCGGAAGGTTGACGACTGGTCGTACATGATTGAGCCGATGTCGTATGCGATAAGCGCTGCGCCGACAAATGGGATGATGCGCAGCAGCCCGCGTAATGCGACGCCAAGAAGCCCGACCGCACCTTCTGCGGT-AGCAAGACCTGTCGCCCATGACATAAGGC-CCGT-ATAAACC--GCCCGGATAAGCGTCACGCCCCCTTT-CAGCACAGGCAACATCGAACGGATGGACCCGACTA-GCCCCAGAACCATCCGCGTGATTTTAAGGCCGGCCAGAACGCCGAGCACCGTGATAACCGTGTCCAGGTTGTCAAT-CAG-ATATCCGAGAGTGTCCGCCACGTAGCTGAATGCCGCACCCAGTTTTACCGCGGCCTCCTTCCCATCCGAGCTGTTAAGGAAGTCCGTGACCTTCTGCAGCAGCTGAACGTATGCGTCGATATAACCAGAGTCCGCTAACGCCAGCTGGAACGCATTCATCGCGTTACGTGCGCGGGCTTCCATCGCGTCTACGCCTTTGCTTGCGGTTTCCAGCTGGGCATCAATAGCCTTAGCCTGTTCACGGGCGAAGTTGATAACCGCTTCACCTGAAACCTCGCCGTTTTCCATCGCCTTCATCAGCTGCGCCGTGGTCATGTTCATGCCTTTCGCGAACAGCGCCACCGCCCCGGGTAAACGTTCGCCCAGCTGGCCGCGCAGTTCTTCGGCGTACACCTGCCCTTTCGACAGCATCTGTTCCAGTGCGCGGAAAATACCGTTCATATCATCCGCGGAGAGGTGGAAAACGCGACCGGCTTTCGCCACGCTTTCGAATATGAATTTTGAGTCCTGCAACGACAGACCGACGGCTTTCGCCGCTACCGCGAACCGGGTATACGAGTTCGATACTACACCGATATCAATACCCAGCTTGTCGGACAGCCCGAGCATATATCGCCATTCGTCGTTAAGGGCCGCCTGGCTTTCCCCAACAACGGTGGAGATCTTAACTAACGCCTGCTGGCGCATCTTATACGCCCCCACCGCACCGGACGCCTGGTTAAGAGCACCCTGCACACCGACGTATGCCGTAGCGAGGCCCAGGACTTCACCGCGAATACGTTGCAGCATTGATAACGTGGTTCGTCCCTCATCCCGGAAAAGGGAGAAGGCTTTTGCACCGTCTCGCGTGGCGCCCGCGTTATTCCGCAAGGCTTGC----GTCAGGGAGTTTATCGAACTGGTGGTCTGACGGCTTGTGGAGATCAGC---GCTTGCTCTGCGCTATTCAAATTACGGGTATCGATGCCCGCCGACCGCAAAGCCGATTGTGTCGTACGCGCAGCAGTCCCTGTGTCCCTCAATGACCG-GGCGGCCGCCGCAAGTCTCTGCTGTGCCGCCTGCATCCGGTTTGACAATTCGCCGGTATCGGTAGTGGCGGTTCGCATCTGCTGCGCTAAACCTTG-TACCGCCTCCATTGC---TGTGCGGTACTCCGTTCGTGCGGCCCGGACTGCTGCCACCTGCTGACGGTACATATCGATCTGCTGCGCCATGGCCGAAACGCTTTTATTCGCTTCGTTAAGCTGGCGGA---TCTTACCGGTGATATCTGTAACCTTTTTGCCGCTATT---TGCTATCTCCGTCGCAA----GTGTCGACACCTGCTGCTGCAGGCCAGACAGCGTCCGGCGCGCCGCCTCCGCCGGGCTTACGATTTGCTGGATTTGCGACACCAGCGGCCCCATCTGCGACGTCGCCTG</Hsp_qseq> + <Hsp_hseq>CCGCCGCCGCGCGACTGGTTAAGCACGTTGTCCGGGTCATTCTTGGACAGCACCTGTTCGCCTTTTTGCAGAATGGTCGGAACCTCGTCAGAACGCAAGCCCGGCA-GACCGCCGTCGTGGAAGCGCGGGGCATTAGCGAACATGGCCGGGCTGATACTGCCCTTCATCTGCGTGCCGCCCGTTGTCTTGCTGCCTACGGTTCCGCCATTGTGTTTCGCCACCACGCCGCCGAGGGCCACCGCCGCAGAACCGATACCACCGCCCATCCCGGCGATTGCGTTGAGCGCCATCTGCTGCAAGATTGCCATTGCGATCTTCTGCAAGAAGTCCGCGAAGAACCGCGCCACGGTAACGCCGAGATTCGAGAAGGCATCACCAATGCTTTGCGACCCGGCCACGAC-----CAACGCCATTTCGTCAACGATGGAAGACAGCGCCGTGCTCATACCGTCCAGCACGCCCTGAACGACAGTCGTGTCCATCGTCGTGAAGGTGCCAGTGACATCCACCAGCCCGGCCTTGACGGACGCAATCTGCGCCATGATGCGGCTGA-ATTCTTCCGGCGACATCGTGTCTTT----AATCTTCTGCGCGAAGGCGTCAAGC-TGCTCGGCCGACGACGCGATGCCCGCATTCATGTTCTGGTACAGCGCCACCGTCTGCGAGACTGCTTCGTCTTCCGAGATAATCCCGGCCTGACGCTTGGCGTTGATTTCGTCCAGTAGGTTTTTGCGCGTCTCCTGCTGCGCGTTTAACTGATCCTGAATGCGTTTCAGTTCTTCGAGTTTGGCCTGCGTGGTCGCATATTCCAGATTGCGCTTGCGCAGGTCTTCGAACTGCCCGGCCAGATTTTCCCCGCCAGCGCCGAGTTTCTTCGACTTGGCGATCAGCTGATCGTACTGCGTATTGACGGCGGCCAGTTTGGCGGCCAGACGGTCGTCAAACGTGGCATTCGGGTCAATCTTAACTTCCTTCACGCCGACGGCCGCATTCAACTCGTTGTACTTGTTGATCAGCGCCTGTAATGCGTTTTCCT---GTTTCTTG--ATGCCACCCGTCGTACGCTGCTGCGAATTGAACAGCGT----------CGTTTCTGCCTTCTTGCGCGCCGCTACAACGGCGTCGAGACGTTTGGTAAGGGCTTCCCCCTCCGAGCCGCCGATCGACTTAGCGCGGGCGTACTGCGGCGCGAATTCTTCGTCAATAATGGCTAGTCGGCCGGACAGGTTCTTCCGCTGTTCCGCTTTACGCGACGCAACGTCCGCCTTCTTGGCCGCCTCTTCCATCTTGTTCAGTTCTTTCGTCAGGCCCGCAATTTCACGGCTGCGCTTCGTGACGCCTGTTCCCGGGTCTTGGGTAAACTGGAAGCCCTCGCCCTTCGTGATAGCGGCCATGTCGGCGGCCAGTTGGTTG--ACCTGCCCGCGAATCTTGTCAGTCGCATCGGCGTTCTTCG---CGACCATTTCGTCGTTCAGTTTCACCCACTGCTTATTGACGTCACCCCAAATACGGCCAGTCGATTCGAGGAAGCCACGCTGCTCTTTCGTCAGGTCATCCCCGATGGACATG-GCCCAATCTGACAGCCCTTGACCAACTCCCGGGATCAGTTTCAGGACATCCGCAATCCACTTGATGATCGCCCGGGTGGTGTCGGCGAACATCGTGGTAACAGGTCGAACGATAGACACGGCCAGA---TCGTACAGCAGCGCCGGGATGGACTCGACGACGGCCACCAGTTGATTGCCGAGGTTCTTGAAGTCCCGGATAATCGCGTTGACTGCCTCGCGGAAGGTCTGCGACTGGTCGTACATGATGGCACCGATGTCATAGGCCAGCAGCGCCCACCCGACAATCGGGATTAACCGGGTCAGACCTTTCAGCGCCACGCCGAGAAGACCGATAGCCCCCTGCGCCGTGATCATT--CTGGCCGCTACACCTTCCAGCACCGTGATGATGCCAGCGCCGATTTTCGACA-GCGTACTGAACAGCGGCAGCAAGTTTTTAAGGCCGGA---GATCATGCCGCCGATGAA-CTGCACCACTTTCAGCCCGGCCAGTACGCTTAACGCGGTGATCAGCGTGTCCACGTTCTCGATGCACCACGTC--ACTGCGTCGGCCAACATGCTAAACGCCTCGCCGAGTTTAACGGCGGCCGCCCGGCCATCCTCGCTGTTCAGGAAGTCGGTGATCTTGTTAAGCATCTGCACGTACGCTTCGATAAAGCCTGCGTCGGCCAATGCCAGTTGAAACGCGTTCATGGCGTTACGGGCGCGCGCTTCCATCGCATCGACACCTTTCTGCGCCGTAGCGAGTTGCGCGTCGATTGCTTTGGCCTGCTCGCGGGCGAAGTTGATAACCGCCTCGCCAGTGATTTCCCCGTTTTCCATCGCCTTCATCAGTTCGGCGGTGGTCATGTCCATGCCTTTTGCGAACAGCGCGAAAGCCGCCGGGAGACGTTCACCCAATTGGCCGCGCAATTCTTCCGCATACACCTGACCCTTCGACAGCATCTGTTCCAGCGCGCGGAATACGCCTTCCATGTCATCTTGTGACAGGTGGAATACACGGCCCGCTTTCGCTACGCTTTCGAAGATGAACTTTGAGTCCTGCAATGACAGGCCGACCGCTTTCGCGGATACGGCGAATTTCGTGTACGACTGTGACAGGGTGGTGATGTCGATCCCGAGCGTATTCGCCAGACCGACCATGTATTCCCACTCTTTGTTGATGGCCGCTTGGCTGTTACCCACCACGTTCGCAATCTTGACCATCGCCTGCTGACGGTTCTTGTACGCGTCGATCGCGCCGCCCGCCAGATTGATAGCCCCCTGAAAACCGACATACGTGGTCGTCAGCGCCAGCACTTCCCCGCGAATACGTTGCAGGAAGGACAGCGTGGTACGGCCCTCGTCGCGGAATAGTGACCACGCCTTCGCCCCG--TCGCGCGCCGCTTG-GCTGTTACGGTTGG-TCGCGGTTGACAGCGTATTAAGCGCTGCGGCCGATTGTTGGCTGGTGGAGATCAGCCGGGCTTCCGCATCG---GACAGGTTACGCGTGTCCACCTGAGCAGCACGTAATGCGGCTTGGGTAGACCGGGCGGCCGTAGCCGTGTTTCGC-ATGGCCGTCGCGGCTGCGGATAGCCGTTGTTGGGCGGCCTGCATCTGAATACCTAAAGCACCCGTATCAGTTGTCGCGGTGCGCATCTGCTGTGCTAA--CTTGATGACGTCT-TGTCGCGCTTGT-TGGTATTCAGTGCGGGCGTTCCGAAGGGTTGCCACCTGCTGACGGTACAGGTCGATTTGCTGCGCCAGCGCCGAGACGGTTTTATTCGCCTCGTTGAGCATTCTTACTTTCTGAGCGACGTTCTCCACTTCCTT------GCTATTGCGAGCCAGTTCTGCGGTAACGCCGTGT----ACCTGATTCTCAAGGCCGGACAGCGTGCGGCGCGCCGCTTCTGCCGGGCTGACGATGGTCTGGATCTGCGTGCCAAGCGGCCCGAGTTGCCCGGTTGCCTG</Hsp_hseq> + <Hsp_midline>|||||||||| ||||| | | ||| | |||||||| |||||||| | ||| |||||||| ||| ||| | || ||||| || || |||||||| | ||||||| || ||||||||||| || | |||| | |||||||| | ||| |||| ||| |||| || |||||||| || | || || |||||||| ||| | |||||||| | || || || | |||||| || ||||| || || || | | ||| || ||||||||||| ||| ||| || |||||| || |||||||||||||||| | || ||| |||||||| | ||| ||||| || | | || ||| | ||| ||| || || ||| | ||| | || | |||| || || ||||| |||||||| || || || | |||||| ||||| ||||| ||||| || |||||| || || |||||| | ||||||| ||| | | | ||||||||||||| | | || ||| |||||||| | ||| || || ||| ||||| | | | | | ||||| || |||||| | ||||||| || || || ||||| ||||| || || |||||||| |||||||| || || ||||| ||| |||| ||| ||||| |||||| | ||| || | | ||| || | |||||| || || ||||||||||| | ||||| ||||| |||||||||||||||||||||| || ||||| | | ||||||| | |||||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||||||| ||| ||||| |||||||||||||||||||| | |||| | ||| ||||| ||||| ||| || | | |||| | ||||||||| || |||||||||| | ||| | || | || | | | ||||| || || | |||| ||| || || ||||| ||||| || |||| |||||||| || ||| | | || |||| || || ||||| ||| || || ||||||||||||||||| |||||||| | || ||||||| ||||| || ||||| ||||| ||| |||||| | |||||||||||| |||||||||||| || |||||||||| ||| || || ||| ||||| ||||| || ||| ||||||| ||| |||| || | |||||||| || || ||||| ||| || | ||||| || || || || | | ||| || || | ||||||| | | ||| | | |||| | |||| ||| ||| |||| | | || || || || |||||| | || || |||||||||||||| || | | || ||| ||||| | | |||| || || || || |||||||| || || || |||||||| |||||| | |||| |||||| ||| || || || || || | || ||| |||||||||| || |||||| || || |||| |||| || |||||||| ||||| ||| | |||||||| | | ||| || ||| |||||||| |||||||||||||||||| | |||||||| || || | ||||| ||||||| ||||| | || ||| || | || ||||| ||||| |||| || || | || || | || ||| | | | | | || |||| || | | || | ||| || || || || |||| |||| | | || ||| || | ||| | || | | || | ||| || |||||||| |||| | | | ||||| | |||||||| ||| || || || | || | | ||| |||| ||| || ||| | || ||||| || |||||| || |||||| |||||| |||||||| |||| ||| | |||| ||| ||||| || |||||| | || | ||| || || ||||| || ||||| ||||| |||||||| ||||| ||||||||||| || || ||||| || || | || || || || || || || ||||| || |||||||||||||||||||| || || | | || ||||||||||||||||||||||| | || |||||||||| ||||||||| ||||||||||| | ||| | || | |||||| |||| |||||||||| |||||| || |||||||| || |||||||||||||||||||| |||||||| | || | ||| ||||| || |||||||| || || || |||||||| ||||||||||| ||||| |||||||||||||| ||||| ||||| |||||||| | ||| ||||| || ||||| | || | ||| || || || ||| | | | ||| |||| ||| ||| ||| || | ||| | |||||| ||||| | || || ||| | | ||||| || | ||||||||| || |||| ||||| | | ||| ||| |||| | || | ||| ||||| | |||||| || | || | || |||| ||||| ||||||||||||||||| | || | |||||| || ||||| || ||||| || || | || || || ||| ||||| | ||| | | | || || || | || | ||| | || | || || | || |||| |||||||||||| |||| | | || || ||||| || || | || | || || || | ||| || | || || || || | |||| | | ||| ||| ||||| || | || | || || || ||||||||| | | || | || ||||| || || ||||| ||||||||||| ||||| |||| | || || | || ||| |||| || || || ||| ||| | | |||||||||||||||||||| ||||| |||||||||| ||||| ||| |||||||||| ||||| ||| | | ||| | || | | || |||| |||||| || | || | | || |||| ||||| | || ||||| |||||||| ||||||||||| || |||||||| ||||| |||||| |||| | |||||||| | ||| || |||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>545.904</Hsp_bit-score> + <Hsp_score>604</Hsp_score> + <Hsp_evalue>2.73123e-149</Hsp_evalue> + <Hsp_query-from>7159</Hsp_query-from> + <Hsp_query-to>8129</Hsp_query-to> + <Hsp_hit-from>52248</Hsp_hit-from> + <Hsp_hit-to>51278</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>719</Hsp_identity> + <Hsp_positive>719</Hsp_positive> + <Hsp_gaps>24</Hsp_gaps> + <Hsp_align-len>983</Hsp_align-len> + <Hsp_qseq>ATGAAAGTTAAAGGTTTTGAGAAAGTCATCATACTGCATCTCGGCGCGCTCTTTGGCGCCGCAAACGCTGG---CGAGAAGTCTGTAAAGAGTTTCCACCGCACGCTGCTGAACACGCCGAACATGGACGAAATGAGCGTCCATGAATTCGCCGCCGGC-CGTGTGAGCGACCGACTGGCGAAGCACGAAGTGAAAGACCCGATCG--GC----TATAAGACGATTGGCTTTGCGCCTTACGCGGACTACGTGGGCGGCAAGTTCGCCATGGGCATCCCGGGTACTAACGCCATCGTGCTGCAGGCCGAAAAGCGTGAACGCGTGCTGCCCGGGGTCAGCGTGCGCAACGAAGTGACGAAGCGCATGGACGCCTGGCGCGAGAAAGAGATCGAAGGCTGGGAGCCGACCCGGAAAGACTGGGCGCAGCTGAAAGACGATGTCGAAGCCGAAATGCTGAAAACCGCGCCTATCCGCCCGACCCGCTACAATGTGATCATCGCCGTCCCGTACGTCTACGTGTTCACCACCAGCGCCAAGACCGCCGAAGAGGTTAACGCCCTGCTGCGTGCCGCGTTCGGTACCTGGCCAGTGGAACACCTGCTGATCAATGACTTCGTGCTGCGTCAGTCAATGGAGAAGGTCGTACGCGG-CAGCATCGAGGGTATCACTGGCGACGACTTCATCCACATCAAGCACGATGACGGCGATGACGTGAAGTTCAAGGACATTGACATCCATAAGGACGAAGTGGTCCTCGACTACCTGGCGCGGCATTACACGGTTCGGGCGCTGAACATGCGAA-TCGACGAACGCGAGATGCGACCTGGCGTGGGCAACGTGTTCTTCCGCCTGACCGACAAGGCGATCATCTCCGGGATCCACATCGGCGAGGCGGACGTTGACGCCAACTATGAAGCCACCCTGGAGCGCTACAACAATGACAGCGGTACGTTCCTGACCTACATGGCCAACCTGTTCCA</Hsp_qseq> + <Hsp_hseq>ATGAAAATCAAGAGTTATGAGAAAGCCATTATCTTGCACCTCGGCGCGCTGTATGACGCGGCCAACGACGGTAACGAGAAG---GTCAAGCCGCTGCACCGCCTGATCCTGAACCTGCCGAACGTTGACGAAGAGGCCGTAACGGCTTTCGCGAAAGGAGCGTTT-AGCGATGCACTCGAAAAGCATGAAGTGTCAGATCCGCCGGAGGCGTCTTACAAGACAATGGGCTTTGCAGCGTACGGCGAAGAGGTTGACAGCAAGTTTGCGCTCGCCATCCCCGGAACAAACGCCATCGTCTTCCAGATCGAAAAGCGCGAGCGAGTGCTGCCCGGCGTTAGCGTACGAAACGAAGTCGTGAAGCGCATGGCCGCGTTGCGCGAGAAAGAGATCGAGGGTTGGGAGCCGAACCGCAAGGATTGGGCGCAGATGAAGGACGACGTGGAAGCGGAAATGCTGAAACACGCGCCTATCCGCCCGTCCCGCGTCAACGTCATCCTGTCCGCCCCGTTCGTGTACGTGTTCACGTCGAGCGCGAAGACGGCAGAAGAGTGCAGCGCGCTGATCCGTACCGCGCTCGGCACATGGCCCGTTGAACACCTCCTGCCGAGCGAGTATGAGCTGCGCCAGTTAATGCAGCGCGCGGTTCTCGGCCAGCA-GGACGGCATCAAGGGCGATGCATTTATCCACCTGAAACACGATGACGGCGACGACGTCAAGATGAAGGACACGGACATCTTCAAAGACGAGGCGGTGGTTGACCTGCTGTCCCGCCACTGGACTGTCCGCGCACTGGATCT-CGAAGTCGA--TACGC--AATGC--CCGGGCATCGACACCGTGTACTTCCGCCTGTCCGACAAAGCCATCCTGTCCGGTATCCACATCGGCGAGGCCGACGTTGATGCGAACTACGACGCCACGCTCGAACGCTACGGCACCGACGGCGGCCAGTTCCTGACCATGATGGCGAACCTGTTCCA</Hsp_hseq> + <Hsp_midline>|||||| | || ||| |||||||| ||| || |||| ||||||||||| | || ||| || |||| || ||||||| || ||| | |||||| | | |||||| ||||||| | |||||| | ||| | ||||| || ||| | ||||| ||| | ||||| |||||| ||| ||| | || || ||||| || |||||||| | |||| || | || | | ||||||| || | | |||||| || || ||||||||||| | ||| ||||||||| || || ||||||||||| || ||||| || |||||||| ||||||||||| ||| | |||||||||||||||||| || |||||||||| ||| || || ||||||||| |||| ||||| || ||||| |||||||||||| |||||||||||||||| ||||| ||| || ||| | ||| ||||| ||| ||||||||||| | ||||| ||||| || |||||| | ||| ||| | ||| ||||| |||| || ||||| || |||||||| ||| | || | | |||||| |||| |||| || | || | ||| ||||| || || |||| ||||| | || |||||| | || |||||||||||||| ||||| ||| | ||||||| |||||| || ||||| | ||| | ||| ||| | || || | || || || || ||| | | |||| |||| |||| |||| || ||| | | || ||||| |||||||||| ||||||| || ||| | ||||| ||||||||||||||||| |||||||| || ||||| || ||||| || || |||||| || ||| |||| |||||||||| ||||| |||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>31902778</Statistics_db-num> + <Statistics_db-len>102365819095</Statistics_db-len> + <Statistics_hsp-len>43</Statistics_hsp-len> + <Statistics_eff-space>5.88492035908107e+15</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +</BlastOutput_iterations> +</BlastOutput> +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/blastxml/merlin.gff Thu Mar 28 04:51:06 2024 +0000 @@ -0,0 +1,1230 @@ +##gff-version 3 +##sequence-region Merlin 1 172788 +Merlin GeneMark.hmm gene 2 691 -856.563659 + . ID=Merlin_1;seqid=Merlin +Merlin GeneMark.hmm mRNA 2 691 . + . ID=Merlin_1_mRNA;Parent=Merlin_1;seqid=Merlin;color=#00ff00 +Merlin GeneMark.hmm exon 2 691 . + . ID=Merlin_1_exon;Parent=Merlin_1_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 2 691 . + 0 ID=Merlin_1_CDS;Parent=Merlin_1_exon;seqid=Merlin +Merlin GeneMark.hmm gene 752 1039 -339.046618 + . ID=Merlin_2;seqid=Merlin +Merlin GeneMark.hmm mRNA 752 1039 . + . ID=Merlin_2_mRNA;Parent=Merlin_2;seqid=Merlin +Merlin GeneMark.hmm exon 752 1039 . + . ID=Merlin_2_exon;Parent=Merlin_2_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 752 1039 . + 0 ID=Merlin_2_CDS;Parent=Merlin_2_exon;seqid=Merlin +Merlin GeneMark.hmm gene 1067 2011 -1229.683915 - . ID=Merlin_3;seqid=Merlin +Merlin GeneMark.hmm mRNA 1067 2011 . - . ID=Merlin_3_mRNA;Parent=Merlin_3;seqid=Merlin +Merlin GeneMark.hmm exon 1067 2011 . - . ID=Merlin_3_exon;Parent=Merlin_3_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 1067 2011 . - 0 ID=Merlin_3_CDS;Parent=Merlin_3_exon;seqid=Merlin +Merlin GeneMark.hmm gene 2011 3066 -1335.034872 - . ID=Merlin_4;seqid=Merlin +Merlin GeneMark.hmm mRNA 2011 3066 . - . ID=Merlin_4_mRNA;Parent=Merlin_4;seqid=Merlin +Merlin GeneMark.hmm exon 2011 3066 . - . ID=Merlin_4_exon;Parent=Merlin_4_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 2011 3066 . - 0 ID=Merlin_4_CDS;Parent=Merlin_4_exon;seqid=Merlin +Merlin GeneMark.hmm gene 3066 4796 -2177.374893 - . ID=Merlin_5;seqid=Merlin +Merlin GeneMark.hmm mRNA 3066 4796 . - . ID=Merlin_5_mRNA;Parent=Merlin_5;seqid=Merlin +Merlin GeneMark.hmm exon 3066 4796 . - . ID=Merlin_5_exon;Parent=Merlin_5_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 3066 4796 . - 0 ID=Merlin_5_CDS;Parent=Merlin_5_exon;seqid=Merlin +Merlin GeneMark.hmm gene 4793 5317 -682.565030 - . ID=Merlin_6;seqid=Merlin +Merlin GeneMark.hmm mRNA 4793 5317 . - . ID=Merlin_6_mRNA;Parent=Merlin_6;seqid=Merlin +Merlin GeneMark.hmm exon 4793 5317 . - . ID=Merlin_6_exon;Parent=Merlin_6_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 4793 5317 . - 0 ID=Merlin_6_CDS;Parent=Merlin_6_exon;seqid=Merlin +Merlin GeneMark.hmm gene 5289 6431 -1457.525863 - . ID=Merlin_7;seqid=Merlin +Merlin GeneMark.hmm mRNA 5289 6431 . - . ID=Merlin_7_mRNA;Parent=Merlin_7;seqid=Merlin +Merlin GeneMark.hmm exon 5289 6431 . - . ID=Merlin_7_exon;Parent=Merlin_7_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 5289 6431 . - 0 ID=Merlin_7_CDS;Parent=Merlin_7_exon;seqid=Merlin +Merlin GeneMark.hmm gene 6428 7180 -968.015933 - . ID=Merlin_8;seqid=Merlin +Merlin GeneMark.hmm mRNA 6428 7180 . - . ID=Merlin_8_mRNA;Parent=Merlin_8;seqid=Merlin +Merlin GeneMark.hmm exon 6428 7180 . - . ID=Merlin_8_exon;Parent=Merlin_8_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 6428 7180 . - 0 ID=Merlin_8_CDS;Parent=Merlin_8_exon;seqid=Merlin +Merlin GeneMark.hmm gene 7228 7857 -809.330137 + . ID=Merlin_9;seqid=Merlin +Merlin GeneMark.hmm mRNA 7228 7857 . + . ID=Merlin_9_mRNA;Parent=Merlin_9;seqid=Merlin +Merlin GeneMark.hmm exon 7228 7857 . + . ID=Merlin_9_exon;Parent=Merlin_9_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 7228 7857 . + 0 ID=Merlin_9_CDS;Parent=Merlin_9_exon;seqid=Merlin +Merlin GeneMark.hmm gene 7857 8252 -515.006678 + . ID=Merlin_10;seqid=Merlin +Merlin GeneMark.hmm mRNA 7857 8252 . + . ID=Merlin_10_mRNA;Parent=Merlin_10;seqid=Merlin +Merlin GeneMark.hmm exon 7857 8252 . + . ID=Merlin_10_exon;Parent=Merlin_10_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 7857 8252 . + 0 ID=Merlin_10_CDS;Parent=Merlin_10_exon;seqid=Merlin +Merlin GeneMark.hmm gene 8340 8753 -522.529341 + . ID=Merlin_11;seqid=Merlin +Merlin GeneMark.hmm mRNA 8340 8753 . + . ID=Merlin_11_mRNA;Parent=Merlin_11;seqid=Merlin +Merlin GeneMark.hmm exon 8340 8753 . + . ID=Merlin_11_exon;Parent=Merlin_11_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 8340 8753 . + 0 ID=Merlin_11_CDS;Parent=Merlin_11_exon;seqid=Merlin +Merlin GeneMark.hmm gene 8787 8951 -212.019038 + . ID=Merlin_12;seqid=Merlin +Merlin GeneMark.hmm mRNA 8787 8951 . + . ID=Merlin_12_mRNA;Parent=Merlin_12;seqid=Merlin +Merlin GeneMark.hmm exon 8787 8951 . + . ID=Merlin_12_exon;Parent=Merlin_12_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 8787 8951 . + 0 ID=Merlin_12_CDS;Parent=Merlin_12_exon;seqid=Merlin +Merlin GeneMark.hmm gene 9014 9241 -274.669850 - . ID=Merlin_13;seqid=Merlin +Merlin GeneMark.hmm mRNA 9014 9241 . - . ID=Merlin_13_mRNA;Parent=Merlin_13;seqid=Merlin +Merlin GeneMark.hmm exon 9014 9241 . - . ID=Merlin_13_exon;Parent=Merlin_13_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 9014 9241 . - 0 ID=Merlin_13_CDS;Parent=Merlin_13_exon;seqid=Merlin +Merlin GeneMark.hmm gene 9248 10747 -1911.373457 - . ID=Merlin_14;seqid=Merlin +Merlin GeneMark.hmm mRNA 9248 10747 . - . ID=Merlin_14_mRNA;Parent=Merlin_14;seqid=Merlin +Merlin GeneMark.hmm exon 9248 10747 . - . ID=Merlin_14_exon;Parent=Merlin_14_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 9248 10747 . - 0 ID=Merlin_14_CDS;Parent=Merlin_14_exon;seqid=Merlin +Merlin GeneMark.hmm gene 10800 11435 -778.108633 + . ID=Merlin_15;seqid=Merlin +Merlin GeneMark.hmm mRNA 10800 11435 . + . ID=Merlin_15_mRNA;Parent=Merlin_15;seqid=Merlin +Merlin GeneMark.hmm exon 10800 11435 . + . ID=Merlin_15_exon;Parent=Merlin_15_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 10800 11435 . + 0 ID=Merlin_15_CDS;Parent=Merlin_15_exon;seqid=Merlin +Merlin GeneMark.hmm gene 11469 12290 -1045.093825 + . ID=Merlin_16;seqid=Merlin +Merlin GeneMark.hmm mRNA 11469 12290 . + . ID=Merlin_16_mRNA;Parent=Merlin_16;seqid=Merlin +Merlin GeneMark.hmm exon 11469 12290 . + . ID=Merlin_16_exon;Parent=Merlin_16_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 11469 12290 . + 0 ID=Merlin_16_CDS;Parent=Merlin_16_exon;seqid=Merlin +Merlin GeneMark.hmm gene 12365 12601 -286.579590 + . ID=Merlin_17;seqid=Merlin +Merlin GeneMark.hmm mRNA 12365 12601 . + . ID=Merlin_17_mRNA;Parent=Merlin_17;seqid=Merlin +Merlin GeneMark.hmm exon 12365 12601 . + . ID=Merlin_17_exon;Parent=Merlin_17_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 12365 12601 . + 0 ID=Merlin_17_CDS;Parent=Merlin_17_exon;seqid=Merlin +Merlin GeneMark.hmm gene 12598 12951 -440.013978 + . ID=Merlin_18;seqid=Merlin +Merlin GeneMark.hmm mRNA 12598 12951 . + . ID=Merlin_18_mRNA;Parent=Merlin_18;seqid=Merlin +Merlin GeneMark.hmm exon 12598 12951 . + . ID=Merlin_18_exon;Parent=Merlin_18_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 12598 12951 . + 0 ID=Merlin_18_CDS;Parent=Merlin_18_exon;seqid=Merlin +Merlin GeneMark.hmm gene 13067 13330 -321.884922 + . ID=Merlin_19;seqid=Merlin +Merlin GeneMark.hmm mRNA 13067 13330 . + . ID=Merlin_19_mRNA;Parent=Merlin_19;seqid=Merlin +Merlin GeneMark.hmm exon 13067 13330 . + . ID=Merlin_19_exon;Parent=Merlin_19_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 13067 13330 . + 0 ID=Merlin_19_CDS;Parent=Merlin_19_exon;seqid=Merlin +Merlin GeneMark.hmm gene 13340 14341 -1253.644245 + . ID=Merlin_20;seqid=Merlin +Merlin GeneMark.hmm mRNA 13340 14341 . + . ID=Merlin_20_mRNA;Parent=Merlin_20;seqid=Merlin +Merlin GeneMark.hmm exon 13340 14341 . + . ID=Merlin_20_exon;Parent=Merlin_20_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 13340 14341 . + 0 ID=Merlin_20_CDS;Parent=Merlin_20_exon;seqid=Merlin +Merlin GeneMark.hmm gene 14320 14883 -740.935174 + . ID=Merlin_21;seqid=Merlin +Merlin GeneMark.hmm mRNA 14320 14883 . + . ID=Merlin_21_mRNA;Parent=Merlin_21;seqid=Merlin +Merlin GeneMark.hmm exon 14320 14883 . + . ID=Merlin_21_exon;Parent=Merlin_21_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 14320 14883 . + 0 ID=Merlin_21_CDS;Parent=Merlin_21_exon;seqid=Merlin +Merlin GeneMark.hmm gene 14911 16197 -1617.100759 - . ID=Merlin_22;seqid=Merlin +Merlin GeneMark.hmm mRNA 14911 16197 . - . ID=Merlin_22_mRNA;Parent=Merlin_22;seqid=Merlin +Merlin GeneMark.hmm exon 14911 16197 . - . ID=Merlin_22_exon;Parent=Merlin_22_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 14911 16197 . - 0 ID=Merlin_22_CDS;Parent=Merlin_22_exon;seqid=Merlin +Merlin GeneMark.hmm gene 16289 17836 -1947.052483 - . ID=Merlin_23;seqid=Merlin +Merlin GeneMark.hmm mRNA 16289 17836 . - . ID=Merlin_23_mRNA;Parent=Merlin_23;seqid=Merlin +Merlin GeneMark.hmm exon 16289 17836 . - . ID=Merlin_23_exon;Parent=Merlin_23_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 16289 17836 . - 0 ID=Merlin_23_CDS;Parent=Merlin_23_exon;seqid=Merlin +Merlin GeneMark.hmm gene 17858 18673 -991.849469 - . ID=Merlin_24;seqid=Merlin +Merlin GeneMark.hmm mRNA 17858 18673 . - . ID=Merlin_24_mRNA;Parent=Merlin_24;seqid=Merlin +Merlin GeneMark.hmm exon 17858 18673 . - . ID=Merlin_24_exon;Parent=Merlin_24_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 17858 18673 . - 0 ID=Merlin_24_CDS;Parent=Merlin_24_exon;seqid=Merlin +Merlin GeneMark.hmm gene 18707 19351 -821.724123 - . ID=Merlin_25;seqid=Merlin +Merlin GeneMark.hmm mRNA 18707 19351 . - . ID=Merlin_25_mRNA;Parent=Merlin_25;seqid=Merlin +Merlin GeneMark.hmm exon 18707 19351 . - . ID=Merlin_25_exon;Parent=Merlin_25_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 18707 19351 . - 0 ID=Merlin_25_CDS;Parent=Merlin_25_exon;seqid=Merlin +Merlin GeneMark.hmm gene 19351 19776 -538.184958 - . ID=Merlin_26;seqid=Merlin +Merlin GeneMark.hmm mRNA 19351 19776 . - . ID=Merlin_26_mRNA;Parent=Merlin_26;seqid=Merlin +Merlin GeneMark.hmm exon 19351 19776 . - . ID=Merlin_26_exon;Parent=Merlin_26_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 19351 19776 . - 0 ID=Merlin_26_CDS;Parent=Merlin_26_exon;seqid=Merlin +Merlin GeneMark.hmm gene 19776 19988 -255.987740 - . ID=Merlin_27;seqid=Merlin +Merlin GeneMark.hmm mRNA 19776 19988 . - . ID=Merlin_27_mRNA;Parent=Merlin_27;seqid=Merlin +Merlin GeneMark.hmm exon 19776 19988 . - . ID=Merlin_27_exon;Parent=Merlin_27_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 19776 19988 . - 0 ID=Merlin_27_CDS;Parent=Merlin_27_exon;seqid=Merlin +Merlin GeneMark.hmm gene 19988 21550 -1974.103338 - . ID=Merlin_28;seqid=Merlin +Merlin GeneMark.hmm mRNA 19988 21550 . - . ID=Merlin_28_mRNA;Parent=Merlin_28;seqid=Merlin +Merlin GeneMark.hmm exon 19988 21550 . - . ID=Merlin_28_exon;Parent=Merlin_28_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 19988 21550 . - 0 ID=Merlin_28_CDS;Parent=Merlin_28_exon;seqid=Merlin +Merlin GeneMark.hmm gene 21625 22116 -616.669463 - . ID=Merlin_29;seqid=Merlin +Merlin GeneMark.hmm mRNA 21625 22116 . - . ID=Merlin_29_mRNA;Parent=Merlin_29;seqid=Merlin +Merlin GeneMark.hmm exon 21625 22116 . - . ID=Merlin_29_exon;Parent=Merlin_29_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 21625 22116 . - 0 ID=Merlin_29_CDS;Parent=Merlin_29_exon;seqid=Merlin +Merlin GeneMark.hmm gene 22240 24216 -2488.948058 - . ID=Merlin_30;seqid=Merlin +Merlin GeneMark.hmm mRNA 22240 24216 . - . ID=Merlin_30_mRNA;Parent=Merlin_30;seqid=Merlin +Merlin GeneMark.hmm exon 22240 24216 . - . ID=Merlin_30_exon;Parent=Merlin_30_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 22240 24216 . - 0 ID=Merlin_30_CDS;Parent=Merlin_30_exon;seqid=Merlin +Merlin GeneMark.hmm gene 24250 26094 -2334.323049 - . ID=Merlin_31;seqid=Merlin +Merlin GeneMark.hmm mRNA 24250 26094 . - . ID=Merlin_31_mRNA;Parent=Merlin_31;seqid=Merlin +Merlin GeneMark.hmm exon 24250 26094 . - . ID=Merlin_31_exon;Parent=Merlin_31_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 24250 26094 . - 0 ID=Merlin_31_CDS;Parent=Merlin_31_exon;seqid=Merlin +Merlin GeneMark.hmm gene 26072 26569 -622.542092 - . ID=Merlin_32;seqid=Merlin +Merlin GeneMark.hmm mRNA 26072 26569 . - . ID=Merlin_32_mRNA;Parent=Merlin_32;seqid=Merlin +Merlin GeneMark.hmm exon 26072 26569 . - . ID=Merlin_32_exon;Parent=Merlin_32_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 26072 26569 . - 0 ID=Merlin_32_CDS;Parent=Merlin_32_exon;seqid=Merlin +Merlin GeneMark.hmm gene 26572 27390 -1062.517306 - . ID=Merlin_33;seqid=Merlin +Merlin GeneMark.hmm mRNA 26572 27390 . - . ID=Merlin_33_mRNA;Parent=Merlin_33;seqid=Merlin +Merlin GeneMark.hmm exon 26572 27390 . - . ID=Merlin_33_exon;Parent=Merlin_33_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 26572 27390 . - 0 ID=Merlin_33_CDS;Parent=Merlin_33_exon;seqid=Merlin +Merlin GeneMark.hmm gene 27434 28204 -971.349898 - . ID=Merlin_34;seqid=Merlin +Merlin GeneMark.hmm mRNA 27434 28204 . - . ID=Merlin_34_mRNA;Parent=Merlin_34;seqid=Merlin +Merlin GeneMark.hmm exon 27434 28204 . - . ID=Merlin_34_exon;Parent=Merlin_34_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 27434 28204 . - 0 ID=Merlin_34_CDS;Parent=Merlin_34_exon;seqid=Merlin +Merlin GeneMark.hmm gene 28201 29130 -1172.195550 - . ID=Merlin_35;seqid=Merlin +Merlin GeneMark.hmm mRNA 28201 29130 . - . ID=Merlin_35_mRNA;Parent=Merlin_35;seqid=Merlin +Merlin GeneMark.hmm exon 28201 29130 . - . ID=Merlin_35_exon;Parent=Merlin_35_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 28201 29130 . - 0 ID=Merlin_35_CDS;Parent=Merlin_35_exon;seqid=Merlin +Merlin GeneMark.hmm gene 29162 30553 -1754.882559 - . ID=Merlin_36;seqid=Merlin +Merlin GeneMark.hmm mRNA 29162 30553 . - . ID=Merlin_36_mRNA;Parent=Merlin_36;seqid=Merlin +Merlin GeneMark.hmm exon 29162 30553 . - . ID=Merlin_36_exon;Parent=Merlin_36_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 29162 30553 . - 0 ID=Merlin_36_CDS;Parent=Merlin_36_exon;seqid=Merlin +Merlin GeneMark.hmm gene 30564 31982 -1840.409176 - . ID=Merlin_37;seqid=Merlin +Merlin GeneMark.hmm mRNA 30564 31982 . - . ID=Merlin_37_mRNA;Parent=Merlin_37;seqid=Merlin +Merlin GeneMark.hmm exon 30564 31982 . - . ID=Merlin_37_exon;Parent=Merlin_37_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 30564 31982 . - 0 ID=Merlin_37_CDS;Parent=Merlin_37_exon;seqid=Merlin +Merlin GeneMark.hmm gene 31982 32632 -810.715921 - . ID=Merlin_38;seqid=Merlin +Merlin GeneMark.hmm mRNA 31982 32632 . - . ID=Merlin_38_mRNA;Parent=Merlin_38;seqid=Merlin +Merlin GeneMark.hmm exon 31982 32632 . - . ID=Merlin_38_exon;Parent=Merlin_38_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 31982 32632 . - 0 ID=Merlin_38_CDS;Parent=Merlin_38_exon;seqid=Merlin +Merlin GeneMark.hmm gene 32632 34437 -2286.512966 - . ID=Merlin_39;seqid=Merlin +Merlin GeneMark.hmm mRNA 32632 34437 . - . ID=Merlin_39_mRNA;Parent=Merlin_39;seqid=Merlin +Merlin GeneMark.hmm exon 32632 34437 . - . ID=Merlin_39_exon;Parent=Merlin_39_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 32632 34437 . - 0 ID=Merlin_39_CDS;Parent=Merlin_39_exon;seqid=Merlin +Merlin GeneMark.hmm gene 34434 35300 -1103.339440 - . ID=Merlin_40;seqid=Merlin +Merlin GeneMark.hmm mRNA 34434 35300 . - . ID=Merlin_40_mRNA;Parent=Merlin_40;seqid=Merlin +Merlin GeneMark.hmm exon 34434 35300 . - . ID=Merlin_40_exon;Parent=Merlin_40_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 34434 35300 . - 0 ID=Merlin_40_CDS;Parent=Merlin_40_exon;seqid=Merlin +Merlin GeneMark.hmm gene 35372 36385 -1286.607331 - . ID=Merlin_41;seqid=Merlin +Merlin GeneMark.hmm mRNA 35372 36385 . - . ID=Merlin_41_mRNA;Parent=Merlin_41;seqid=Merlin +Merlin GeneMark.hmm exon 35372 36385 . - . ID=Merlin_41_exon;Parent=Merlin_41_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 35372 36385 . - 0 ID=Merlin_41_CDS;Parent=Merlin_41_exon;seqid=Merlin +Merlin GeneMark.hmm gene 36378 39479 -3926.862479 - . ID=Merlin_42;seqid=Merlin +Merlin GeneMark.hmm mRNA 36378 39479 . - . ID=Merlin_42_mRNA;Parent=Merlin_42;seqid=Merlin +Merlin GeneMark.hmm exon 36378 39479 . - . ID=Merlin_42_exon;Parent=Merlin_42_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 36378 39479 . - 0 ID=Merlin_42_CDS;Parent=Merlin_42_exon;seqid=Merlin +Merlin GeneMark.hmm gene 39476 41416 -2421.657174 - . ID=Merlin_43;seqid=Merlin +Merlin GeneMark.hmm mRNA 39476 41416 . - . ID=Merlin_43_mRNA;Parent=Merlin_43;seqid=Merlin +Merlin GeneMark.hmm exon 39476 41416 . - . ID=Merlin_43_exon;Parent=Merlin_43_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 39476 41416 . - 0 ID=Merlin_43_CDS;Parent=Merlin_43_exon;seqid=Merlin +Merlin GeneMark.hmm gene 41416 41709 -381.858612 - . ID=Merlin_44;seqid=Merlin +Merlin GeneMark.hmm mRNA 41416 41709 . - . ID=Merlin_44_mRNA;Parent=Merlin_44;seqid=Merlin +Merlin GeneMark.hmm exon 41416 41709 . - . ID=Merlin_44_exon;Parent=Merlin_44_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 41416 41709 . - 0 ID=Merlin_44_CDS;Parent=Merlin_44_exon;seqid=Merlin +Merlin GeneMark.hmm gene 41709 42224 -673.160274 - . ID=Merlin_45;seqid=Merlin +Merlin GeneMark.hmm mRNA 41709 42224 . - . ID=Merlin_45_mRNA;Parent=Merlin_45;seqid=Merlin +Merlin GeneMark.hmm exon 41709 42224 . - . ID=Merlin_45_exon;Parent=Merlin_45_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 41709 42224 . - 0 ID=Merlin_45_CDS;Parent=Merlin_45_exon;seqid=Merlin +Merlin GeneMark.hmm gene 42224 43951 -2203.710381 - . ID=Merlin_46;seqid=Merlin +Merlin GeneMark.hmm mRNA 42224 43951 . - . ID=Merlin_46_mRNA;Parent=Merlin_46;seqid=Merlin +Merlin GeneMark.hmm exon 42224 43951 . - . ID=Merlin_46_exon;Parent=Merlin_46_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 42224 43951 . - 0 ID=Merlin_46_CDS;Parent=Merlin_46_exon;seqid=Merlin +Merlin GeneMark.hmm gene 43951 44526 -730.479121 - . ID=Merlin_47;seqid=Merlin +Merlin GeneMark.hmm mRNA 43951 44526 . - . ID=Merlin_47_mRNA;Parent=Merlin_47;seqid=Merlin +Merlin GeneMark.hmm exon 43951 44526 . - . ID=Merlin_47_exon;Parent=Merlin_47_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 43951 44526 . - 0 ID=Merlin_47_CDS;Parent=Merlin_47_exon;seqid=Merlin +Merlin GeneMark.hmm gene 44576 45025 -562.019925 + . ID=Merlin_48;seqid=Merlin +Merlin GeneMark.hmm mRNA 44576 45025 . + . ID=Merlin_48_mRNA;Parent=Merlin_48;seqid=Merlin +Merlin GeneMark.hmm exon 44576 45025 . + . ID=Merlin_48_exon;Parent=Merlin_48_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 44576 45025 . + 0 ID=Merlin_48_CDS;Parent=Merlin_48_exon;seqid=Merlin +Merlin GeneMark.hmm gene 45025 45855 -1066.702009 + . ID=Merlin_49;seqid=Merlin +Merlin GeneMark.hmm mRNA 45025 45855 . + . ID=Merlin_49_mRNA;Parent=Merlin_49;seqid=Merlin +Merlin GeneMark.hmm exon 45025 45855 . + . ID=Merlin_49_exon;Parent=Merlin_49_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 45025 45855 . + 0 ID=Merlin_49_CDS;Parent=Merlin_49_exon;seqid=Merlin +Merlin GeneMark.hmm gene 45940 46527 -776.360306 + . ID=Merlin_50;seqid=Merlin +Merlin GeneMark.hmm mRNA 45940 46527 . + . ID=Merlin_50_mRNA;Parent=Merlin_50;seqid=Merlin +Merlin GeneMark.hmm exon 45940 46527 . + . ID=Merlin_50_exon;Parent=Merlin_50_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 45940 46527 . + 0 ID=Merlin_50_CDS;Parent=Merlin_50_exon;seqid=Merlin +Merlin GeneMark.hmm gene 46527 47255 -921.088284 + . ID=Merlin_51;seqid=Merlin +Merlin GeneMark.hmm mRNA 46527 47255 . + . ID=Merlin_51_mRNA;Parent=Merlin_51;seqid=Merlin +Merlin GeneMark.hmm exon 46527 47255 . + . ID=Merlin_51_exon;Parent=Merlin_51_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 46527 47255 . + 0 ID=Merlin_51_CDS;Parent=Merlin_51_exon;seqid=Merlin +Merlin GeneMark.hmm gene 47252 47485 -286.785634 + . ID=Merlin_52;seqid=Merlin +Merlin GeneMark.hmm mRNA 47252 47485 . + . ID=Merlin_52_mRNA;Parent=Merlin_52;seqid=Merlin +Merlin GeneMark.hmm exon 47252 47485 . + . ID=Merlin_52_exon;Parent=Merlin_52_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 47252 47485 . + 0 ID=Merlin_52_CDS;Parent=Merlin_52_exon;seqid=Merlin +Merlin GeneMark.hmm gene 47485 47940 -595.997014 + . ID=Merlin_53;seqid=Merlin +Merlin GeneMark.hmm mRNA 47485 47940 . + . ID=Merlin_53_mRNA;Parent=Merlin_53;seqid=Merlin +Merlin GeneMark.hmm exon 47485 47940 . + . ID=Merlin_53_exon;Parent=Merlin_53_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 47485 47940 . + 0 ID=Merlin_53_CDS;Parent=Merlin_53_exon;seqid=Merlin +Merlin GeneMark.hmm gene 47937 48143 -259.350499 + . ID=Merlin_54;seqid=Merlin +Merlin GeneMark.hmm mRNA 47937 48143 . + . ID=Merlin_54_mRNA;Parent=Merlin_54;seqid=Merlin +Merlin GeneMark.hmm exon 47937 48143 . + . ID=Merlin_54_exon;Parent=Merlin_54_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 47937 48143 . + 0 ID=Merlin_54_CDS;Parent=Merlin_54_exon;seqid=Merlin +Merlin GeneMark.hmm gene 48140 48358 -277.240023 + . ID=Merlin_55;seqid=Merlin +Merlin GeneMark.hmm mRNA 48140 48358 . + . ID=Merlin_55_mRNA;Parent=Merlin_55;seqid=Merlin +Merlin GeneMark.hmm exon 48140 48358 . + . ID=Merlin_55_exon;Parent=Merlin_55_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 48140 48358 . + 0 ID=Merlin_55_CDS;Parent=Merlin_55_exon;seqid=Merlin +Merlin GeneMark.hmm gene 48418 48600 -230.583168 + . ID=Merlin_56;seqid=Merlin +Merlin GeneMark.hmm mRNA 48418 48600 . + . ID=Merlin_56_mRNA;Parent=Merlin_56;seqid=Merlin +Merlin GeneMark.hmm exon 48418 48600 . + . ID=Merlin_56_exon;Parent=Merlin_56_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 48418 48600 . + 0 ID=Merlin_56_CDS;Parent=Merlin_56_exon;seqid=Merlin +Merlin GeneMark.hmm gene 48584 48769 -232.687067 + . ID=Merlin_57;seqid=Merlin +Merlin GeneMark.hmm mRNA 48584 48769 . + . ID=Merlin_57_mRNA;Parent=Merlin_57;seqid=Merlin +Merlin GeneMark.hmm exon 48584 48769 . + . ID=Merlin_57_exon;Parent=Merlin_57_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 48584 48769 . + 0 ID=Merlin_57_CDS;Parent=Merlin_57_exon;seqid=Merlin +Merlin GeneMark.hmm gene 48826 49053 -288.143395 + . ID=Merlin_58;seqid=Merlin +Merlin GeneMark.hmm mRNA 48826 49053 . + . ID=Merlin_58_mRNA;Parent=Merlin_58;seqid=Merlin +Merlin GeneMark.hmm exon 48826 49053 . + . ID=Merlin_58_exon;Parent=Merlin_58_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 48826 49053 . + 0 ID=Merlin_58_CDS;Parent=Merlin_58_exon;seqid=Merlin +Merlin GeneMark.hmm gene 49076 49432 -449.304895 + . ID=Merlin_59;seqid=Merlin +Merlin GeneMark.hmm mRNA 49076 49432 . + . ID=Merlin_59_mRNA;Parent=Merlin_59;seqid=Merlin +Merlin GeneMark.hmm exon 49076 49432 . + . ID=Merlin_59_exon;Parent=Merlin_59_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 49076 49432 . + 0 ID=Merlin_59_CDS;Parent=Merlin_59_exon;seqid=Merlin +Merlin GeneMark.hmm gene 49844 50110 -322.091381 + . ID=Merlin_60;seqid=Merlin +Merlin GeneMark.hmm mRNA 49844 50110 . + . ID=Merlin_60_mRNA;Parent=Merlin_60;seqid=Merlin +Merlin GeneMark.hmm exon 49844 50110 . + . ID=Merlin_60_exon;Parent=Merlin_60_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 49844 50110 . + 0 ID=Merlin_60_CDS;Parent=Merlin_60_exon;seqid=Merlin +Merlin GeneMark.hmm gene 50983 51234 -301.882768 + . ID=Merlin_61;seqid=Merlin +Merlin GeneMark.hmm mRNA 50983 51234 . + . ID=Merlin_61_mRNA;Parent=Merlin_61;seqid=Merlin +Merlin GeneMark.hmm exon 50983 51234 . + . ID=Merlin_61_exon;Parent=Merlin_61_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 50983 51234 . + 0 ID=Merlin_61_CDS;Parent=Merlin_61_exon;seqid=Merlin +Merlin GeneMark.hmm gene 51596 51838 -304.801536 + . ID=Merlin_62;seqid=Merlin +Merlin GeneMark.hmm mRNA 51596 51838 . + . ID=Merlin_62_mRNA;Parent=Merlin_62;seqid=Merlin +Merlin GeneMark.hmm exon 51596 51838 . + . ID=Merlin_62_exon;Parent=Merlin_62_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 51596 51838 . + 0 ID=Merlin_62_CDS;Parent=Merlin_62_exon;seqid=Merlin +Merlin GeneMark.hmm gene 51835 52182 -434.777109 + . ID=Merlin_63;seqid=Merlin +Merlin GeneMark.hmm mRNA 51835 52182 . + . ID=Merlin_63_mRNA;Parent=Merlin_63;seqid=Merlin +Merlin GeneMark.hmm exon 51835 52182 . + . ID=Merlin_63_exon;Parent=Merlin_63_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 51835 52182 . + 0 ID=Merlin_63_CDS;Parent=Merlin_63_exon;seqid=Merlin +Merlin GeneMark.hmm gene 52175 52684 -629.023983 + . ID=Merlin_64;seqid=Merlin +Merlin GeneMark.hmm mRNA 52175 52684 . + . ID=Merlin_64_mRNA;Parent=Merlin_64;seqid=Merlin +Merlin GeneMark.hmm exon 52175 52684 . + . ID=Merlin_64_exon;Parent=Merlin_64_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 52175 52684 . + 0 ID=Merlin_64_CDS;Parent=Merlin_64_exon;seqid=Merlin +Merlin GeneMark.hmm gene 52681 52827 -183.076828 + . ID=Merlin_65;seqid=Merlin +Merlin GeneMark.hmm mRNA 52681 52827 . + . ID=Merlin_65_mRNA;Parent=Merlin_65;seqid=Merlin +Merlin GeneMark.hmm exon 52681 52827 . + . ID=Merlin_65_exon;Parent=Merlin_65_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 52681 52827 . + 0 ID=Merlin_65_CDS;Parent=Merlin_65_exon;seqid=Merlin +Merlin GeneMark.hmm gene 52806 53030 -287.687980 + . ID=Merlin_66;seqid=Merlin +Merlin GeneMark.hmm mRNA 52806 53030 . + . ID=Merlin_66_mRNA;Parent=Merlin_66;seqid=Merlin +Merlin GeneMark.hmm exon 52806 53030 . + . ID=Merlin_66_exon;Parent=Merlin_66_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 52806 53030 . + 0 ID=Merlin_66_CDS;Parent=Merlin_66_exon;seqid=Merlin +Merlin GeneMark.hmm gene 53032 53475 -570.370348 + . ID=Merlin_67;seqid=Merlin +Merlin GeneMark.hmm mRNA 53032 53475 . + . ID=Merlin_67_mRNA;Parent=Merlin_67;seqid=Merlin +Merlin GeneMark.hmm exon 53032 53475 . + . ID=Merlin_67_exon;Parent=Merlin_67_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 53032 53475 . + 0 ID=Merlin_67_CDS;Parent=Merlin_67_exon;seqid=Merlin +Merlin GeneMark.hmm gene 53647 54225 -757.038069 + . ID=Merlin_68;seqid=Merlin +Merlin GeneMark.hmm mRNA 53647 54225 . + . ID=Merlin_68_mRNA;Parent=Merlin_68;seqid=Merlin +Merlin GeneMark.hmm exon 53647 54225 . + . ID=Merlin_68_exon;Parent=Merlin_68_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 53647 54225 . + 0 ID=Merlin_68_CDS;Parent=Merlin_68_exon;seqid=Merlin +Merlin GeneMark.hmm gene 54316 54516 -236.842212 + . ID=Merlin_69;seqid=Merlin +Merlin GeneMark.hmm mRNA 54316 54516 . + . ID=Merlin_69_mRNA;Parent=Merlin_69;seqid=Merlin +Merlin GeneMark.hmm exon 54316 54516 . + . ID=Merlin_69_exon;Parent=Merlin_69_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 54316 54516 . + 0 ID=Merlin_69_CDS;Parent=Merlin_69_exon;seqid=Merlin +Merlin GeneMark.hmm gene 54569 55168 -748.986136 + . ID=Merlin_70;seqid=Merlin +Merlin GeneMark.hmm mRNA 54569 55168 . + . ID=Merlin_70_mRNA;Parent=Merlin_70;seqid=Merlin +Merlin GeneMark.hmm exon 54569 55168 . + . ID=Merlin_70_exon;Parent=Merlin_70_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 54569 55168 . + 0 ID=Merlin_70_CDS;Parent=Merlin_70_exon;seqid=Merlin +Merlin GeneMark.hmm gene 55216 55860 -813.197162 + . ID=Merlin_71;seqid=Merlin +Merlin GeneMark.hmm mRNA 55216 55860 . + . ID=Merlin_71_mRNA;Parent=Merlin_71;seqid=Merlin +Merlin GeneMark.hmm exon 55216 55860 . + . ID=Merlin_71_exon;Parent=Merlin_71_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 55216 55860 . + 0 ID=Merlin_71_CDS;Parent=Merlin_71_exon;seqid=Merlin +Merlin GeneMark.hmm gene 55857 56279 -536.845669 + . ID=Merlin_72;seqid=Merlin +Merlin GeneMark.hmm mRNA 55857 56279 . + . ID=Merlin_72_mRNA;Parent=Merlin_72;seqid=Merlin +Merlin GeneMark.hmm exon 55857 56279 . + . ID=Merlin_72_exon;Parent=Merlin_72_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 55857 56279 . + 0 ID=Merlin_72_CDS;Parent=Merlin_72_exon;seqid=Merlin +Merlin GeneMark.hmm gene 56276 56644 -463.468418 + . ID=Merlin_73;seqid=Merlin +Merlin GeneMark.hmm mRNA 56276 56644 . + . ID=Merlin_73_mRNA;Parent=Merlin_73;seqid=Merlin +Merlin GeneMark.hmm exon 56276 56644 . + . ID=Merlin_73_exon;Parent=Merlin_73_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 56276 56644 . + 0 ID=Merlin_73_CDS;Parent=Merlin_73_exon;seqid=Merlin +Merlin GeneMark.hmm gene 56634 56894 -313.595651 + . ID=Merlin_74;seqid=Merlin +Merlin GeneMark.hmm mRNA 56634 56894 . + . ID=Merlin_74_mRNA;Parent=Merlin_74;seqid=Merlin +Merlin GeneMark.hmm exon 56634 56894 . + . ID=Merlin_74_exon;Parent=Merlin_74_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 56634 56894 . + 0 ID=Merlin_74_CDS;Parent=Merlin_74_exon;seqid=Merlin +Merlin GeneMark.hmm gene 56894 57172 -343.261028 + . ID=Merlin_75;seqid=Merlin +Merlin GeneMark.hmm mRNA 56894 57172 . + . ID=Merlin_75_mRNA;Parent=Merlin_75;seqid=Merlin +Merlin GeneMark.hmm exon 56894 57172 . + . ID=Merlin_75_exon;Parent=Merlin_75_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 56894 57172 . + 0 ID=Merlin_75_CDS;Parent=Merlin_75_exon;seqid=Merlin +Merlin GeneMark.hmm gene 57182 57403 -269.950515 + . ID=Merlin_76;seqid=Merlin +Merlin GeneMark.hmm mRNA 57182 57403 . + . ID=Merlin_76_mRNA;Parent=Merlin_76;seqid=Merlin +Merlin GeneMark.hmm exon 57182 57403 . + . ID=Merlin_76_exon;Parent=Merlin_76_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 57182 57403 . + 0 ID=Merlin_76_CDS;Parent=Merlin_76_exon;seqid=Merlin +Merlin GeneMark.hmm gene 57499 57786 -373.177871 + . ID=Merlin_77;seqid=Merlin +Merlin GeneMark.hmm mRNA 57499 57786 . + . ID=Merlin_77_mRNA;Parent=Merlin_77;seqid=Merlin +Merlin GeneMark.hmm exon 57499 57786 . + . ID=Merlin_77_exon;Parent=Merlin_77_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 57499 57786 . + 0 ID=Merlin_77_CDS;Parent=Merlin_77_exon;seqid=Merlin +Merlin GeneMark.hmm gene 57777 58724 -1215.940307 + . ID=Merlin_78;seqid=Merlin +Merlin GeneMark.hmm mRNA 57777 58724 . + . ID=Merlin_78_mRNA;Parent=Merlin_78;seqid=Merlin +Merlin GeneMark.hmm exon 57777 58724 . + . ID=Merlin_78_exon;Parent=Merlin_78_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 57777 58724 . + 0 ID=Merlin_78_CDS;Parent=Merlin_78_exon;seqid=Merlin +Merlin GeneMark.hmm gene 58717 58857 -173.930421 + . ID=Merlin_79;seqid=Merlin +Merlin GeneMark.hmm mRNA 58717 58857 . + . ID=Merlin_79_mRNA;Parent=Merlin_79;seqid=Merlin +Merlin GeneMark.hmm exon 58717 58857 . + . ID=Merlin_79_exon;Parent=Merlin_79_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 58717 58857 . + 0 ID=Merlin_79_CDS;Parent=Merlin_79_exon;seqid=Merlin +Merlin GeneMark.hmm gene 58872 59561 -880.645375 + . ID=Merlin_80;seqid=Merlin +Merlin GeneMark.hmm mRNA 58872 59561 . + . ID=Merlin_80_mRNA;Parent=Merlin_80;seqid=Merlin +Merlin GeneMark.hmm exon 58872 59561 . + . ID=Merlin_80_exon;Parent=Merlin_80_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 58872 59561 . + 0 ID=Merlin_80_CDS;Parent=Merlin_80_exon;seqid=Merlin +Merlin GeneMark.hmm gene 59561 59899 -428.109831 + . ID=Merlin_81;seqid=Merlin +Merlin GeneMark.hmm mRNA 59561 59899 . + . ID=Merlin_81_mRNA;Parent=Merlin_81;seqid=Merlin +Merlin GeneMark.hmm exon 59561 59899 . + . ID=Merlin_81_exon;Parent=Merlin_81_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 59561 59899 . + 0 ID=Merlin_81_CDS;Parent=Merlin_81_exon;seqid=Merlin +Merlin GeneMark.hmm gene 59896 60144 -306.923987 + . ID=Merlin_82;seqid=Merlin +Merlin GeneMark.hmm mRNA 59896 60144 . + . ID=Merlin_82_mRNA;Parent=Merlin_82;seqid=Merlin +Merlin GeneMark.hmm exon 59896 60144 . + . ID=Merlin_82_exon;Parent=Merlin_82_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 59896 60144 . + 0 ID=Merlin_82_CDS;Parent=Merlin_82_exon;seqid=Merlin +Merlin GeneMark.hmm gene 60144 60386 -304.982653 + . ID=Merlin_83;seqid=Merlin +Merlin GeneMark.hmm mRNA 60144 60386 . + . ID=Merlin_83_mRNA;Parent=Merlin_83;seqid=Merlin +Merlin GeneMark.hmm exon 60144 60386 . + . ID=Merlin_83_exon;Parent=Merlin_83_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 60144 60386 . + 0 ID=Merlin_83_CDS;Parent=Merlin_83_exon;seqid=Merlin +Merlin GeneMark.hmm gene 60379 60840 -594.547870 + . ID=Merlin_84;seqid=Merlin +Merlin GeneMark.hmm mRNA 60379 60840 . + . ID=Merlin_84_mRNA;Parent=Merlin_84;seqid=Merlin +Merlin GeneMark.hmm exon 60379 60840 . + . ID=Merlin_84_exon;Parent=Merlin_84_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 60379 60840 . + 0 ID=Merlin_84_CDS;Parent=Merlin_84_exon;seqid=Merlin +Merlin GeneMark.hmm gene 60869 61369 -617.611500 + . ID=Merlin_85;seqid=Merlin +Merlin GeneMark.hmm mRNA 60869 61369 . + . ID=Merlin_85_mRNA;Parent=Merlin_85;seqid=Merlin +Merlin GeneMark.hmm exon 60869 61369 . + . ID=Merlin_85_exon;Parent=Merlin_85_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 60869 61369 . + 0 ID=Merlin_85_CDS;Parent=Merlin_85_exon;seqid=Merlin +Merlin GeneMark.hmm gene 61356 61703 -422.353181 + . ID=Merlin_86;seqid=Merlin +Merlin GeneMark.hmm mRNA 61356 61703 . + . ID=Merlin_86_mRNA;Parent=Merlin_86;seqid=Merlin +Merlin GeneMark.hmm exon 61356 61703 . + . ID=Merlin_86_exon;Parent=Merlin_86_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 61356 61703 . + 0 ID=Merlin_86_CDS;Parent=Merlin_86_exon;seqid=Merlin +Merlin GeneMark.hmm gene 61760 62167 -519.180141 + . ID=Merlin_87;seqid=Merlin +Merlin GeneMark.hmm mRNA 61760 62167 . + . ID=Merlin_87_mRNA;Parent=Merlin_87;seqid=Merlin +Merlin GeneMark.hmm exon 61760 62167 . + . ID=Merlin_87_exon;Parent=Merlin_87_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 61760 62167 . + 0 ID=Merlin_87_CDS;Parent=Merlin_87_exon;seqid=Merlin +Merlin GeneMark.hmm gene 62359 62889 -691.422401 + . ID=Merlin_88;seqid=Merlin +Merlin GeneMark.hmm mRNA 62359 62889 . + . ID=Merlin_88_mRNA;Parent=Merlin_88;seqid=Merlin +Merlin GeneMark.hmm exon 62359 62889 . + . ID=Merlin_88_exon;Parent=Merlin_88_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 62359 62889 . + 0 ID=Merlin_88_CDS;Parent=Merlin_88_exon;seqid=Merlin +Merlin GeneMark.hmm gene 62886 63131 -315.050979 + . ID=Merlin_89;seqid=Merlin +Merlin GeneMark.hmm mRNA 62886 63131 . + . ID=Merlin_89_mRNA;Parent=Merlin_89;seqid=Merlin +Merlin GeneMark.hmm exon 62886 63131 . + . ID=Merlin_89_exon;Parent=Merlin_89_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 62886 63131 . + 0 ID=Merlin_89_CDS;Parent=Merlin_89_exon;seqid=Merlin +Merlin GeneMark.hmm gene 63124 63435 -400.565460 + . ID=Merlin_90;seqid=Merlin +Merlin GeneMark.hmm mRNA 63124 63435 . + . ID=Merlin_90_mRNA;Parent=Merlin_90;seqid=Merlin +Merlin GeneMark.hmm exon 63124 63435 . + . ID=Merlin_90_exon;Parent=Merlin_90_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 63124 63435 . + 0 ID=Merlin_90_CDS;Parent=Merlin_90_exon;seqid=Merlin +Merlin GeneMark.hmm gene 63432 63710 -335.031911 + . ID=Merlin_91;seqid=Merlin +Merlin GeneMark.hmm mRNA 63432 63710 . + . ID=Merlin_91_mRNA;Parent=Merlin_91;seqid=Merlin +Merlin GeneMark.hmm exon 63432 63710 . + . ID=Merlin_91_exon;Parent=Merlin_91_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 63432 63710 . + 0 ID=Merlin_91_CDS;Parent=Merlin_91_exon;seqid=Merlin +Merlin GeneMark.hmm gene 63710 63883 -203.175066 + . ID=Merlin_92;seqid=Merlin +Merlin GeneMark.hmm mRNA 63710 63883 . + . ID=Merlin_92_mRNA;Parent=Merlin_92;seqid=Merlin +Merlin GeneMark.hmm exon 63710 63883 . + . ID=Merlin_92_exon;Parent=Merlin_92_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 63710 63883 . + 0 ID=Merlin_92_CDS;Parent=Merlin_92_exon;seqid=Merlin +Merlin GeneMark.hmm gene 63942 64406 -597.655245 + . ID=Merlin_93;seqid=Merlin +Merlin GeneMark.hmm mRNA 63942 64406 . + . ID=Merlin_93_mRNA;Parent=Merlin_93;seqid=Merlin +Merlin GeneMark.hmm exon 63942 64406 . + . ID=Merlin_93_exon;Parent=Merlin_93_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 63942 64406 . + 0 ID=Merlin_93_CDS;Parent=Merlin_93_exon;seqid=Merlin +Merlin GeneMark.hmm gene 64414 64962 -713.810677 + . ID=Merlin_94;seqid=Merlin +Merlin GeneMark.hmm mRNA 64414 64962 . + . ID=Merlin_94_mRNA;Parent=Merlin_94;seqid=Merlin +Merlin GeneMark.hmm exon 64414 64962 . + . ID=Merlin_94_exon;Parent=Merlin_94_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 64414 64962 . + 0 ID=Merlin_94_CDS;Parent=Merlin_94_exon;seqid=Merlin +Merlin GeneMark.hmm gene 64962 65282 -412.685055 + . ID=Merlin_95;seqid=Merlin +Merlin GeneMark.hmm mRNA 64962 65282 . + . ID=Merlin_95_mRNA;Parent=Merlin_95;seqid=Merlin +Merlin GeneMark.hmm exon 64962 65282 . + . ID=Merlin_95_exon;Parent=Merlin_95_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 64962 65282 . + 0 ID=Merlin_95_CDS;Parent=Merlin_95_exon;seqid=Merlin +Merlin GeneMark.hmm gene 65303 65683 -496.639498 + . ID=Merlin_96;seqid=Merlin +Merlin GeneMark.hmm mRNA 65303 65683 . + . ID=Merlin_96_mRNA;Parent=Merlin_96;seqid=Merlin +Merlin GeneMark.hmm exon 65303 65683 . + . ID=Merlin_96_exon;Parent=Merlin_96_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 65303 65683 . + 0 ID=Merlin_96_CDS;Parent=Merlin_96_exon;seqid=Merlin +Merlin GeneMark.hmm gene 65676 66128 -573.822848 + . ID=Merlin_97;seqid=Merlin +Merlin GeneMark.hmm mRNA 65676 66128 . + . ID=Merlin_97_mRNA;Parent=Merlin_97;seqid=Merlin +Merlin GeneMark.hmm exon 65676 66128 . + . ID=Merlin_97_exon;Parent=Merlin_97_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 65676 66128 . + 0 ID=Merlin_97_CDS;Parent=Merlin_97_exon;seqid=Merlin +Merlin GeneMark.hmm gene 66128 66337 -267.423513 + . ID=Merlin_98;seqid=Merlin +Merlin GeneMark.hmm mRNA 66128 66337 . + . ID=Merlin_98_mRNA;Parent=Merlin_98;seqid=Merlin +Merlin GeneMark.hmm exon 66128 66337 . + . ID=Merlin_98_exon;Parent=Merlin_98_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 66128 66337 . + 0 ID=Merlin_98_CDS;Parent=Merlin_98_exon;seqid=Merlin +Merlin GeneMark.hmm gene 66328 66507 -214.194539 + . ID=Merlin_99;seqid=Merlin +Merlin GeneMark.hmm mRNA 66328 66507 . + . ID=Merlin_99_mRNA;Parent=Merlin_99;seqid=Merlin +Merlin GeneMark.hmm exon 66328 66507 . + . ID=Merlin_99_exon;Parent=Merlin_99_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 66328 66507 . + 0 ID=Merlin_99_CDS;Parent=Merlin_99_exon;seqid=Merlin +Merlin GeneMark.hmm gene 66504 66683 -217.450578 + . ID=Merlin_100;seqid=Merlin +Merlin GeneMark.hmm mRNA 66504 66683 . + . ID=Merlin_100_mRNA;Parent=Merlin_100;seqid=Merlin +Merlin GeneMark.hmm exon 66504 66683 . + . ID=Merlin_100_exon;Parent=Merlin_100_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 66504 66683 . + 0 ID=Merlin_100_CDS;Parent=Merlin_100_exon;seqid=Merlin +Merlin GeneMark.hmm gene 66680 66871 -235.908196 + . ID=Merlin_101;seqid=Merlin +Merlin GeneMark.hmm mRNA 66680 66871 . + . ID=Merlin_101_mRNA;Parent=Merlin_101;seqid=Merlin +Merlin GeneMark.hmm exon 66680 66871 . + . ID=Merlin_101_exon;Parent=Merlin_101_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 66680 66871 . + 0 ID=Merlin_101_CDS;Parent=Merlin_101_exon;seqid=Merlin +Merlin GeneMark.hmm gene 66873 67058 -233.275820 + . ID=Merlin_102;seqid=Merlin +Merlin GeneMark.hmm mRNA 66873 67058 . + . ID=Merlin_102_mRNA;Parent=Merlin_102;seqid=Merlin +Merlin GeneMark.hmm exon 66873 67058 . + . ID=Merlin_102_exon;Parent=Merlin_102_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 66873 67058 . + 0 ID=Merlin_102_CDS;Parent=Merlin_102_exon;seqid=Merlin +Merlin GeneMark.hmm gene 67058 67267 -264.096823 + . ID=Merlin_103;seqid=Merlin +Merlin GeneMark.hmm mRNA 67058 67267 . + . ID=Merlin_103_mRNA;Parent=Merlin_103;seqid=Merlin +Merlin GeneMark.hmm exon 67058 67267 . + . ID=Merlin_103_exon;Parent=Merlin_103_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 67058 67267 . + 0 ID=Merlin_103_CDS;Parent=Merlin_103_exon;seqid=Merlin +Merlin GeneMark.hmm gene 67267 67845 -752.300357 + . ID=Merlin_104;seqid=Merlin +Merlin GeneMark.hmm mRNA 67267 67845 . + . ID=Merlin_104_mRNA;Parent=Merlin_104;seqid=Merlin +Merlin GeneMark.hmm exon 67267 67845 . + . ID=Merlin_104_exon;Parent=Merlin_104_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 67267 67845 . + 0 ID=Merlin_104_CDS;Parent=Merlin_104_exon;seqid=Merlin +Merlin GeneMark.hmm gene 67970 68128 -196.227328 + . ID=Merlin_105;seqid=Merlin +Merlin GeneMark.hmm mRNA 67970 68128 . + . ID=Merlin_105_mRNA;Parent=Merlin_105;seqid=Merlin +Merlin GeneMark.hmm exon 67970 68128 . + . ID=Merlin_105_exon;Parent=Merlin_105_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 67970 68128 . + 0 ID=Merlin_105_CDS;Parent=Merlin_105_exon;seqid=Merlin +Merlin GeneMark.hmm gene 68125 68280 -186.665512 + . ID=Merlin_106;seqid=Merlin +Merlin GeneMark.hmm mRNA 68125 68280 . + . ID=Merlin_106_mRNA;Parent=Merlin_106;seqid=Merlin +Merlin GeneMark.hmm exon 68125 68280 . + . ID=Merlin_106_exon;Parent=Merlin_106_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 68125 68280 . + 0 ID=Merlin_106_CDS;Parent=Merlin_106_exon;seqid=Merlin +Merlin GeneMark.hmm gene 68345 68728 -480.408576 + . ID=Merlin_107;seqid=Merlin +Merlin GeneMark.hmm mRNA 68345 68728 . + . ID=Merlin_107_mRNA;Parent=Merlin_107;seqid=Merlin +Merlin GeneMark.hmm exon 68345 68728 . + . ID=Merlin_107_exon;Parent=Merlin_107_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 68345 68728 . + 0 ID=Merlin_107_CDS;Parent=Merlin_107_exon;seqid=Merlin +Merlin GeneMark.hmm gene 68787 68999 -267.936260 + . ID=Merlin_108;seqid=Merlin +Merlin GeneMark.hmm mRNA 68787 68999 . + . ID=Merlin_108_mRNA;Parent=Merlin_108;seqid=Merlin +Merlin GeneMark.hmm exon 68787 68999 . + . ID=Merlin_108_exon;Parent=Merlin_108_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 68787 68999 . + 0 ID=Merlin_108_CDS;Parent=Merlin_108_exon;seqid=Merlin +Merlin GeneMark.hmm gene 69008 69295 -369.655354 + . ID=Merlin_109;seqid=Merlin +Merlin GeneMark.hmm mRNA 69008 69295 . + . ID=Merlin_109_mRNA;Parent=Merlin_109;seqid=Merlin +Merlin GeneMark.hmm exon 69008 69295 . + . ID=Merlin_109_exon;Parent=Merlin_109_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 69008 69295 . + 0 ID=Merlin_109_CDS;Parent=Merlin_109_exon;seqid=Merlin +Merlin GeneMark.hmm gene 69285 69668 -486.207714 + . ID=Merlin_110;seqid=Merlin +Merlin GeneMark.hmm mRNA 69285 69668 . + . ID=Merlin_110_mRNA;Parent=Merlin_110;seqid=Merlin +Merlin GeneMark.hmm exon 69285 69668 . + . ID=Merlin_110_exon;Parent=Merlin_110_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 69285 69668 . + 0 ID=Merlin_110_CDS;Parent=Merlin_110_exon;seqid=Merlin +Merlin GeneMark.hmm gene 69767 69862 -119.090489 + . ID=Merlin_111;seqid=Merlin +Merlin GeneMark.hmm mRNA 69767 69862 . + . ID=Merlin_111_mRNA;Parent=Merlin_111;seqid=Merlin +Merlin GeneMark.hmm exon 69767 69862 . + . ID=Merlin_111_exon;Parent=Merlin_111_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 69767 69862 . + 0 ID=Merlin_111_CDS;Parent=Merlin_111_exon;seqid=Merlin +Merlin GeneMark.hmm gene 69859 70023 -200.738602 + . ID=Merlin_112;seqid=Merlin +Merlin GeneMark.hmm mRNA 69859 70023 . + . ID=Merlin_112_mRNA;Parent=Merlin_112;seqid=Merlin +Merlin GeneMark.hmm exon 69859 70023 . + . ID=Merlin_112_exon;Parent=Merlin_112_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 69859 70023 . + 0 ID=Merlin_112_CDS;Parent=Merlin_112_exon;seqid=Merlin +Merlin GeneMark.hmm gene 70030 70263 -281.446786 + . ID=Merlin_113;seqid=Merlin +Merlin GeneMark.hmm mRNA 70030 70263 . + . ID=Merlin_113_mRNA;Parent=Merlin_113;seqid=Merlin +Merlin GeneMark.hmm exon 70030 70263 . + . ID=Merlin_113_exon;Parent=Merlin_113_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 70030 70263 . + 0 ID=Merlin_113_CDS;Parent=Merlin_113_exon;seqid=Merlin +Merlin GeneMark.hmm gene 70263 70520 -332.653168 + . ID=Merlin_114;seqid=Merlin +Merlin GeneMark.hmm mRNA 70263 70520 . + . ID=Merlin_114_mRNA;Parent=Merlin_114;seqid=Merlin +Merlin GeneMark.hmm exon 70263 70520 . + . ID=Merlin_114_exon;Parent=Merlin_114_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 70263 70520 . + 0 ID=Merlin_114_CDS;Parent=Merlin_114_exon;seqid=Merlin +Merlin GeneMark.hmm gene 70517 70780 -336.190173 + . ID=Merlin_115;seqid=Merlin +Merlin GeneMark.hmm mRNA 70517 70780 . + . ID=Merlin_115_mRNA;Parent=Merlin_115;seqid=Merlin +Merlin GeneMark.hmm exon 70517 70780 . + . ID=Merlin_115_exon;Parent=Merlin_115_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 70517 70780 . + 0 ID=Merlin_115_CDS;Parent=Merlin_115_exon;seqid=Merlin +Merlin GeneMark.hmm gene 70866 71102 -289.943350 + . ID=Merlin_116;seqid=Merlin +Merlin GeneMark.hmm mRNA 70866 71102 . + . ID=Merlin_116_mRNA;Parent=Merlin_116;seqid=Merlin +Merlin GeneMark.hmm exon 70866 71102 . + . ID=Merlin_116_exon;Parent=Merlin_116_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 70866 71102 . + 0 ID=Merlin_116_CDS;Parent=Merlin_116_exon;seqid=Merlin +Merlin GeneMark.hmm gene 71092 71571 -594.658724 + . ID=Merlin_117;seqid=Merlin +Merlin GeneMark.hmm mRNA 71092 71571 . + . ID=Merlin_117_mRNA;Parent=Merlin_117;seqid=Merlin +Merlin GeneMark.hmm exon 71092 71571 . + . ID=Merlin_117_exon;Parent=Merlin_117_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 71092 71571 . + 0 ID=Merlin_117_CDS;Parent=Merlin_117_exon;seqid=Merlin +Merlin GeneMark.hmm gene 71574 72116 -686.096724 + . ID=Merlin_118;seqid=Merlin +Merlin GeneMark.hmm mRNA 71574 72116 . + . ID=Merlin_118_mRNA;Parent=Merlin_118;seqid=Merlin +Merlin GeneMark.hmm exon 71574 72116 . + . ID=Merlin_118_exon;Parent=Merlin_118_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 71574 72116 . + 0 ID=Merlin_118_CDS;Parent=Merlin_118_exon;seqid=Merlin +Merlin GeneMark.hmm gene 72116 73126 -1269.074513 + . ID=Merlin_119;seqid=Merlin +Merlin GeneMark.hmm mRNA 72116 73126 . + . ID=Merlin_119_mRNA;Parent=Merlin_119;seqid=Merlin +Merlin GeneMark.hmm exon 72116 73126 . + . ID=Merlin_119_exon;Parent=Merlin_119_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 72116 73126 . + 0 ID=Merlin_119_CDS;Parent=Merlin_119_exon;seqid=Merlin +Merlin GeneMark.hmm gene 73123 73359 -314.305354 + . ID=Merlin_120;seqid=Merlin +Merlin GeneMark.hmm mRNA 73123 73359 . + . ID=Merlin_120_mRNA;Parent=Merlin_120;seqid=Merlin +Merlin GeneMark.hmm exon 73123 73359 . + . ID=Merlin_120_exon;Parent=Merlin_120_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 73123 73359 . + 0 ID=Merlin_120_CDS;Parent=Merlin_120_exon;seqid=Merlin +Merlin GeneMark.hmm gene 73461 73631 -201.815396 + . ID=Merlin_121;seqid=Merlin +Merlin GeneMark.hmm mRNA 73461 73631 . + . ID=Merlin_121_mRNA;Parent=Merlin_121;seqid=Merlin +Merlin GeneMark.hmm exon 73461 73631 . + . ID=Merlin_121_exon;Parent=Merlin_121_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 73461 73631 . + 0 ID=Merlin_121_CDS;Parent=Merlin_121_exon;seqid=Merlin +Merlin GeneMark.hmm gene 73721 74698 -1210.601194 + . ID=Merlin_122;seqid=Merlin +Merlin GeneMark.hmm mRNA 73721 74698 . + . ID=Merlin_122_mRNA;Parent=Merlin_122;seqid=Merlin +Merlin GeneMark.hmm exon 73721 74698 . + . ID=Merlin_122_exon;Parent=Merlin_122_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 73721 74698 . + 0 ID=Merlin_122_CDS;Parent=Merlin_122_exon;seqid=Merlin +Merlin GeneMark.hmm gene 74744 74893 -185.633773 + . ID=Merlin_123;seqid=Merlin +Merlin GeneMark.hmm mRNA 74744 74893 . + . ID=Merlin_123_mRNA;Parent=Merlin_123;seqid=Merlin +Merlin GeneMark.hmm exon 74744 74893 . + . ID=Merlin_123_exon;Parent=Merlin_123_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 74744 74893 . + 0 ID=Merlin_123_CDS;Parent=Merlin_123_exon;seqid=Merlin +Merlin GeneMark.hmm gene 74890 75141 -315.506963 + . ID=Merlin_124;seqid=Merlin +Merlin GeneMark.hmm mRNA 74890 75141 . + . ID=Merlin_124_mRNA;Parent=Merlin_124;seqid=Merlin +Merlin GeneMark.hmm exon 74890 75141 . + . ID=Merlin_124_exon;Parent=Merlin_124_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 74890 75141 . + 0 ID=Merlin_124_CDS;Parent=Merlin_124_exon;seqid=Merlin +Merlin GeneMark.hmm gene 75141 75602 -594.209518 + . ID=Merlin_125;seqid=Merlin +Merlin GeneMark.hmm mRNA 75141 75602 . + . ID=Merlin_125_mRNA;Parent=Merlin_125;seqid=Merlin +Merlin GeneMark.hmm exon 75141 75602 . + . ID=Merlin_125_exon;Parent=Merlin_125_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 75141 75602 . + 0 ID=Merlin_125_CDS;Parent=Merlin_125_exon;seqid=Merlin +Merlin GeneMark.hmm gene 75602 75865 -344.721707 + . ID=Merlin_126;seqid=Merlin +Merlin GeneMark.hmm mRNA 75602 75865 . + . ID=Merlin_126_mRNA;Parent=Merlin_126;seqid=Merlin +Merlin GeneMark.hmm exon 75602 75865 . + . ID=Merlin_126_exon;Parent=Merlin_126_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 75602 75865 . + 0 ID=Merlin_126_CDS;Parent=Merlin_126_exon;seqid=Merlin +Merlin GeneMark.hmm gene 75856 76044 -230.523164 + . ID=Merlin_127;seqid=Merlin +Merlin GeneMark.hmm mRNA 75856 76044 . + . ID=Merlin_127_mRNA;Parent=Merlin_127;seqid=Merlin +Merlin GeneMark.hmm exon 75856 76044 . + . ID=Merlin_127_exon;Parent=Merlin_127_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 75856 76044 . + 0 ID=Merlin_127_CDS;Parent=Merlin_127_exon;seqid=Merlin +Merlin GeneMark.hmm gene 76041 76367 -416.228479 + . ID=Merlin_128;seqid=Merlin +Merlin GeneMark.hmm mRNA 76041 76367 . + . ID=Merlin_128_mRNA;Parent=Merlin_128;seqid=Merlin +Merlin GeneMark.hmm exon 76041 76367 . + . ID=Merlin_128_exon;Parent=Merlin_128_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 76041 76367 . + 0 ID=Merlin_128_CDS;Parent=Merlin_128_exon;seqid=Merlin +Merlin GeneMark.hmm gene 76546 77334 -987.711287 + . ID=Merlin_129;seqid=Merlin +Merlin GeneMark.hmm mRNA 76546 77334 . + . ID=Merlin_129_mRNA;Parent=Merlin_129;seqid=Merlin +Merlin GeneMark.hmm exon 76546 77334 . + . ID=Merlin_129_exon;Parent=Merlin_129_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 76546 77334 . + 0 ID=Merlin_129_CDS;Parent=Merlin_129_exon;seqid=Merlin +Merlin GeneMark.hmm gene 77420 78424 -1261.524373 + . ID=Merlin_130;seqid=Merlin +Merlin GeneMark.hmm mRNA 77420 78424 . + . ID=Merlin_130_mRNA;Parent=Merlin_130;seqid=Merlin +Merlin GeneMark.hmm exon 77420 78424 . + . ID=Merlin_130_exon;Parent=Merlin_130_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 77420 78424 . + 0 ID=Merlin_130_CDS;Parent=Merlin_130_exon;seqid=Merlin +Merlin GeneMark.hmm gene 78417 78707 -360.350742 + . ID=Merlin_131;seqid=Merlin +Merlin GeneMark.hmm mRNA 78417 78707 . + . ID=Merlin_131_mRNA;Parent=Merlin_131;seqid=Merlin +Merlin GeneMark.hmm exon 78417 78707 . + . ID=Merlin_131_exon;Parent=Merlin_131_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 78417 78707 . + 0 ID=Merlin_131_CDS;Parent=Merlin_131_exon;seqid=Merlin +Merlin GeneMark.hmm gene 78704 79111 -518.845840 + . ID=Merlin_132;seqid=Merlin +Merlin GeneMark.hmm mRNA 78704 79111 . + . ID=Merlin_132_mRNA;Parent=Merlin_132;seqid=Merlin +Merlin GeneMark.hmm exon 78704 79111 . + . ID=Merlin_132_exon;Parent=Merlin_132_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 78704 79111 . + 0 ID=Merlin_132_CDS;Parent=Merlin_132_exon;seqid=Merlin +Merlin GeneMark.hmm gene 79111 79617 -613.282382 + . ID=Merlin_133;seqid=Merlin +Merlin GeneMark.hmm mRNA 79111 79617 . + . ID=Merlin_133_mRNA;Parent=Merlin_133;seqid=Merlin +Merlin GeneMark.hmm exon 79111 79617 . + . ID=Merlin_133_exon;Parent=Merlin_133_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 79111 79617 . + 0 ID=Merlin_133_CDS;Parent=Merlin_133_exon;seqid=Merlin +Merlin GeneMark.hmm gene 79614 79919 -369.305081 + . ID=Merlin_134;seqid=Merlin +Merlin GeneMark.hmm mRNA 79614 79919 . + . ID=Merlin_134_mRNA;Parent=Merlin_134;seqid=Merlin +Merlin GeneMark.hmm exon 79614 79919 . + . ID=Merlin_134_exon;Parent=Merlin_134_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 79614 79919 . + 0 ID=Merlin_134_CDS;Parent=Merlin_134_exon;seqid=Merlin +Merlin GeneMark.hmm gene 79933 80160 -288.575732 + . ID=Merlin_135;seqid=Merlin +Merlin GeneMark.hmm mRNA 79933 80160 . + . ID=Merlin_135_mRNA;Parent=Merlin_135;seqid=Merlin +Merlin GeneMark.hmm exon 79933 80160 . + . ID=Merlin_135_exon;Parent=Merlin_135_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 79933 80160 . + 0 ID=Merlin_135_CDS;Parent=Merlin_135_exon;seqid=Merlin +Merlin GeneMark.hmm gene 80154 80417 -324.958009 + . ID=Merlin_136;seqid=Merlin +Merlin GeneMark.hmm mRNA 80154 80417 . + . ID=Merlin_136_mRNA;Parent=Merlin_136;seqid=Merlin +Merlin GeneMark.hmm exon 80154 80417 . + . ID=Merlin_136_exon;Parent=Merlin_136_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 80154 80417 . + 0 ID=Merlin_136_CDS;Parent=Merlin_136_exon;seqid=Merlin +Merlin GeneMark.hmm gene 80414 80623 -254.916892 + . ID=Merlin_137;seqid=Merlin +Merlin GeneMark.hmm mRNA 80414 80623 . + . ID=Merlin_137_mRNA;Parent=Merlin_137;seqid=Merlin +Merlin GeneMark.hmm exon 80414 80623 . + . ID=Merlin_137_exon;Parent=Merlin_137_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 80414 80623 . + 0 ID=Merlin_137_CDS;Parent=Merlin_137_exon;seqid=Merlin +Merlin GeneMark.hmm gene 80620 80949 -405.138197 + . ID=Merlin_138;seqid=Merlin +Merlin GeneMark.hmm mRNA 80620 80949 . + . ID=Merlin_138_mRNA;Parent=Merlin_138;seqid=Merlin +Merlin GeneMark.hmm exon 80620 80949 . + . ID=Merlin_138_exon;Parent=Merlin_138_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 80620 80949 . + 0 ID=Merlin_138_CDS;Parent=Merlin_138_exon;seqid=Merlin +Merlin GeneMark.hmm gene 80939 81091 -189.705268 + . ID=Merlin_139;seqid=Merlin +Merlin GeneMark.hmm mRNA 80939 81091 . + . ID=Merlin_139_mRNA;Parent=Merlin_139;seqid=Merlin +Merlin GeneMark.hmm exon 80939 81091 . + . ID=Merlin_139_exon;Parent=Merlin_139_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 80939 81091 . + 0 ID=Merlin_139_CDS;Parent=Merlin_139_exon;seqid=Merlin +Merlin GeneMark.hmm gene 81088 81396 -379.041172 + . ID=Merlin_140;seqid=Merlin +Merlin GeneMark.hmm mRNA 81088 81396 . + . ID=Merlin_140_mRNA;Parent=Merlin_140;seqid=Merlin +Merlin GeneMark.hmm exon 81088 81396 . + . ID=Merlin_140_exon;Parent=Merlin_140_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 81088 81396 . + 0 ID=Merlin_140_CDS;Parent=Merlin_140_exon;seqid=Merlin +Merlin GeneMark.hmm gene 81381 81527 -178.904000 + . ID=Merlin_141;seqid=Merlin +Merlin GeneMark.hmm mRNA 81381 81527 . + . ID=Merlin_141_mRNA;Parent=Merlin_141;seqid=Merlin +Merlin GeneMark.hmm exon 81381 81527 . + . ID=Merlin_141_exon;Parent=Merlin_141_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 81381 81527 . + 0 ID=Merlin_141_CDS;Parent=Merlin_141_exon;seqid=Merlin +Merlin GeneMark.hmm gene 81511 81945 -531.842575 + . ID=Merlin_142;seqid=Merlin +Merlin GeneMark.hmm mRNA 81511 81945 . + . ID=Merlin_142_mRNA;Parent=Merlin_142;seqid=Merlin +Merlin GeneMark.hmm exon 81511 81945 . + . ID=Merlin_142_exon;Parent=Merlin_142_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 81511 81945 . + 0 ID=Merlin_142_CDS;Parent=Merlin_142_exon;seqid=Merlin +Merlin GeneMark.hmm gene 81945 82109 -200.193240 + . ID=Merlin_143;seqid=Merlin +Merlin GeneMark.hmm mRNA 81945 82109 . + . ID=Merlin_143_mRNA;Parent=Merlin_143;seqid=Merlin +Merlin GeneMark.hmm exon 81945 82109 . + . ID=Merlin_143_exon;Parent=Merlin_143_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 81945 82109 . + 0 ID=Merlin_143_CDS;Parent=Merlin_143_exon;seqid=Merlin +Merlin GeneMark.hmm gene 82145 82618 -597.711728 + . ID=Merlin_144;seqid=Merlin +Merlin GeneMark.hmm mRNA 82145 82618 . + . ID=Merlin_144_mRNA;Parent=Merlin_144;seqid=Merlin +Merlin GeneMark.hmm exon 82145 82618 . + . ID=Merlin_144_exon;Parent=Merlin_144_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 82145 82618 . + 0 ID=Merlin_144_CDS;Parent=Merlin_144_exon;seqid=Merlin +Merlin GeneMark.hmm gene 82615 84444 -2332.730592 + . ID=Merlin_145;seqid=Merlin +Merlin GeneMark.hmm mRNA 82615 84444 . + . ID=Merlin_145_mRNA;Parent=Merlin_145;seqid=Merlin +Merlin GeneMark.hmm exon 82615 84444 . + . ID=Merlin_145_exon;Parent=Merlin_145_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 82615 84444 . + 0 ID=Merlin_145_CDS;Parent=Merlin_145_exon;seqid=Merlin +Merlin GeneMark.hmm gene 84512 84928 -529.993287 + . ID=Merlin_146;seqid=Merlin +Merlin GeneMark.hmm mRNA 84512 84928 . + . ID=Merlin_146_mRNA;Parent=Merlin_146;seqid=Merlin +Merlin GeneMark.hmm exon 84512 84928 . + . ID=Merlin_146_exon;Parent=Merlin_146_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 84512 84928 . + 0 ID=Merlin_146_CDS;Parent=Merlin_146_exon;seqid=Merlin +Merlin GeneMark.hmm gene 85016 85309 -372.795932 + . ID=Merlin_147;seqid=Merlin +Merlin GeneMark.hmm mRNA 85016 85309 . + . ID=Merlin_147_mRNA;Parent=Merlin_147;seqid=Merlin +Merlin GeneMark.hmm exon 85016 85309 . + . ID=Merlin_147_exon;Parent=Merlin_147_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 85016 85309 . + 0 ID=Merlin_147_CDS;Parent=Merlin_147_exon;seqid=Merlin +Merlin GeneMark.hmm gene 85459 85722 -330.097448 + . ID=Merlin_148;seqid=Merlin +Merlin GeneMark.hmm mRNA 85459 85722 . + . ID=Merlin_148_mRNA;Parent=Merlin_148;seqid=Merlin +Merlin GeneMark.hmm exon 85459 85722 . + . ID=Merlin_148_exon;Parent=Merlin_148_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 85459 85722 . + 0 ID=Merlin_148_CDS;Parent=Merlin_148_exon;seqid=Merlin +Merlin GeneMark.hmm gene 85722 85910 -230.155567 + . ID=Merlin_149;seqid=Merlin +Merlin GeneMark.hmm mRNA 85722 85910 . + . ID=Merlin_149_mRNA;Parent=Merlin_149;seqid=Merlin +Merlin GeneMark.hmm exon 85722 85910 . + . ID=Merlin_149_exon;Parent=Merlin_149_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 85722 85910 . + 0 ID=Merlin_149_CDS;Parent=Merlin_149_exon;seqid=Merlin +Merlin GeneMark.hmm gene 85903 86166 -332.190142 + . ID=Merlin_150;seqid=Merlin +Merlin GeneMark.hmm mRNA 85903 86166 . + . ID=Merlin_150_mRNA;Parent=Merlin_150;seqid=Merlin +Merlin GeneMark.hmm exon 85903 86166 . + . ID=Merlin_150_exon;Parent=Merlin_150_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 85903 86166 . + 0 ID=Merlin_150_CDS;Parent=Merlin_150_exon;seqid=Merlin +Merlin GeneMark.hmm gene 86229 86555 -399.176919 + . ID=Merlin_151;seqid=Merlin +Merlin GeneMark.hmm mRNA 86229 86555 . + . ID=Merlin_151_mRNA;Parent=Merlin_151;seqid=Merlin +Merlin GeneMark.hmm exon 86229 86555 . + . ID=Merlin_151_exon;Parent=Merlin_151_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 86229 86555 . + 0 ID=Merlin_151_CDS;Parent=Merlin_151_exon;seqid=Merlin +Merlin GeneMark.hmm gene 86552 86833 -365.746982 + . ID=Merlin_152;seqid=Merlin +Merlin GeneMark.hmm mRNA 86552 86833 . + . ID=Merlin_152_mRNA;Parent=Merlin_152;seqid=Merlin +Merlin GeneMark.hmm exon 86552 86833 . + . ID=Merlin_152_exon;Parent=Merlin_152_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 86552 86833 . + 0 ID=Merlin_152_CDS;Parent=Merlin_152_exon;seqid=Merlin +Merlin GeneMark.hmm gene 86826 87074 -314.427851 + . ID=Merlin_153;seqid=Merlin +Merlin GeneMark.hmm mRNA 86826 87074 . + . ID=Merlin_153_mRNA;Parent=Merlin_153;seqid=Merlin +Merlin GeneMark.hmm exon 86826 87074 . + . ID=Merlin_153_exon;Parent=Merlin_153_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 86826 87074 . + 0 ID=Merlin_153_CDS;Parent=Merlin_153_exon;seqid=Merlin +Merlin GeneMark.hmm gene 87067 87291 -270.187122 + . ID=Merlin_154;seqid=Merlin +Merlin GeneMark.hmm mRNA 87067 87291 . + . ID=Merlin_154_mRNA;Parent=Merlin_154;seqid=Merlin +Merlin GeneMark.hmm exon 87067 87291 . + . ID=Merlin_154_exon;Parent=Merlin_154_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 87067 87291 . + 0 ID=Merlin_154_CDS;Parent=Merlin_154_exon;seqid=Merlin +Merlin GeneMark.hmm gene 87288 87548 -320.850170 + . ID=Merlin_155;seqid=Merlin +Merlin GeneMark.hmm mRNA 87288 87548 . + . ID=Merlin_155_mRNA;Parent=Merlin_155;seqid=Merlin +Merlin GeneMark.hmm exon 87288 87548 . + . ID=Merlin_155_exon;Parent=Merlin_155_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 87288 87548 . + 0 ID=Merlin_155_CDS;Parent=Merlin_155_exon;seqid=Merlin +Merlin GeneMark.hmm gene 87545 87838 -368.941897 + . ID=Merlin_156;seqid=Merlin +Merlin GeneMark.hmm mRNA 87545 87838 . + . ID=Merlin_156_mRNA;Parent=Merlin_156;seqid=Merlin +Merlin GeneMark.hmm exon 87545 87838 . + . ID=Merlin_156_exon;Parent=Merlin_156_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 87545 87838 . + 0 ID=Merlin_156_CDS;Parent=Merlin_156_exon;seqid=Merlin +Merlin GeneMark.hmm gene 87906 88445 -686.934268 + . ID=Merlin_157;seqid=Merlin +Merlin GeneMark.hmm mRNA 87906 88445 . + . ID=Merlin_157_mRNA;Parent=Merlin_157;seqid=Merlin +Merlin GeneMark.hmm exon 87906 88445 . + . ID=Merlin_157_exon;Parent=Merlin_157_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 87906 88445 . + 0 ID=Merlin_157_CDS;Parent=Merlin_157_exon;seqid=Merlin +Merlin GeneMark.hmm gene 88429 88656 -293.300141 + . ID=Merlin_158;seqid=Merlin +Merlin GeneMark.hmm mRNA 88429 88656 . + . ID=Merlin_158_mRNA;Parent=Merlin_158;seqid=Merlin +Merlin GeneMark.hmm exon 88429 88656 . + . ID=Merlin_158_exon;Parent=Merlin_158_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 88429 88656 . + 0 ID=Merlin_158_CDS;Parent=Merlin_158_exon;seqid=Merlin +Merlin GeneMark.hmm gene 88663 89031 -446.339761 + . ID=Merlin_159;seqid=Merlin +Merlin GeneMark.hmm mRNA 88663 89031 . + . ID=Merlin_159_mRNA;Parent=Merlin_159;seqid=Merlin +Merlin GeneMark.hmm exon 88663 89031 . + . ID=Merlin_159_exon;Parent=Merlin_159_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 88663 89031 . + 0 ID=Merlin_159_CDS;Parent=Merlin_159_exon;seqid=Merlin +Merlin GeneMark.hmm gene 89012 89221 -255.579886 + . ID=Merlin_160;seqid=Merlin +Merlin GeneMark.hmm mRNA 89012 89221 . + . ID=Merlin_160_mRNA;Parent=Merlin_160;seqid=Merlin +Merlin GeneMark.hmm exon 89012 89221 . + . ID=Merlin_160_exon;Parent=Merlin_160_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 89012 89221 . + 0 ID=Merlin_160_CDS;Parent=Merlin_160_exon;seqid=Merlin +Merlin GeneMark.hmm gene 89206 89394 -231.007880 + . ID=Merlin_161;seqid=Merlin +Merlin GeneMark.hmm mRNA 89206 89394 . + . ID=Merlin_161_mRNA;Parent=Merlin_161;seqid=Merlin +Merlin GeneMark.hmm exon 89206 89394 . + . ID=Merlin_161_exon;Parent=Merlin_161_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 89206 89394 . + 0 ID=Merlin_161_CDS;Parent=Merlin_161_exon;seqid=Merlin +Merlin GeneMark.hmm gene 89426 89764 -419.076718 + . ID=Merlin_162;seqid=Merlin +Merlin GeneMark.hmm mRNA 89426 89764 . + . ID=Merlin_162_mRNA;Parent=Merlin_162;seqid=Merlin +Merlin GeneMark.hmm exon 89426 89764 . + . ID=Merlin_162_exon;Parent=Merlin_162_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 89426 89764 . + 0 ID=Merlin_162_CDS;Parent=Merlin_162_exon;seqid=Merlin +Merlin GeneMark.hmm gene 89826 89969 -185.055842 + . ID=Merlin_163;seqid=Merlin +Merlin GeneMark.hmm mRNA 89826 89969 . + . ID=Merlin_163_mRNA;Parent=Merlin_163;seqid=Merlin +Merlin GeneMark.hmm exon 89826 89969 . + . ID=Merlin_163_exon;Parent=Merlin_163_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 89826 89969 . + 0 ID=Merlin_163_CDS;Parent=Merlin_163_exon;seqid=Merlin +Merlin GeneMark.hmm gene 89966 90988 -1312.043599 + . ID=Merlin_164;seqid=Merlin +Merlin GeneMark.hmm mRNA 89966 90988 . + . ID=Merlin_164_mRNA;Parent=Merlin_164;seqid=Merlin +Merlin GeneMark.hmm exon 89966 90988 . + . ID=Merlin_164_exon;Parent=Merlin_164_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 89966 90988 . + 0 ID=Merlin_164_CDS;Parent=Merlin_164_exon;seqid=Merlin +Merlin GeneMark.hmm gene 90985 91191 -254.724476 + . ID=Merlin_165;seqid=Merlin +Merlin GeneMark.hmm mRNA 90985 91191 . + . ID=Merlin_165_mRNA;Parent=Merlin_165;seqid=Merlin +Merlin GeneMark.hmm exon 90985 91191 . + . ID=Merlin_165_exon;Parent=Merlin_165_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 90985 91191 . + 0 ID=Merlin_165_CDS;Parent=Merlin_165_exon;seqid=Merlin +Merlin GeneMark.hmm gene 91188 92870 -2159.860384 + . ID=Merlin_166;seqid=Merlin +Merlin GeneMark.hmm mRNA 91188 92870 . + . ID=Merlin_166_mRNA;Parent=Merlin_166;seqid=Merlin +Merlin GeneMark.hmm exon 91188 92870 . + . ID=Merlin_166_exon;Parent=Merlin_166_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 91188 92870 . + 0 ID=Merlin_166_CDS;Parent=Merlin_166_exon;seqid=Merlin +Merlin GeneMark.hmm gene 92867 93058 -240.822321 + . ID=Merlin_167;seqid=Merlin +Merlin GeneMark.hmm mRNA 92867 93058 . + . ID=Merlin_167_mRNA;Parent=Merlin_167;seqid=Merlin +Merlin GeneMark.hmm exon 92867 93058 . + . ID=Merlin_167_exon;Parent=Merlin_167_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 92867 93058 . + 0 ID=Merlin_167_CDS;Parent=Merlin_167_exon;seqid=Merlin +Merlin GeneMark.hmm gene 93067 93450 -466.762497 + . ID=Merlin_168;seqid=Merlin +Merlin GeneMark.hmm mRNA 93067 93450 . + . ID=Merlin_168_mRNA;Parent=Merlin_168;seqid=Merlin +Merlin GeneMark.hmm exon 93067 93450 . + . ID=Merlin_168_exon;Parent=Merlin_168_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 93067 93450 . + 0 ID=Merlin_168_CDS;Parent=Merlin_168_exon;seqid=Merlin +Merlin GeneMark.hmm gene 93469 94155 -853.161656 + . ID=Merlin_169;seqid=Merlin +Merlin GeneMark.hmm mRNA 93469 94155 . + . ID=Merlin_169_mRNA;Parent=Merlin_169;seqid=Merlin +Merlin GeneMark.hmm exon 93469 94155 . + . ID=Merlin_169_exon;Parent=Merlin_169_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 93469 94155 . + 0 ID=Merlin_169_CDS;Parent=Merlin_169_exon;seqid=Merlin +Merlin GeneMark.hmm gene 94209 95174 -1219.402057 + . ID=Merlin_170;seqid=Merlin +Merlin GeneMark.hmm mRNA 94209 95174 . + . ID=Merlin_170_mRNA;Parent=Merlin_170;seqid=Merlin +Merlin GeneMark.hmm exon 94209 95174 . + . ID=Merlin_170_exon;Parent=Merlin_170_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 94209 95174 . + 0 ID=Merlin_170_CDS;Parent=Merlin_170_exon;seqid=Merlin +Merlin GeneMark.hmm gene 95174 95737 -724.605488 + . ID=Merlin_171;seqid=Merlin +Merlin GeneMark.hmm mRNA 95174 95737 . + . ID=Merlin_171_mRNA;Parent=Merlin_171;seqid=Merlin +Merlin GeneMark.hmm exon 95174 95737 . + . ID=Merlin_171_exon;Parent=Merlin_171_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 95174 95737 . + 0 ID=Merlin_171_CDS;Parent=Merlin_171_exon;seqid=Merlin +Merlin GeneMark.hmm gene 95731 96108 -464.835446 + . ID=Merlin_172;seqid=Merlin +Merlin GeneMark.hmm mRNA 95731 96108 . + . ID=Merlin_172_mRNA;Parent=Merlin_172;seqid=Merlin +Merlin GeneMark.hmm exon 95731 96108 . + . ID=Merlin_172_exon;Parent=Merlin_172_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 95731 96108 . + 0 ID=Merlin_172_CDS;Parent=Merlin_172_exon;seqid=Merlin +Merlin GeneMark.hmm gene 96110 96331 -276.260456 + . ID=Merlin_173;seqid=Merlin +Merlin GeneMark.hmm mRNA 96110 96331 . + . ID=Merlin_173_mRNA;Parent=Merlin_173;seqid=Merlin +Merlin GeneMark.hmm exon 96110 96331 . + . ID=Merlin_173_exon;Parent=Merlin_173_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 96110 96331 . + 0 ID=Merlin_173_CDS;Parent=Merlin_173_exon;seqid=Merlin +Merlin GeneMark.hmm gene 96426 99116 -3385.938661 + . ID=Merlin_174;seqid=Merlin +Merlin GeneMark.hmm mRNA 96426 99116 . + . ID=Merlin_174_mRNA;Parent=Merlin_174;seqid=Merlin +Merlin GeneMark.hmm exon 96426 99116 . + . ID=Merlin_174_exon;Parent=Merlin_174_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 96426 99116 . + 0 ID=Merlin_174_CDS;Parent=Merlin_174_exon;seqid=Merlin +Merlin GeneMark.hmm gene 99179 99418 -294.745409 + . ID=Merlin_175;seqid=Merlin +Merlin GeneMark.hmm mRNA 99179 99418 . + . ID=Merlin_175_mRNA;Parent=Merlin_175;seqid=Merlin +Merlin GeneMark.hmm exon 99179 99418 . + . ID=Merlin_175_exon;Parent=Merlin_175_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 99179 99418 . + 0 ID=Merlin_175_CDS;Parent=Merlin_175_exon;seqid=Merlin +Merlin GeneMark.hmm gene 99455 99895 -551.164186 + . ID=Merlin_176;seqid=Merlin +Merlin GeneMark.hmm mRNA 99455 99895 . + . ID=Merlin_176_mRNA;Parent=Merlin_176;seqid=Merlin +Merlin GeneMark.hmm exon 99455 99895 . + . ID=Merlin_176_exon;Parent=Merlin_176_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 99455 99895 . + 0 ID=Merlin_176_CDS;Parent=Merlin_176_exon;seqid=Merlin +Merlin GeneMark.hmm gene 99928 100140 -262.065624 + . ID=Merlin_177;seqid=Merlin +Merlin GeneMark.hmm mRNA 99928 100140 . + . ID=Merlin_177_mRNA;Parent=Merlin_177;seqid=Merlin +Merlin GeneMark.hmm exon 99928 100140 . + . ID=Merlin_177_exon;Parent=Merlin_177_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 99928 100140 . + 0 ID=Merlin_177_CDS;Parent=Merlin_177_exon;seqid=Merlin +Merlin GeneMark.hmm gene 100137 100877 -927.530517 + . ID=Merlin_178;seqid=Merlin +Merlin GeneMark.hmm mRNA 100137 100877 . + . ID=Merlin_178_mRNA;Parent=Merlin_178;seqid=Merlin +Merlin GeneMark.hmm exon 100137 100877 . + . ID=Merlin_178_exon;Parent=Merlin_178_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 100137 100877 . + 0 ID=Merlin_178_CDS;Parent=Merlin_178_exon;seqid=Merlin +Merlin GeneMark.hmm gene 100868 101704 -1058.313313 + . ID=Merlin_179;seqid=Merlin +Merlin GeneMark.hmm mRNA 100868 101704 . + . ID=Merlin_179_mRNA;Parent=Merlin_179;seqid=Merlin +Merlin GeneMark.hmm exon 100868 101704 . + . ID=Merlin_179_exon;Parent=Merlin_179_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 100868 101704 . + 0 ID=Merlin_179_CDS;Parent=Merlin_179_exon;seqid=Merlin +Merlin GeneMark.hmm gene 101701 102777 -1345.602625 + . ID=Merlin_180;seqid=Merlin +Merlin GeneMark.hmm mRNA 101701 102777 . + . ID=Merlin_180_mRNA;Parent=Merlin_180;seqid=Merlin +Merlin GeneMark.hmm exon 101701 102777 . + . ID=Merlin_180_exon;Parent=Merlin_180_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 101701 102777 . + 0 ID=Merlin_180_CDS;Parent=Merlin_180_exon;seqid=Merlin +Merlin GeneMark.hmm gene 102885 104072 -1483.608352 + . ID=Merlin_181;seqid=Merlin +Merlin GeneMark.hmm mRNA 102885 104072 . + . ID=Merlin_181_mRNA;Parent=Merlin_181;seqid=Merlin +Merlin GeneMark.hmm exon 102885 104072 . + . ID=Merlin_181_exon;Parent=Merlin_181_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 102885 104072 . + 0 ID=Merlin_181_CDS;Parent=Merlin_181_exon;seqid=Merlin +Merlin GeneMark.hmm gene 104072 104422 -451.869493 + . ID=Merlin_182;seqid=Merlin +Merlin GeneMark.hmm mRNA 104072 104422 . + . ID=Merlin_182_mRNA;Parent=Merlin_182;seqid=Merlin +Merlin GeneMark.hmm exon 104072 104422 . + . ID=Merlin_182_exon;Parent=Merlin_182_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 104072 104422 . + 0 ID=Merlin_182_CDS;Parent=Merlin_182_exon;seqid=Merlin +Merlin GeneMark.hmm gene 104500 105867 -1730.587045 + . ID=Merlin_183;seqid=Merlin +Merlin GeneMark.hmm mRNA 104500 105867 . + . ID=Merlin_183_mRNA;Parent=Merlin_183;seqid=Merlin +Merlin GeneMark.hmm exon 104500 105867 . + . ID=Merlin_183_exon;Parent=Merlin_183_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 104500 105867 . + 0 ID=Merlin_183_CDS;Parent=Merlin_183_exon;seqid=Merlin +Merlin GeneMark.hmm gene 105928 106209 -352.988779 + . ID=Merlin_184;seqid=Merlin +Merlin GeneMark.hmm mRNA 105928 106209 . + . ID=Merlin_184_mRNA;Parent=Merlin_184;seqid=Merlin +Merlin GeneMark.hmm exon 105928 106209 . + . ID=Merlin_184_exon;Parent=Merlin_184_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 105928 106209 . + 0 ID=Merlin_184_CDS;Parent=Merlin_184_exon;seqid=Merlin +Merlin GeneMark.hmm gene 106209 106487 -351.122469 + . ID=Merlin_185;seqid=Merlin +Merlin GeneMark.hmm mRNA 106209 106487 . + . ID=Merlin_185_mRNA;Parent=Merlin_185;seqid=Merlin +Merlin GeneMark.hmm exon 106209 106487 . + . ID=Merlin_185_exon;Parent=Merlin_185_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 106209 106487 . + 0 ID=Merlin_185_CDS;Parent=Merlin_185_exon;seqid=Merlin +Merlin GeneMark.hmm gene 106487 106684 -246.970187 + . ID=Merlin_186;seqid=Merlin +Merlin GeneMark.hmm mRNA 106487 106684 . + . ID=Merlin_186_mRNA;Parent=Merlin_186;seqid=Merlin +Merlin GeneMark.hmm exon 106487 106684 . + . ID=Merlin_186_exon;Parent=Merlin_186_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 106487 106684 . + 0 ID=Merlin_186_CDS;Parent=Merlin_186_exon;seqid=Merlin +Merlin GeneMark.hmm gene 106699 107163 -615.053890 + . ID=Merlin_187;seqid=Merlin +Merlin GeneMark.hmm mRNA 106699 107163 . + . ID=Merlin_187_mRNA;Parent=Merlin_187;seqid=Merlin +Merlin GeneMark.hmm exon 106699 107163 . + . ID=Merlin_187_exon;Parent=Merlin_187_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 106699 107163 . + 0 ID=Merlin_187_CDS;Parent=Merlin_187_exon;seqid=Merlin +Merlin GeneMark.hmm gene 107200 108225 -1324.566436 + . ID=Merlin_188;seqid=Merlin +Merlin GeneMark.hmm mRNA 107200 108225 . + . ID=Merlin_188_mRNA;Parent=Merlin_188;seqid=Merlin +Merlin GeneMark.hmm exon 107200 108225 . + . ID=Merlin_188_exon;Parent=Merlin_188_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 107200 108225 . + 0 ID=Merlin_188_CDS;Parent=Merlin_188_exon;seqid=Merlin +Merlin GeneMark.hmm gene 108222 108419 -244.299886 - . ID=Merlin_189;seqid=Merlin +Merlin GeneMark.hmm mRNA 108222 108419 . - . ID=Merlin_189_mRNA;Parent=Merlin_189;seqid=Merlin +Merlin GeneMark.hmm exon 108222 108419 . - . ID=Merlin_189_exon;Parent=Merlin_189_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 108222 108419 . - 0 ID=Merlin_189_CDS;Parent=Merlin_189_exon;seqid=Merlin +Merlin GeneMark.hmm gene 108443 108727 -361.722638 + . ID=Merlin_190;seqid=Merlin +Merlin GeneMark.hmm mRNA 108443 108727 . + . ID=Merlin_190_mRNA;Parent=Merlin_190;seqid=Merlin +Merlin GeneMark.hmm exon 108443 108727 . + . ID=Merlin_190_exon;Parent=Merlin_190_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 108443 108727 . + 0 ID=Merlin_190_CDS;Parent=Merlin_190_exon;seqid=Merlin +Merlin GeneMark.hmm gene 108746 109267 -660.122856 + . ID=Merlin_191;seqid=Merlin +Merlin GeneMark.hmm mRNA 108746 109267 . + . ID=Merlin_191_mRNA;Parent=Merlin_191;seqid=Merlin +Merlin GeneMark.hmm exon 108746 109267 . + . ID=Merlin_191_exon;Parent=Merlin_191_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 108746 109267 . + 0 ID=Merlin_191_CDS;Parent=Merlin_191_exon;seqid=Merlin +Merlin GeneMark.hmm gene 109283 109450 -207.369336 + . ID=Merlin_192;seqid=Merlin +Merlin GeneMark.hmm mRNA 109283 109450 . + . ID=Merlin_192_mRNA;Parent=Merlin_192;seqid=Merlin +Merlin GeneMark.hmm exon 109283 109450 . + . ID=Merlin_192_exon;Parent=Merlin_192_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 109283 109450 . + 0 ID=Merlin_192_CDS;Parent=Merlin_192_exon;seqid=Merlin +Merlin GeneMark.hmm gene 109463 109684 -282.485263 + . ID=Merlin_193;seqid=Merlin +Merlin GeneMark.hmm mRNA 109463 109684 . + . ID=Merlin_193_mRNA;Parent=Merlin_193;seqid=Merlin +Merlin GeneMark.hmm exon 109463 109684 . + . ID=Merlin_193_exon;Parent=Merlin_193_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 109463 109684 . + 0 ID=Merlin_193_CDS;Parent=Merlin_193_exon;seqid=Merlin +Merlin GeneMark.hmm gene 109681 109833 -188.437796 + . ID=Merlin_194;seqid=Merlin +Merlin GeneMark.hmm mRNA 109681 109833 . + . ID=Merlin_194_mRNA;Parent=Merlin_194;seqid=Merlin +Merlin GeneMark.hmm exon 109681 109833 . + . ID=Merlin_194_exon;Parent=Merlin_194_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 109681 109833 . + 0 ID=Merlin_194_CDS;Parent=Merlin_194_exon;seqid=Merlin +Merlin GeneMark.hmm gene 109868 110107 -300.363740 + . ID=Merlin_195;seqid=Merlin +Merlin GeneMark.hmm mRNA 109868 110107 . + . ID=Merlin_195_mRNA;Parent=Merlin_195;seqid=Merlin +Merlin GeneMark.hmm exon 109868 110107 . + . ID=Merlin_195_exon;Parent=Merlin_195_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 109868 110107 . + 0 ID=Merlin_195_CDS;Parent=Merlin_195_exon;seqid=Merlin +Merlin GeneMark.hmm gene 110187 110387 -242.566720 + . ID=Merlin_196;seqid=Merlin +Merlin GeneMark.hmm mRNA 110187 110387 . + . ID=Merlin_196_mRNA;Parent=Merlin_196;seqid=Merlin +Merlin GeneMark.hmm exon 110187 110387 . + . ID=Merlin_196_exon;Parent=Merlin_196_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 110187 110387 . + 0 ID=Merlin_196_CDS;Parent=Merlin_196_exon;seqid=Merlin +Merlin GeneMark.hmm gene 110384 110623 -295.174485 + . ID=Merlin_197;seqid=Merlin +Merlin GeneMark.hmm mRNA 110384 110623 . + . ID=Merlin_197_mRNA;Parent=Merlin_197;seqid=Merlin +Merlin GeneMark.hmm exon 110384 110623 . + . ID=Merlin_197_exon;Parent=Merlin_197_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 110384 110623 . + 0 ID=Merlin_197_CDS;Parent=Merlin_197_exon;seqid=Merlin +Merlin GeneMark.hmm gene 110620 111051 -544.978023 + . ID=Merlin_198;seqid=Merlin +Merlin GeneMark.hmm mRNA 110620 111051 . + . ID=Merlin_198_mRNA;Parent=Merlin_198;seqid=Merlin +Merlin GeneMark.hmm exon 110620 111051 . + . ID=Merlin_198_exon;Parent=Merlin_198_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 110620 111051 . + 0 ID=Merlin_198_CDS;Parent=Merlin_198_exon;seqid=Merlin +Merlin GeneMark.hmm gene 111101 111238 -161.794612 + . ID=Merlin_199;seqid=Merlin +Merlin GeneMark.hmm mRNA 111101 111238 . + . ID=Merlin_199_mRNA;Parent=Merlin_199;seqid=Merlin +Merlin GeneMark.hmm exon 111101 111238 . + . ID=Merlin_199_exon;Parent=Merlin_199_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 111101 111238 . + 0 ID=Merlin_199_CDS;Parent=Merlin_199_exon;seqid=Merlin +Merlin GeneMark.hmm gene 111213 111737 -670.599096 + . ID=Merlin_200;seqid=Merlin +Merlin GeneMark.hmm mRNA 111213 111737 . + . ID=Merlin_200_mRNA;Parent=Merlin_200;seqid=Merlin +Merlin GeneMark.hmm exon 111213 111737 . + . ID=Merlin_200_exon;Parent=Merlin_200_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 111213 111737 . + 0 ID=Merlin_200_CDS;Parent=Merlin_200_exon;seqid=Merlin +Merlin GeneMark.hmm gene 111737 111913 -223.231704 + . ID=Merlin_201;seqid=Merlin +Merlin GeneMark.hmm mRNA 111737 111913 . + . ID=Merlin_201_mRNA;Parent=Merlin_201;seqid=Merlin +Merlin GeneMark.hmm exon 111737 111913 . + . ID=Merlin_201_exon;Parent=Merlin_201_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 111737 111913 . + 0 ID=Merlin_201_CDS;Parent=Merlin_201_exon;seqid=Merlin +Merlin GeneMark.hmm gene 111973 112590 -802.696887 + . ID=Merlin_202;seqid=Merlin +Merlin GeneMark.hmm mRNA 111973 112590 . + . ID=Merlin_202_mRNA;Parent=Merlin_202;seqid=Merlin +Merlin GeneMark.hmm exon 111973 112590 . + . ID=Merlin_202_exon;Parent=Merlin_202_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 111973 112590 . + 0 ID=Merlin_202_CDS;Parent=Merlin_202_exon;seqid=Merlin +Merlin GeneMark.hmm gene 112676 113461 -994.252012 + . ID=Merlin_203;seqid=Merlin +Merlin GeneMark.hmm mRNA 112676 113461 . + . ID=Merlin_203_mRNA;Parent=Merlin_203;seqid=Merlin +Merlin GeneMark.hmm exon 112676 113461 . + . ID=Merlin_203_exon;Parent=Merlin_203_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 112676 113461 . + 0 ID=Merlin_203_CDS;Parent=Merlin_203_exon;seqid=Merlin +Merlin GeneMark.hmm gene 113461 113778 -389.300206 + . ID=Merlin_204;seqid=Merlin +Merlin GeneMark.hmm mRNA 113461 113778 . + . ID=Merlin_204_mRNA;Parent=Merlin_204;seqid=Merlin +Merlin GeneMark.hmm exon 113461 113778 . + . ID=Merlin_204_exon;Parent=Merlin_204_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 113461 113778 . + 0 ID=Merlin_204_CDS;Parent=Merlin_204_exon;seqid=Merlin +Merlin GeneMark.hmm gene 113787 115118 -1697.881894 + . ID=Merlin_205;seqid=Merlin +Merlin GeneMark.hmm mRNA 113787 115118 . + . ID=Merlin_205_mRNA;Parent=Merlin_205;seqid=Merlin +Merlin GeneMark.hmm exon 113787 115118 . + . ID=Merlin_205_exon;Parent=Merlin_205_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 113787 115118 . + 0 ID=Merlin_205_CDS;Parent=Merlin_205_exon;seqid=Merlin +Merlin GeneMark.hmm gene 115125 115355 -279.940476 + . ID=Merlin_206;seqid=Merlin +Merlin GeneMark.hmm mRNA 115125 115355 . + . ID=Merlin_206_mRNA;Parent=Merlin_206;seqid=Merlin +Merlin GeneMark.hmm exon 115125 115355 . + . ID=Merlin_206_exon;Parent=Merlin_206_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 115125 115355 . + 0 ID=Merlin_206_CDS;Parent=Merlin_206_exon;seqid=Merlin +Merlin GeneMark.hmm gene 115346 116038 -870.417189 + . ID=Merlin_207;seqid=Merlin +Merlin GeneMark.hmm mRNA 115346 116038 . + . ID=Merlin_207_mRNA;Parent=Merlin_207;seqid=Merlin +Merlin GeneMark.hmm exon 115346 116038 . + . ID=Merlin_207_exon;Parent=Merlin_207_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 115346 116038 . + 0 ID=Merlin_207_CDS;Parent=Merlin_207_exon;seqid=Merlin +Merlin GeneMark.hmm gene 116040 116453 -527.653367 + . ID=Merlin_208;seqid=Merlin +Merlin GeneMark.hmm mRNA 116040 116453 . + . ID=Merlin_208_mRNA;Parent=Merlin_208;seqid=Merlin +Merlin GeneMark.hmm exon 116040 116453 . + . ID=Merlin_208_exon;Parent=Merlin_208_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 116040 116453 . + 0 ID=Merlin_208_CDS;Parent=Merlin_208_exon;seqid=Merlin +Merlin GeneMark.hmm gene 116520 116714 -243.312871 + . ID=Merlin_209;seqid=Merlin +Merlin GeneMark.hmm mRNA 116520 116714 . + . ID=Merlin_209_mRNA;Parent=Merlin_209;seqid=Merlin +Merlin GeneMark.hmm exon 116520 116714 . + . ID=Merlin_209_exon;Parent=Merlin_209_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 116520 116714 . + 0 ID=Merlin_209_CDS;Parent=Merlin_209_exon;seqid=Merlin +Merlin GeneMark.hmm gene 116714 117190 -587.212745 + . ID=Merlin_210;seqid=Merlin +Merlin GeneMark.hmm mRNA 116714 117190 . + . ID=Merlin_210_mRNA;Parent=Merlin_210;seqid=Merlin +Merlin GeneMark.hmm exon 116714 117190 . + . ID=Merlin_210_exon;Parent=Merlin_210_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 116714 117190 . + 0 ID=Merlin_210_CDS;Parent=Merlin_210_exon;seqid=Merlin +Merlin GeneMark.hmm gene 117177 117371 -246.741774 + . ID=Merlin_211;seqid=Merlin +Merlin GeneMark.hmm mRNA 117177 117371 . + . ID=Merlin_211_mRNA;Parent=Merlin_211;seqid=Merlin +Merlin GeneMark.hmm exon 117177 117371 . + . ID=Merlin_211_exon;Parent=Merlin_211_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 117177 117371 . + 0 ID=Merlin_211_CDS;Parent=Merlin_211_exon;seqid=Merlin +Merlin GeneMark.hmm gene 117368 117844 -587.223837 + . ID=Merlin_212;seqid=Merlin +Merlin GeneMark.hmm mRNA 117368 117844 . + . ID=Merlin_212_mRNA;Parent=Merlin_212;seqid=Merlin +Merlin GeneMark.hmm exon 117368 117844 . + . ID=Merlin_212_exon;Parent=Merlin_212_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 117368 117844 . + 0 ID=Merlin_212_CDS;Parent=Merlin_212_exon;seqid=Merlin +Merlin GeneMark.hmm gene 117841 117939 -117.153787 + . ID=Merlin_213;seqid=Merlin +Merlin GeneMark.hmm mRNA 117841 117939 . + . ID=Merlin_213_mRNA;Parent=Merlin_213;seqid=Merlin +Merlin GeneMark.hmm exon 117841 117939 . + . ID=Merlin_213_exon;Parent=Merlin_213_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 117841 117939 . + 0 ID=Merlin_213_CDS;Parent=Merlin_213_exon;seqid=Merlin +Merlin GeneMark.hmm gene 117936 118187 -314.341261 + . ID=Merlin_214;seqid=Merlin +Merlin GeneMark.hmm mRNA 117936 118187 . + . ID=Merlin_214_mRNA;Parent=Merlin_214;seqid=Merlin +Merlin GeneMark.hmm exon 117936 118187 . + . ID=Merlin_214_exon;Parent=Merlin_214_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 117936 118187 . + 0 ID=Merlin_214_CDS;Parent=Merlin_214_exon;seqid=Merlin +Merlin GeneMark.hmm gene 118184 118411 -293.015141 + . ID=Merlin_215;seqid=Merlin +Merlin GeneMark.hmm mRNA 118184 118411 . + . ID=Merlin_215_mRNA;Parent=Merlin_215;seqid=Merlin +Merlin GeneMark.hmm exon 118184 118411 . + . ID=Merlin_215_exon;Parent=Merlin_215_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 118184 118411 . + 0 ID=Merlin_215_CDS;Parent=Merlin_215_exon;seqid=Merlin +Merlin GeneMark.hmm gene 118435 118818 -477.204459 + . ID=Merlin_216;seqid=Merlin +Merlin GeneMark.hmm mRNA 118435 118818 . + . ID=Merlin_216_mRNA;Parent=Merlin_216;seqid=Merlin +Merlin GeneMark.hmm exon 118435 118818 . + . ID=Merlin_216_exon;Parent=Merlin_216_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 118435 118818 . + 0 ID=Merlin_216_CDS;Parent=Merlin_216_exon;seqid=Merlin +Merlin GeneMark.hmm gene 118849 120690 -2259.486004 + . ID=Merlin_217;seqid=Merlin +Merlin GeneMark.hmm mRNA 118849 120690 . + . ID=Merlin_217_mRNA;Parent=Merlin_217;seqid=Merlin +Merlin GeneMark.hmm exon 118849 120690 . + . ID=Merlin_217_exon;Parent=Merlin_217_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 118849 120690 . + 0 ID=Merlin_217_CDS;Parent=Merlin_217_exon;seqid=Merlin +Merlin GeneMark.hmm gene 120730 120885 -200.778885 + . ID=Merlin_218;seqid=Merlin +Merlin GeneMark.hmm mRNA 120730 120885 . + . ID=Merlin_218_mRNA;Parent=Merlin_218;seqid=Merlin +Merlin GeneMark.hmm exon 120730 120885 . + . ID=Merlin_218_exon;Parent=Merlin_218_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 120730 120885 . + 0 ID=Merlin_218_CDS;Parent=Merlin_218_exon;seqid=Merlin +Merlin GeneMark.hmm gene 120929 121213 -363.032822 + . ID=Merlin_219;seqid=Merlin +Merlin GeneMark.hmm mRNA 120929 121213 . + . ID=Merlin_219_mRNA;Parent=Merlin_219;seqid=Merlin +Merlin GeneMark.hmm exon 120929 121213 . + . ID=Merlin_219_exon;Parent=Merlin_219_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 120929 121213 . + 0 ID=Merlin_219_CDS;Parent=Merlin_219_exon;seqid=Merlin +Merlin GeneMark.hmm gene 121200 121400 -244.392369 + . ID=Merlin_220;seqid=Merlin +Merlin GeneMark.hmm mRNA 121200 121400 . + . ID=Merlin_220_mRNA;Parent=Merlin_220;seqid=Merlin +Merlin GeneMark.hmm exon 121200 121400 . + . ID=Merlin_220_exon;Parent=Merlin_220_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 121200 121400 . + 0 ID=Merlin_220_CDS;Parent=Merlin_220_exon;seqid=Merlin +Merlin GeneMark.hmm gene 121411 123588 -2750.112191 + . ID=Merlin_221;seqid=Merlin +Merlin GeneMark.hmm mRNA 121411 123588 . + . ID=Merlin_221_mRNA;Parent=Merlin_221;seqid=Merlin +Merlin GeneMark.hmm exon 121411 123588 . + . ID=Merlin_221_exon;Parent=Merlin_221_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 121411 123588 . + 0 ID=Merlin_221_CDS;Parent=Merlin_221_exon;seqid=Merlin +Merlin GeneMark.hmm gene 123598 124494 -1129.990261 + . ID=Merlin_222;seqid=Merlin +Merlin GeneMark.hmm mRNA 123598 124494 . + . ID=Merlin_222_mRNA;Parent=Merlin_222;seqid=Merlin +Merlin GeneMark.hmm exon 123598 124494 . + . ID=Merlin_222_exon;Parent=Merlin_222_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 123598 124494 . + 0 ID=Merlin_222_CDS;Parent=Merlin_222_exon;seqid=Merlin +Merlin GeneMark.hmm gene 124494 124691 -244.507612 + . ID=Merlin_223;seqid=Merlin +Merlin GeneMark.hmm mRNA 124494 124691 . + . ID=Merlin_223_mRNA;Parent=Merlin_223;seqid=Merlin +Merlin GeneMark.hmm exon 124494 124691 . + . ID=Merlin_223_exon;Parent=Merlin_223_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 124494 124691 . + 0 ID=Merlin_223_CDS;Parent=Merlin_223_exon;seqid=Merlin +Merlin GeneMark.hmm gene 124727 125047 -399.871946 + . ID=Merlin_224;seqid=Merlin +Merlin GeneMark.hmm mRNA 124727 125047 . + . ID=Merlin_224_mRNA;Parent=Merlin_224;seqid=Merlin +Merlin GeneMark.hmm exon 124727 125047 . + . ID=Merlin_224_exon;Parent=Merlin_224_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 124727 125047 . + 0 ID=Merlin_224_CDS;Parent=Merlin_224_exon;seqid=Merlin +Merlin GeneMark.hmm gene 125097 125537 -571.759726 + . ID=Merlin_225;seqid=Merlin +Merlin GeneMark.hmm mRNA 125097 125537 . + . ID=Merlin_225_mRNA;Parent=Merlin_225;seqid=Merlin +Merlin GeneMark.hmm exon 125097 125537 . + . ID=Merlin_225_exon;Parent=Merlin_225_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 125097 125537 . + 0 ID=Merlin_225_CDS;Parent=Merlin_225_exon;seqid=Merlin +Merlin GeneMark.hmm gene 125606 125851 -292.219635 + . ID=Merlin_226;seqid=Merlin +Merlin GeneMark.hmm mRNA 125606 125851 . + . ID=Merlin_226_mRNA;Parent=Merlin_226;seqid=Merlin +Merlin GeneMark.hmm exon 125606 125851 . + . ID=Merlin_226_exon;Parent=Merlin_226_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 125606 125851 . + 0 ID=Merlin_226_CDS;Parent=Merlin_226_exon;seqid=Merlin +Merlin GeneMark.hmm gene 125848 126039 -240.766275 + . ID=Merlin_227;seqid=Merlin +Merlin GeneMark.hmm mRNA 125848 126039 . + . ID=Merlin_227_mRNA;Parent=Merlin_227;seqid=Merlin +Merlin GeneMark.hmm exon 125848 126039 . + . ID=Merlin_227_exon;Parent=Merlin_227_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 125848 126039 . + 0 ID=Merlin_227_CDS;Parent=Merlin_227_exon;seqid=Merlin +Merlin GeneMark.hmm gene 126096 126536 -555.654560 + . ID=Merlin_228;seqid=Merlin +Merlin GeneMark.hmm mRNA 126096 126536 . + . ID=Merlin_228_mRNA;Parent=Merlin_228;seqid=Merlin +Merlin GeneMark.hmm exon 126096 126536 . + . ID=Merlin_228_exon;Parent=Merlin_228_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 126096 126536 . + 0 ID=Merlin_228_CDS;Parent=Merlin_228_exon;seqid=Merlin +Merlin GeneMark.hmm gene 126843 126980 -167.572589 + . ID=Merlin_229;seqid=Merlin +Merlin GeneMark.hmm mRNA 126843 126980 . + . ID=Merlin_229_mRNA;Parent=Merlin_229;seqid=Merlin +Merlin GeneMark.hmm exon 126843 126980 . + . ID=Merlin_229_exon;Parent=Merlin_229_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 126843 126980 . + 0 ID=Merlin_229_CDS;Parent=Merlin_229_exon;seqid=Merlin +Merlin GeneMark.hmm gene 126985 128322 -1655.641432 + . ID=Merlin_230;seqid=Merlin +Merlin GeneMark.hmm mRNA 126985 128322 . + . ID=Merlin_230_mRNA;Parent=Merlin_230;seqid=Merlin +Merlin GeneMark.hmm exon 126985 128322 . + . ID=Merlin_230_exon;Parent=Merlin_230_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 126985 128322 . + 0 ID=Merlin_230_CDS;Parent=Merlin_230_exon;seqid=Merlin +Merlin GeneMark.hmm gene 128313 128453 -176.429391 + . ID=Merlin_231;seqid=Merlin +Merlin GeneMark.hmm mRNA 128313 128453 . + . ID=Merlin_231_mRNA;Parent=Merlin_231;seqid=Merlin +Merlin GeneMark.hmm exon 128313 128453 . + . ID=Merlin_231_exon;Parent=Merlin_231_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 128313 128453 . + 0 ID=Merlin_231_CDS;Parent=Merlin_231_exon;seqid=Merlin +Merlin GeneMark.hmm gene 128634 128867 -280.339767 + . ID=Merlin_232;seqid=Merlin +Merlin GeneMark.hmm mRNA 128634 128867 . + . ID=Merlin_232_mRNA;Parent=Merlin_232;seqid=Merlin +Merlin GeneMark.hmm exon 128634 128867 . + . ID=Merlin_232_exon;Parent=Merlin_232_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 128634 128867 . + 0 ID=Merlin_232_CDS;Parent=Merlin_232_exon;seqid=Merlin +Merlin GeneMark.hmm gene 128931 129194 -323.191370 + . ID=Merlin_233;seqid=Merlin +Merlin GeneMark.hmm mRNA 128931 129194 . + . ID=Merlin_233_mRNA;Parent=Merlin_233;seqid=Merlin +Merlin GeneMark.hmm exon 128931 129194 . + . ID=Merlin_233_exon;Parent=Merlin_233_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 128931 129194 . + 0 ID=Merlin_233_CDS;Parent=Merlin_233_exon;seqid=Merlin +Merlin GeneMark.hmm gene 129202 129471 -345.520317 + . ID=Merlin_234;seqid=Merlin +Merlin GeneMark.hmm mRNA 129202 129471 . + . ID=Merlin_234_mRNA;Parent=Merlin_234;seqid=Merlin +Merlin GeneMark.hmm exon 129202 129471 . + . ID=Merlin_234_exon;Parent=Merlin_234_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 129202 129471 . + 0 ID=Merlin_234_CDS;Parent=Merlin_234_exon;seqid=Merlin +Merlin GeneMark.hmm gene 129581 130225 -789.527965 + . ID=Merlin_235;seqid=Merlin +Merlin GeneMark.hmm mRNA 129581 130225 . + . ID=Merlin_235_mRNA;Parent=Merlin_235;seqid=Merlin +Merlin GeneMark.hmm exon 129581 130225 . + . ID=Merlin_235_exon;Parent=Merlin_235_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 129581 130225 . + 0 ID=Merlin_235_CDS;Parent=Merlin_235_exon;seqid=Merlin +Merlin GeneMark.hmm gene 130236 130643 -513.741632 + . ID=Merlin_236;seqid=Merlin +Merlin GeneMark.hmm mRNA 130236 130643 . + . ID=Merlin_236_mRNA;Parent=Merlin_236;seqid=Merlin +Merlin GeneMark.hmm exon 130236 130643 . + . ID=Merlin_236_exon;Parent=Merlin_236_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 130236 130643 . + 0 ID=Merlin_236_CDS;Parent=Merlin_236_exon;seqid=Merlin +Merlin GeneMark.hmm gene 130640 131017 -476.781736 + . ID=Merlin_237;seqid=Merlin +Merlin GeneMark.hmm mRNA 130640 131017 . + . ID=Merlin_237_mRNA;Parent=Merlin_237;seqid=Merlin +Merlin GeneMark.hmm exon 130640 131017 . + . ID=Merlin_237_exon;Parent=Merlin_237_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 130640 131017 . + 0 ID=Merlin_237_CDS;Parent=Merlin_237_exon;seqid=Merlin +Merlin GeneMark.hmm gene 131017 131289 -326.061964 + . ID=Merlin_238;seqid=Merlin +Merlin GeneMark.hmm mRNA 131017 131289 . + . ID=Merlin_238_mRNA;Parent=Merlin_238;seqid=Merlin +Merlin GeneMark.hmm exon 131017 131289 . + . ID=Merlin_238_exon;Parent=Merlin_238_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 131017 131289 . + 0 ID=Merlin_238_CDS;Parent=Merlin_238_exon;seqid=Merlin +Merlin GeneMark.hmm gene 131289 131597 -389.454269 + . ID=Merlin_239;seqid=Merlin +Merlin GeneMark.hmm mRNA 131289 131597 . + . ID=Merlin_239_mRNA;Parent=Merlin_239;seqid=Merlin +Merlin GeneMark.hmm exon 131289 131597 . + . ID=Merlin_239_exon;Parent=Merlin_239_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 131289 131597 . + 0 ID=Merlin_239_CDS;Parent=Merlin_239_exon;seqid=Merlin +Merlin GeneMark.hmm gene 131569 131781 -264.904995 + . ID=Merlin_240;seqid=Merlin +Merlin GeneMark.hmm mRNA 131569 131781 . + . ID=Merlin_240_mRNA;Parent=Merlin_240;seqid=Merlin +Merlin GeneMark.hmm exon 131569 131781 . + . ID=Merlin_240_exon;Parent=Merlin_240_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 131569 131781 . + 0 ID=Merlin_240_CDS;Parent=Merlin_240_exon;seqid=Merlin +Merlin GeneMark.hmm gene 131778 132191 -541.018164 + . ID=Merlin_241;seqid=Merlin +Merlin GeneMark.hmm mRNA 131778 132191 . + . ID=Merlin_241_mRNA;Parent=Merlin_241;seqid=Merlin +Merlin GeneMark.hmm exon 131778 132191 . + . ID=Merlin_241_exon;Parent=Merlin_241_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 131778 132191 . + 0 ID=Merlin_241_CDS;Parent=Merlin_241_exon;seqid=Merlin +Merlin GeneMark.hmm gene 132199 132585 -491.258919 + . ID=Merlin_242;seqid=Merlin +Merlin GeneMark.hmm mRNA 132199 132585 . + . ID=Merlin_242_mRNA;Parent=Merlin_242;seqid=Merlin +Merlin GeneMark.hmm exon 132199 132585 . + . ID=Merlin_242_exon;Parent=Merlin_242_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 132199 132585 . + 0 ID=Merlin_242_CDS;Parent=Merlin_242_exon;seqid=Merlin +Merlin GeneMark.hmm gene 132575 132847 -349.509326 + . ID=Merlin_243;seqid=Merlin +Merlin GeneMark.hmm mRNA 132575 132847 . + . ID=Merlin_243_mRNA;Parent=Merlin_243;seqid=Merlin +Merlin GeneMark.hmm exon 132575 132847 . + . ID=Merlin_243_exon;Parent=Merlin_243_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 132575 132847 . + 0 ID=Merlin_243_CDS;Parent=Merlin_243_exon;seqid=Merlin +Merlin GeneMark.hmm gene 132910 133182 -334.452325 + . ID=Merlin_244;seqid=Merlin +Merlin GeneMark.hmm mRNA 132910 133182 . + . ID=Merlin_244_mRNA;Parent=Merlin_244;seqid=Merlin +Merlin GeneMark.hmm exon 132910 133182 . + . ID=Merlin_244_exon;Parent=Merlin_244_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 132910 133182 . + 0 ID=Merlin_244_CDS;Parent=Merlin_244_exon;seqid=Merlin +Merlin GeneMark.hmm gene 133179 133835 -859.997228 - . ID=Merlin_245;seqid=Merlin +Merlin GeneMark.hmm mRNA 133179 133835 . - . ID=Merlin_245_mRNA;Parent=Merlin_245;seqid=Merlin +Merlin GeneMark.hmm exon 133179 133835 . - . ID=Merlin_245_exon;Parent=Merlin_245_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 133179 133835 . - 0 ID=Merlin_245_CDS;Parent=Merlin_245_exon;seqid=Merlin +Merlin GeneMark.hmm gene 133857 134663 -1049.900868 - . ID=Merlin_246;seqid=Merlin +Merlin GeneMark.hmm mRNA 133857 134663 . - . ID=Merlin_246_mRNA;Parent=Merlin_246;seqid=Merlin +Merlin GeneMark.hmm exon 133857 134663 . - . ID=Merlin_246_exon;Parent=Merlin_246_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 133857 134663 . - 0 ID=Merlin_246_CDS;Parent=Merlin_246_exon;seqid=Merlin +Merlin GeneMark.hmm gene 134693 137068 -3033.417419 - . ID=Merlin_247;seqid=Merlin +Merlin GeneMark.hmm mRNA 134693 137068 . - . ID=Merlin_247_mRNA;Parent=Merlin_247;seqid=Merlin +Merlin GeneMark.hmm exon 134693 137068 . - . ID=Merlin_247_exon;Parent=Merlin_247_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 134693 137068 . - 0 ID=Merlin_247_CDS;Parent=Merlin_247_exon;seqid=Merlin +Merlin GeneMark.hmm gene 137075 137734 -856.122084 - . ID=Merlin_248;seqid=Merlin +Merlin GeneMark.hmm mRNA 137075 137734 . - . ID=Merlin_248_mRNA;Parent=Merlin_248;seqid=Merlin +Merlin GeneMark.hmm exon 137075 137734 . - . ID=Merlin_248_exon;Parent=Merlin_248_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 137075 137734 . - 0 ID=Merlin_248_CDS;Parent=Merlin_248_exon;seqid=Merlin +Merlin GeneMark.hmm gene 137787 138962 -1500.330086 - . ID=Merlin_249;seqid=Merlin +Merlin GeneMark.hmm mRNA 137787 138962 . - . ID=Merlin_249_mRNA;Parent=Merlin_249;seqid=Merlin +Merlin GeneMark.hmm exon 137787 138962 . - . ID=Merlin_249_exon;Parent=Merlin_249_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 137787 138962 . - 0 ID=Merlin_249_CDS;Parent=Merlin_249_exon;seqid=Merlin +Merlin GeneMark.hmm gene 138962 142759 -4791.853068 - . ID=Merlin_250;seqid=Merlin +Merlin GeneMark.hmm mRNA 138962 142759 . - . ID=Merlin_250_mRNA;Parent=Merlin_250;seqid=Merlin +Merlin GeneMark.hmm exon 138962 142759 . - . ID=Merlin_250_exon;Parent=Merlin_250_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 138962 142759 . - 0 ID=Merlin_250_CDS;Parent=Merlin_250_exon;seqid=Merlin +Merlin GeneMark.hmm gene 142827 143753 -1151.813807 + . ID=Merlin_251;seqid=Merlin +Merlin GeneMark.hmm mRNA 142827 143753 . + . ID=Merlin_251_mRNA;Parent=Merlin_251;seqid=Merlin +Merlin GeneMark.hmm exon 142827 143753 . + . ID=Merlin_251_exon;Parent=Merlin_251_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 142827 143753 . + 0 ID=Merlin_251_CDS;Parent=Merlin_251_exon;seqid=Merlin +Merlin GeneMark.hmm gene 143743 144030 -331.847936 + . ID=Merlin_252;seqid=Merlin +Merlin GeneMark.hmm mRNA 143743 144030 . + . ID=Merlin_252_mRNA;Parent=Merlin_252;seqid=Merlin +Merlin GeneMark.hmm exon 143743 144030 . + . ID=Merlin_252_exon;Parent=Merlin_252_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 143743 144030 . + 0 ID=Merlin_252_CDS;Parent=Merlin_252_exon;seqid=Merlin +Merlin GeneMark.hmm gene 144008 144304 -369.866491 + . ID=Merlin_253;seqid=Merlin +Merlin GeneMark.hmm mRNA 144008 144304 . + . ID=Merlin_253_mRNA;Parent=Merlin_253;seqid=Merlin +Merlin GeneMark.hmm exon 144008 144304 . + . ID=Merlin_253_exon;Parent=Merlin_253_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 144008 144304 . + 0 ID=Merlin_253_CDS;Parent=Merlin_253_exon;seqid=Merlin +Merlin GeneMark.hmm gene 144301 144954 -836.139828 + . ID=Merlin_254;seqid=Merlin +Merlin GeneMark.hmm mRNA 144301 144954 . + . ID=Merlin_254_mRNA;Parent=Merlin_254;seqid=Merlin +Merlin GeneMark.hmm exon 144301 144954 . + . ID=Merlin_254_exon;Parent=Merlin_254_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 144301 144954 . + 0 ID=Merlin_254_CDS;Parent=Merlin_254_exon;seqid=Merlin +Merlin GeneMark.hmm gene 144964 145875 -1124.370545 + . ID=Merlin_255;seqid=Merlin +Merlin GeneMark.hmm mRNA 144964 145875 . + . ID=Merlin_255_mRNA;Parent=Merlin_255;seqid=Merlin +Merlin GeneMark.hmm exon 144964 145875 . + . ID=Merlin_255_exon;Parent=Merlin_255_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 144964 145875 . + 0 ID=Merlin_255_CDS;Parent=Merlin_255_exon;seqid=Merlin +Merlin GeneMark.hmm gene 145979 146218 -290.192159 + . ID=Merlin_256;seqid=Merlin +Merlin GeneMark.hmm mRNA 145979 146218 . + . ID=Merlin_256_mRNA;Parent=Merlin_256;seqid=Merlin +Merlin GeneMark.hmm exon 145979 146218 . + . ID=Merlin_256_exon;Parent=Merlin_256_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 145979 146218 . + 0 ID=Merlin_256_CDS;Parent=Merlin_256_exon;seqid=Merlin +Merlin GeneMark.hmm gene 146253 146519 -322.908748 + . ID=Merlin_257;seqid=Merlin +Merlin GeneMark.hmm mRNA 146253 146519 . + . ID=Merlin_257_mRNA;Parent=Merlin_257;seqid=Merlin +Merlin GeneMark.hmm exon 146253 146519 . + . ID=Merlin_257_exon;Parent=Merlin_257_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 146253 146519 . + 0 ID=Merlin_257_CDS;Parent=Merlin_257_exon;seqid=Merlin +Merlin GeneMark.hmm gene 146520 146744 -274.376507 + . ID=Merlin_258;seqid=Merlin +Merlin GeneMark.hmm mRNA 146520 146744 . + . ID=Merlin_258_mRNA;Parent=Merlin_258;seqid=Merlin +Merlin GeneMark.hmm exon 146520 146744 . + . ID=Merlin_258_exon;Parent=Merlin_258_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 146520 146744 . + 0 ID=Merlin_258_CDS;Parent=Merlin_258_exon;seqid=Merlin +Merlin GeneMark.hmm gene 146825 147040 -255.288456 + . ID=Merlin_259;seqid=Merlin +Merlin GeneMark.hmm mRNA 146825 147040 . + . ID=Merlin_259_mRNA;Parent=Merlin_259;seqid=Merlin +Merlin GeneMark.hmm exon 146825 147040 . + . ID=Merlin_259_exon;Parent=Merlin_259_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 146825 147040 . + 0 ID=Merlin_259_CDS;Parent=Merlin_259_exon;seqid=Merlin +Merlin GeneMark.hmm gene 147054 147419 -449.354834 + . ID=Merlin_260;seqid=Merlin +Merlin GeneMark.hmm mRNA 147054 147419 . + . ID=Merlin_260_mRNA;Parent=Merlin_260;seqid=Merlin +Merlin GeneMark.hmm exon 147054 147419 . + . ID=Merlin_260_exon;Parent=Merlin_260_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 147054 147419 . + 0 ID=Merlin_260_CDS;Parent=Merlin_260_exon;seqid=Merlin +Merlin GeneMark.hmm gene 147477 147755 -346.840279 + . ID=Merlin_261;seqid=Merlin +Merlin GeneMark.hmm mRNA 147477 147755 . + . ID=Merlin_261_mRNA;Parent=Merlin_261;seqid=Merlin +Merlin GeneMark.hmm exon 147477 147755 . + . ID=Merlin_261_exon;Parent=Merlin_261_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 147477 147755 . + 0 ID=Merlin_261_CDS;Parent=Merlin_261_exon;seqid=Merlin +Merlin GeneMark.hmm gene 147755 148078 -405.900125 + . ID=Merlin_262;seqid=Merlin +Merlin GeneMark.hmm mRNA 147755 148078 . + . ID=Merlin_262_mRNA;Parent=Merlin_262;seqid=Merlin +Merlin GeneMark.hmm exon 147755 148078 . + . ID=Merlin_262_exon;Parent=Merlin_262_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 147755 148078 . + 0 ID=Merlin_262_CDS;Parent=Merlin_262_exon;seqid=Merlin +Merlin GeneMark.hmm gene 148078 148293 -271.597843 + . ID=Merlin_263;seqid=Merlin +Merlin GeneMark.hmm mRNA 148078 148293 . + . ID=Merlin_263_mRNA;Parent=Merlin_263;seqid=Merlin +Merlin GeneMark.hmm exon 148078 148293 . + . ID=Merlin_263_exon;Parent=Merlin_263_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 148078 148293 . + 0 ID=Merlin_263_CDS;Parent=Merlin_263_exon;seqid=Merlin +Merlin GeneMark.hmm gene 148385 148636 -312.527190 + . ID=Merlin_264;seqid=Merlin +Merlin GeneMark.hmm mRNA 148385 148636 . + . ID=Merlin_264_mRNA;Parent=Merlin_264;seqid=Merlin +Merlin GeneMark.hmm exon 148385 148636 . + . ID=Merlin_264_exon;Parent=Merlin_264_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 148385 148636 . + 0 ID=Merlin_264_CDS;Parent=Merlin_264_exon;seqid=Merlin +Merlin GeneMark.hmm gene 148636 149229 -751.963856 + . ID=Merlin_265;seqid=Merlin +Merlin GeneMark.hmm mRNA 148636 149229 . + . ID=Merlin_265_mRNA;Parent=Merlin_265;seqid=Merlin +Merlin GeneMark.hmm exon 148636 149229 . + . ID=Merlin_265_exon;Parent=Merlin_265_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 148636 149229 . + 0 ID=Merlin_265_CDS;Parent=Merlin_265_exon;seqid=Merlin +Merlin GeneMark.hmm gene 149226 149555 -411.956487 + . ID=Merlin_266;seqid=Merlin +Merlin GeneMark.hmm mRNA 149226 149555 . + . ID=Merlin_266_mRNA;Parent=Merlin_266;seqid=Merlin +Merlin GeneMark.hmm exon 149226 149555 . + . ID=Merlin_266_exon;Parent=Merlin_266_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 149226 149555 . + 0 ID=Merlin_266_CDS;Parent=Merlin_266_exon;seqid=Merlin +Merlin GeneMark.hmm gene 149533 149880 -436.887846 + . ID=Merlin_267;seqid=Merlin +Merlin GeneMark.hmm mRNA 149533 149880 . + . ID=Merlin_267_mRNA;Parent=Merlin_267;seqid=Merlin +Merlin GeneMark.hmm exon 149533 149880 . + . ID=Merlin_267_exon;Parent=Merlin_267_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 149533 149880 . + 0 ID=Merlin_267_CDS;Parent=Merlin_267_exon;seqid=Merlin +Merlin GeneMark.hmm gene 149877 150737 -1096.070881 + . ID=Merlin_268;seqid=Merlin +Merlin GeneMark.hmm mRNA 149877 150737 . + . ID=Merlin_268_mRNA;Parent=Merlin_268;seqid=Merlin +Merlin GeneMark.hmm exon 149877 150737 . + . ID=Merlin_268_exon;Parent=Merlin_268_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 149877 150737 . + 0 ID=Merlin_268_CDS;Parent=Merlin_268_exon;seqid=Merlin +Merlin GeneMark.hmm gene 150734 150925 -235.875923 + . ID=Merlin_269;seqid=Merlin +Merlin GeneMark.hmm mRNA 150734 150925 . + . ID=Merlin_269_mRNA;Parent=Merlin_269;seqid=Merlin +Merlin GeneMark.hmm exon 150734 150925 . + . ID=Merlin_269_exon;Parent=Merlin_269_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 150734 150925 . + 0 ID=Merlin_269_CDS;Parent=Merlin_269_exon;seqid=Merlin +Merlin GeneMark.hmm gene 150922 151227 -402.602546 + . ID=Merlin_270;seqid=Merlin +Merlin GeneMark.hmm mRNA 150922 151227 . + . ID=Merlin_270_mRNA;Parent=Merlin_270;seqid=Merlin +Merlin GeneMark.hmm exon 150922 151227 . + . ID=Merlin_270_exon;Parent=Merlin_270_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 150922 151227 . + 0 ID=Merlin_270_CDS;Parent=Merlin_270_exon;seqid=Merlin +Merlin GeneMark.hmm gene 151218 153473 -2890.442885 + . ID=Merlin_271;seqid=Merlin +Merlin GeneMark.hmm mRNA 151218 153473 . + . ID=Merlin_271_mRNA;Parent=Merlin_271;seqid=Merlin +Merlin GeneMark.hmm exon 151218 153473 . + . ID=Merlin_271_exon;Parent=Merlin_271_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 151218 153473 . + 0 ID=Merlin_271_CDS;Parent=Merlin_271_exon;seqid=Merlin +Merlin GeneMark.hmm gene 153580 154722 -1440.286123 + . ID=Merlin_272;seqid=Merlin +Merlin GeneMark.hmm mRNA 153580 154722 . + . ID=Merlin_272_mRNA;Parent=Merlin_272;seqid=Merlin +Merlin GeneMark.hmm exon 153580 154722 . + . ID=Merlin_272_exon;Parent=Merlin_272_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 153580 154722 . + 0 ID=Merlin_272_CDS;Parent=Merlin_272_exon;seqid=Merlin +Merlin GeneMark.hmm gene 154749 155165 -537.328485 + . ID=Merlin_273;seqid=Merlin +Merlin GeneMark.hmm mRNA 154749 155165 . + . ID=Merlin_273_mRNA;Parent=Merlin_273;seqid=Merlin +Merlin GeneMark.hmm exon 154749 155165 . + . ID=Merlin_273_exon;Parent=Merlin_273_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 154749 155165 . + 0 ID=Merlin_273_CDS;Parent=Merlin_273_exon;seqid=Merlin +Merlin GeneMark.hmm gene 155162 155392 -284.548380 + . ID=Merlin_274;seqid=Merlin +Merlin GeneMark.hmm mRNA 155162 155392 . + . ID=Merlin_274_mRNA;Parent=Merlin_274;seqid=Merlin +Merlin GeneMark.hmm exon 155162 155392 . + . ID=Merlin_274_exon;Parent=Merlin_274_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 155162 155392 . + 0 ID=Merlin_274_CDS;Parent=Merlin_274_exon;seqid=Merlin +Merlin GeneMark.hmm gene 155392 156522 -1423.600588 + . ID=Merlin_275;seqid=Merlin +Merlin GeneMark.hmm mRNA 155392 156522 . + . ID=Merlin_275_mRNA;Parent=Merlin_275;seqid=Merlin +Merlin GeneMark.hmm exon 155392 156522 . + . ID=Merlin_275_exon;Parent=Merlin_275_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 155392 156522 . + 0 ID=Merlin_275_CDS;Parent=Merlin_275_exon;seqid=Merlin +Merlin GeneMark.hmm gene 156585 157088 -632.566444 + . ID=Merlin_276;seqid=Merlin +Merlin GeneMark.hmm mRNA 156585 157088 . + . ID=Merlin_276_mRNA;Parent=Merlin_276;seqid=Merlin +Merlin GeneMark.hmm exon 156585 157088 . + . ID=Merlin_276_exon;Parent=Merlin_276_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 156585 157088 . + 0 ID=Merlin_276_CDS;Parent=Merlin_276_exon;seqid=Merlin +Merlin GeneMark.hmm gene 157076 157432 -439.709209 + . ID=Merlin_277;seqid=Merlin +Merlin GeneMark.hmm mRNA 157076 157432 . + . ID=Merlin_277_mRNA;Parent=Merlin_277;seqid=Merlin +Merlin GeneMark.hmm exon 157076 157432 . + . ID=Merlin_277_exon;Parent=Merlin_277_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 157076 157432 . + 0 ID=Merlin_277_CDS;Parent=Merlin_277_exon;seqid=Merlin +Merlin GeneMark.hmm gene 157429 157734 -403.460144 + . ID=Merlin_278;seqid=Merlin +Merlin GeneMark.hmm mRNA 157429 157734 . + . ID=Merlin_278_mRNA;Parent=Merlin_278;seqid=Merlin +Merlin GeneMark.hmm exon 157429 157734 . + . ID=Merlin_278_exon;Parent=Merlin_278_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 157429 157734 . + 0 ID=Merlin_278_CDS;Parent=Merlin_278_exon;seqid=Merlin +Merlin GeneMark.hmm gene 157836 158312 -603.091441 + . ID=Merlin_279;seqid=Merlin +Merlin GeneMark.hmm mRNA 157836 158312 . + . ID=Merlin_279_mRNA;Parent=Merlin_279;seqid=Merlin +Merlin GeneMark.hmm exon 157836 158312 . + . ID=Merlin_279_exon;Parent=Merlin_279_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 157836 158312 . + 0 ID=Merlin_279_CDS;Parent=Merlin_279_exon;seqid=Merlin +Merlin GeneMark.hmm gene 158309 158668 -447.203441 + . ID=Merlin_280;seqid=Merlin +Merlin GeneMark.hmm mRNA 158309 158668 . + . ID=Merlin_280_mRNA;Parent=Merlin_280;seqid=Merlin +Merlin GeneMark.hmm exon 158309 158668 . + . ID=Merlin_280_exon;Parent=Merlin_280_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 158309 158668 . + 0 ID=Merlin_280_CDS;Parent=Merlin_280_exon;seqid=Merlin +Merlin GeneMark.hmm gene 158665 158838 -212.409539 + . ID=Merlin_281;seqid=Merlin +Merlin GeneMark.hmm mRNA 158665 158838 . + . ID=Merlin_281_mRNA;Parent=Merlin_281;seqid=Merlin +Merlin GeneMark.hmm exon 158665 158838 . + . ID=Merlin_281_exon;Parent=Merlin_281_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 158665 158838 . + 0 ID=Merlin_281_CDS;Parent=Merlin_281_exon;seqid=Merlin +Merlin GeneMark.hmm gene 158835 159731 -1132.126395 + . ID=Merlin_282;seqid=Merlin +Merlin GeneMark.hmm mRNA 158835 159731 . + . ID=Merlin_282_mRNA;Parent=Merlin_282;seqid=Merlin +Merlin GeneMark.hmm exon 158835 159731 . + . ID=Merlin_282_exon;Parent=Merlin_282_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 158835 159731 . + 0 ID=Merlin_282_CDS;Parent=Merlin_282_exon;seqid=Merlin +Merlin GeneMark.hmm gene 159731 159922 -235.781764 + . ID=Merlin_283;seqid=Merlin +Merlin GeneMark.hmm mRNA 159731 159922 . + . ID=Merlin_283_mRNA;Parent=Merlin_283;seqid=Merlin +Merlin GeneMark.hmm exon 159731 159922 . + . ID=Merlin_283_exon;Parent=Merlin_283_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 159731 159922 . + 0 ID=Merlin_283_CDS;Parent=Merlin_283_exon;seqid=Merlin +Merlin GeneMark.hmm gene 159922 160137 -267.519915 + . ID=Merlin_284;seqid=Merlin +Merlin GeneMark.hmm mRNA 159922 160137 . + . ID=Merlin_284_mRNA;Parent=Merlin_284;seqid=Merlin +Merlin GeneMark.hmm exon 159922 160137 . + . ID=Merlin_284_exon;Parent=Merlin_284_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 159922 160137 . + 0 ID=Merlin_284_CDS;Parent=Merlin_284_exon;seqid=Merlin +Merlin GeneMark.hmm gene 160137 160436 -372.267833 + . ID=Merlin_285;seqid=Merlin +Merlin GeneMark.hmm mRNA 160137 160436 . + . ID=Merlin_285_mRNA;Parent=Merlin_285;seqid=Merlin +Merlin GeneMark.hmm exon 160137 160436 . + . ID=Merlin_285_exon;Parent=Merlin_285_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 160137 160436 . + 0 ID=Merlin_285_CDS;Parent=Merlin_285_exon;seqid=Merlin +Merlin GeneMark.hmm gene 160414 160641 -289.957825 + . ID=Merlin_286;seqid=Merlin +Merlin GeneMark.hmm mRNA 160414 160641 . + . ID=Merlin_286_mRNA;Parent=Merlin_286;seqid=Merlin +Merlin GeneMark.hmm exon 160414 160641 . + . ID=Merlin_286_exon;Parent=Merlin_286_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 160414 160641 . + 0 ID=Merlin_286_CDS;Parent=Merlin_286_exon;seqid=Merlin +Merlin GeneMark.hmm gene 160638 160985 -435.855402 + . ID=Merlin_287;seqid=Merlin +Merlin GeneMark.hmm mRNA 160638 160985 . + . ID=Merlin_287_mRNA;Parent=Merlin_287;seqid=Merlin +Merlin GeneMark.hmm exon 160638 160985 . + . ID=Merlin_287_exon;Parent=Merlin_287_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 160638 160985 . + 0 ID=Merlin_287_CDS;Parent=Merlin_287_exon;seqid=Merlin +Merlin GeneMark.hmm gene 160986 161549 -716.263909 + . ID=Merlin_288;seqid=Merlin +Merlin GeneMark.hmm mRNA 160986 161549 . + . ID=Merlin_288_mRNA;Parent=Merlin_288;seqid=Merlin +Merlin GeneMark.hmm exon 160986 161549 . + . ID=Merlin_288_exon;Parent=Merlin_288_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 160986 161549 . + 0 ID=Merlin_288_CDS;Parent=Merlin_288_exon;seqid=Merlin +Merlin GeneMark.hmm gene 161546 161848 -371.966910 + . ID=Merlin_289;seqid=Merlin +Merlin GeneMark.hmm mRNA 161546 161848 . + . ID=Merlin_289_mRNA;Parent=Merlin_289;seqid=Merlin +Merlin GeneMark.hmm exon 161546 161848 . + . ID=Merlin_289_exon;Parent=Merlin_289_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 161546 161848 . + 0 ID=Merlin_289_CDS;Parent=Merlin_289_exon;seqid=Merlin +Merlin GeneMark.hmm gene 161845 162081 -287.849916 + . ID=Merlin_290;seqid=Merlin +Merlin GeneMark.hmm mRNA 161845 162081 . + . ID=Merlin_290_mRNA;Parent=Merlin_290;seqid=Merlin +Merlin GeneMark.hmm exon 161845 162081 . + . ID=Merlin_290_exon;Parent=Merlin_290_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 161845 162081 . + 0 ID=Merlin_290_CDS;Parent=Merlin_290_exon;seqid=Merlin +Merlin GeneMark.hmm gene 162074 162391 -387.962641 + . ID=Merlin_291;seqid=Merlin +Merlin GeneMark.hmm mRNA 162074 162391 . + . ID=Merlin_291_mRNA;Parent=Merlin_291;seqid=Merlin +Merlin GeneMark.hmm exon 162074 162391 . + . ID=Merlin_291_exon;Parent=Merlin_291_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 162074 162391 . + 0 ID=Merlin_291_CDS;Parent=Merlin_291_exon;seqid=Merlin +Merlin GeneMark.hmm gene 162449 162775 -406.965469 + . ID=Merlin_292;seqid=Merlin +Merlin GeneMark.hmm mRNA 162449 162775 . + . ID=Merlin_292_mRNA;Parent=Merlin_292;seqid=Merlin +Merlin GeneMark.hmm exon 162449 162775 . + . ID=Merlin_292_exon;Parent=Merlin_292_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 162449 162775 . + 0 ID=Merlin_292_CDS;Parent=Merlin_292_exon;seqid=Merlin +Merlin GeneMark.hmm gene 162905 163159 -321.120824 + . ID=Merlin_293;seqid=Merlin +Merlin GeneMark.hmm mRNA 162905 163159 . + . ID=Merlin_293_mRNA;Parent=Merlin_293;seqid=Merlin +Merlin GeneMark.hmm exon 162905 163159 . + . ID=Merlin_293_exon;Parent=Merlin_293_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 162905 163159 . + 0 ID=Merlin_293_CDS;Parent=Merlin_293_exon;seqid=Merlin +Merlin GeneMark.hmm gene 163465 163644 -217.336356 + . ID=Merlin_294;seqid=Merlin +Merlin GeneMark.hmm mRNA 163465 163644 . + . ID=Merlin_294_mRNA;Parent=Merlin_294;seqid=Merlin +Merlin GeneMark.hmm exon 163465 163644 . + . ID=Merlin_294_exon;Parent=Merlin_294_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 163465 163644 . + 0 ID=Merlin_294_CDS;Parent=Merlin_294_exon;seqid=Merlin +Merlin GeneMark.hmm gene 163764 164132 -441.864606 + . ID=Merlin_295;seqid=Merlin +Merlin GeneMark.hmm mRNA 163764 164132 . + . ID=Merlin_295_mRNA;Parent=Merlin_295;seqid=Merlin +Merlin GeneMark.hmm exon 163764 164132 . + . ID=Merlin_295_exon;Parent=Merlin_295_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 163764 164132 . + 0 ID=Merlin_295_CDS;Parent=Merlin_295_exon;seqid=Merlin +Merlin GeneMark.hmm gene 164158 164646 -602.734029 + . ID=Merlin_296;seqid=Merlin +Merlin GeneMark.hmm mRNA 164158 164646 . + . ID=Merlin_296_mRNA;Parent=Merlin_296;seqid=Merlin +Merlin GeneMark.hmm exon 164158 164646 . + . ID=Merlin_296_exon;Parent=Merlin_296_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 164158 164646 . + 0 ID=Merlin_296_CDS;Parent=Merlin_296_exon;seqid=Merlin +Merlin GeneMark.hmm gene 164715 165071 -451.064481 + . ID=Merlin_297;seqid=Merlin +Merlin GeneMark.hmm mRNA 164715 165071 . + . ID=Merlin_297_mRNA;Parent=Merlin_297;seqid=Merlin +Merlin GeneMark.hmm exon 164715 165071 . + . ID=Merlin_297_exon;Parent=Merlin_297_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 164715 165071 . + 0 ID=Merlin_297_CDS;Parent=Merlin_297_exon;seqid=Merlin +Merlin GeneMark.hmm gene 165107 165601 -618.360781 + . ID=Merlin_298;seqid=Merlin +Merlin GeneMark.hmm mRNA 165107 165601 . + . ID=Merlin_298_mRNA;Parent=Merlin_298;seqid=Merlin +Merlin GeneMark.hmm exon 165107 165601 . + . ID=Merlin_298_exon;Parent=Merlin_298_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 165107 165601 . + 0 ID=Merlin_298_CDS;Parent=Merlin_298_exon;seqid=Merlin +Merlin GeneMark.hmm gene 165612 165773 -191.091430 + . ID=Merlin_299;seqid=Merlin +Merlin GeneMark.hmm mRNA 165612 165773 . + . ID=Merlin_299_mRNA;Parent=Merlin_299;seqid=Merlin +Merlin GeneMark.hmm exon 165612 165773 . + . ID=Merlin_299_exon;Parent=Merlin_299_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 165612 165773 . + 0 ID=Merlin_299_CDS;Parent=Merlin_299_exon;seqid=Merlin +Merlin GeneMark.hmm gene 165770 166000 -285.030914 + . ID=Merlin_300;seqid=Merlin +Merlin GeneMark.hmm mRNA 165770 166000 . + . ID=Merlin_300_mRNA;Parent=Merlin_300;seqid=Merlin +Merlin GeneMark.hmm exon 165770 166000 . + . ID=Merlin_300_exon;Parent=Merlin_300_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 165770 166000 . + 0 ID=Merlin_300_CDS;Parent=Merlin_300_exon;seqid=Merlin +Merlin GeneMark.hmm gene 165997 166191 -241.609251 + . ID=Merlin_301;seqid=Merlin +Merlin GeneMark.hmm mRNA 165997 166191 . + . ID=Merlin_301_mRNA;Parent=Merlin_301;seqid=Merlin +Merlin GeneMark.hmm exon 165997 166191 . + . ID=Merlin_301_exon;Parent=Merlin_301_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 165997 166191 . + 0 ID=Merlin_301_CDS;Parent=Merlin_301_exon;seqid=Merlin +Merlin GeneMark.hmm gene 166352 167200 -1091.167753 + . ID=Merlin_302;seqid=Merlin +Merlin GeneMark.hmm mRNA 166352 167200 . + . ID=Merlin_302_mRNA;Parent=Merlin_302;seqid=Merlin +Merlin GeneMark.hmm exon 166352 167200 . + . ID=Merlin_302_exon;Parent=Merlin_302_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 166352 167200 . + 0 ID=Merlin_302_CDS;Parent=Merlin_302_exon;seqid=Merlin +Merlin GeneMark.hmm gene 167197 167433 -294.645060 + . ID=Merlin_303;seqid=Merlin +Merlin GeneMark.hmm mRNA 167197 167433 . + . ID=Merlin_303_mRNA;Parent=Merlin_303;seqid=Merlin +Merlin GeneMark.hmm exon 167197 167433 . + . ID=Merlin_303_exon;Parent=Merlin_303_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 167197 167433 . + 0 ID=Merlin_303_CDS;Parent=Merlin_303_exon;seqid=Merlin +Merlin GeneMark.hmm gene 167487 168944 -1811.170385 + . ID=Merlin_304;seqid=Merlin +Merlin GeneMark.hmm mRNA 167487 168944 . + . ID=Merlin_304_mRNA;Parent=Merlin_304;seqid=Merlin +Merlin GeneMark.hmm exon 167487 168944 . + . ID=Merlin_304_exon;Parent=Merlin_304_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 167487 168944 . + 0 ID=Merlin_304_CDS;Parent=Merlin_304_exon;seqid=Merlin +Merlin GeneMark.hmm gene 168941 169120 -220.159549 + . ID=Merlin_305;seqid=Merlin +Merlin GeneMark.hmm mRNA 168941 169120 . + . ID=Merlin_305_mRNA;Parent=Merlin_305;seqid=Merlin +Merlin GeneMark.hmm exon 168941 169120 . + . ID=Merlin_305_exon;Parent=Merlin_305_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 168941 169120 . + 0 ID=Merlin_305_CDS;Parent=Merlin_305_exon;seqid=Merlin +Merlin GeneMark.hmm gene 169175 171265 -2617.092758 + . ID=Merlin_306;seqid=Merlin +Merlin GeneMark.hmm mRNA 169175 171265 . + . ID=Merlin_306_mRNA;Parent=Merlin_306;seqid=Merlin +Merlin GeneMark.hmm exon 169175 171265 . + . ID=Merlin_306_exon;Parent=Merlin_306_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 169175 171265 . + 0 ID=Merlin_306_CDS;Parent=Merlin_306_exon;seqid=Merlin +Merlin GeneMark.hmm gene 171301 172788 -1876.322043 + . ID=Merlin_307;seqid=Merlin +Merlin GeneMark.hmm mRNA 171301 172788 . + . ID=Merlin_307_mRNA;Parent=Merlin_307;seqid=Merlin +Merlin GeneMark.hmm exon 171301 172788 . + . ID=Merlin_307_exon;Parent=Merlin_307_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 171301 172788 . + 0 ID=Merlin_307_CDS;Parent=Merlin_307_exon;seqid=Merlin
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gff3/merlin.gff Thu Mar 28 04:51:06 2024 +0000 @@ -0,0 +1,1230 @@ +##gff-version 3 +##sequence-region Merlin 1 172788 +Merlin GeneMark.hmm gene 2 691 -856.563659 + . ID=Merlin_1;seqid=Merlin +Merlin GeneMark.hmm mRNA 2 691 . + . ID=Merlin_1_mRNA;Parent=Merlin_1;seqid=Merlin;color=#00ff00 +Merlin GeneMark.hmm exon 2 691 . + . ID=Merlin_1_exon;Parent=Merlin_1_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 2 691 . + 0 ID=Merlin_1_CDS;Parent=Merlin_1_exon;seqid=Merlin +Merlin GeneMark.hmm gene 752 1039 -339.046618 + . ID=Merlin_2;seqid=Merlin +Merlin GeneMark.hmm mRNA 752 1039 . + . ID=Merlin_2_mRNA;Parent=Merlin_2;seqid=Merlin +Merlin GeneMark.hmm exon 752 1039 . + . ID=Merlin_2_exon;Parent=Merlin_2_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 752 1039 . + 0 ID=Merlin_2_CDS;Parent=Merlin_2_exon;seqid=Merlin +Merlin GeneMark.hmm gene 1067 2011 -1229.683915 - . ID=Merlin_3;seqid=Merlin +Merlin GeneMark.hmm mRNA 1067 2011 . - . ID=Merlin_3_mRNA;Parent=Merlin_3;seqid=Merlin +Merlin GeneMark.hmm exon 1067 2011 . - . ID=Merlin_3_exon;Parent=Merlin_3_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 1067 2011 . - 0 ID=Merlin_3_CDS;Parent=Merlin_3_exon;seqid=Merlin +Merlin GeneMark.hmm gene 2011 3066 -1335.034872 - . ID=Merlin_4;seqid=Merlin +Merlin GeneMark.hmm mRNA 2011 3066 . - . ID=Merlin_4_mRNA;Parent=Merlin_4;seqid=Merlin +Merlin GeneMark.hmm exon 2011 3066 . - . ID=Merlin_4_exon;Parent=Merlin_4_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 2011 3066 . - 0 ID=Merlin_4_CDS;Parent=Merlin_4_exon;seqid=Merlin +Merlin GeneMark.hmm gene 3066 4796 -2177.374893 - . ID=Merlin_5;seqid=Merlin +Merlin GeneMark.hmm mRNA 3066 4796 . - . ID=Merlin_5_mRNA;Parent=Merlin_5;seqid=Merlin +Merlin GeneMark.hmm exon 3066 4796 . - . ID=Merlin_5_exon;Parent=Merlin_5_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 3066 4796 . - 0 ID=Merlin_5_CDS;Parent=Merlin_5_exon;seqid=Merlin +Merlin GeneMark.hmm gene 4793 5317 -682.565030 - . ID=Merlin_6;seqid=Merlin +Merlin GeneMark.hmm mRNA 4793 5317 . - . ID=Merlin_6_mRNA;Parent=Merlin_6;seqid=Merlin +Merlin GeneMark.hmm exon 4793 5317 . - . ID=Merlin_6_exon;Parent=Merlin_6_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 4793 5317 . - 0 ID=Merlin_6_CDS;Parent=Merlin_6_exon;seqid=Merlin +Merlin GeneMark.hmm gene 5289 6431 -1457.525863 - . ID=Merlin_7;seqid=Merlin +Merlin GeneMark.hmm mRNA 5289 6431 . - . ID=Merlin_7_mRNA;Parent=Merlin_7;seqid=Merlin +Merlin GeneMark.hmm exon 5289 6431 . - . ID=Merlin_7_exon;Parent=Merlin_7_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 5289 6431 . - 0 ID=Merlin_7_CDS;Parent=Merlin_7_exon;seqid=Merlin +Merlin GeneMark.hmm gene 6428 7180 -968.015933 - . ID=Merlin_8;seqid=Merlin +Merlin GeneMark.hmm mRNA 6428 7180 . - . ID=Merlin_8_mRNA;Parent=Merlin_8;seqid=Merlin +Merlin GeneMark.hmm exon 6428 7180 . - . ID=Merlin_8_exon;Parent=Merlin_8_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 6428 7180 . - 0 ID=Merlin_8_CDS;Parent=Merlin_8_exon;seqid=Merlin +Merlin GeneMark.hmm gene 7228 7857 -809.330137 + . ID=Merlin_9;seqid=Merlin +Merlin GeneMark.hmm mRNA 7228 7857 . + . ID=Merlin_9_mRNA;Parent=Merlin_9;seqid=Merlin +Merlin GeneMark.hmm exon 7228 7857 . + . ID=Merlin_9_exon;Parent=Merlin_9_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 7228 7857 . + 0 ID=Merlin_9_CDS;Parent=Merlin_9_exon;seqid=Merlin +Merlin GeneMark.hmm gene 7857 8252 -515.006678 + . ID=Merlin_10;seqid=Merlin +Merlin GeneMark.hmm mRNA 7857 8252 . + . ID=Merlin_10_mRNA;Parent=Merlin_10;seqid=Merlin +Merlin GeneMark.hmm exon 7857 8252 . + . ID=Merlin_10_exon;Parent=Merlin_10_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 7857 8252 . + 0 ID=Merlin_10_CDS;Parent=Merlin_10_exon;seqid=Merlin +Merlin GeneMark.hmm gene 8340 8753 -522.529341 + . ID=Merlin_11;seqid=Merlin +Merlin GeneMark.hmm mRNA 8340 8753 . + . ID=Merlin_11_mRNA;Parent=Merlin_11;seqid=Merlin +Merlin GeneMark.hmm exon 8340 8753 . + . ID=Merlin_11_exon;Parent=Merlin_11_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 8340 8753 . + 0 ID=Merlin_11_CDS;Parent=Merlin_11_exon;seqid=Merlin +Merlin GeneMark.hmm gene 8787 8951 -212.019038 + . ID=Merlin_12;seqid=Merlin +Merlin GeneMark.hmm mRNA 8787 8951 . + . ID=Merlin_12_mRNA;Parent=Merlin_12;seqid=Merlin +Merlin GeneMark.hmm exon 8787 8951 . + . ID=Merlin_12_exon;Parent=Merlin_12_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 8787 8951 . + 0 ID=Merlin_12_CDS;Parent=Merlin_12_exon;seqid=Merlin +Merlin GeneMark.hmm gene 9014 9241 -274.669850 - . ID=Merlin_13;seqid=Merlin +Merlin GeneMark.hmm mRNA 9014 9241 . - . ID=Merlin_13_mRNA;Parent=Merlin_13;seqid=Merlin +Merlin GeneMark.hmm exon 9014 9241 . - . ID=Merlin_13_exon;Parent=Merlin_13_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 9014 9241 . - 0 ID=Merlin_13_CDS;Parent=Merlin_13_exon;seqid=Merlin +Merlin GeneMark.hmm gene 9248 10747 -1911.373457 - . ID=Merlin_14;seqid=Merlin +Merlin GeneMark.hmm mRNA 9248 10747 . - . ID=Merlin_14_mRNA;Parent=Merlin_14;seqid=Merlin +Merlin GeneMark.hmm exon 9248 10747 . - . ID=Merlin_14_exon;Parent=Merlin_14_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 9248 10747 . - 0 ID=Merlin_14_CDS;Parent=Merlin_14_exon;seqid=Merlin +Merlin GeneMark.hmm gene 10800 11435 -778.108633 + . ID=Merlin_15;seqid=Merlin +Merlin GeneMark.hmm mRNA 10800 11435 . + . ID=Merlin_15_mRNA;Parent=Merlin_15;seqid=Merlin +Merlin GeneMark.hmm exon 10800 11435 . + . ID=Merlin_15_exon;Parent=Merlin_15_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 10800 11435 . + 0 ID=Merlin_15_CDS;Parent=Merlin_15_exon;seqid=Merlin +Merlin GeneMark.hmm gene 11469 12290 -1045.093825 + . ID=Merlin_16;seqid=Merlin +Merlin GeneMark.hmm mRNA 11469 12290 . + . ID=Merlin_16_mRNA;Parent=Merlin_16;seqid=Merlin +Merlin GeneMark.hmm exon 11469 12290 . + . ID=Merlin_16_exon;Parent=Merlin_16_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 11469 12290 . + 0 ID=Merlin_16_CDS;Parent=Merlin_16_exon;seqid=Merlin +Merlin GeneMark.hmm gene 12365 12601 -286.579590 + . ID=Merlin_17;seqid=Merlin +Merlin GeneMark.hmm mRNA 12365 12601 . + . ID=Merlin_17_mRNA;Parent=Merlin_17;seqid=Merlin +Merlin GeneMark.hmm exon 12365 12601 . + . ID=Merlin_17_exon;Parent=Merlin_17_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 12365 12601 . + 0 ID=Merlin_17_CDS;Parent=Merlin_17_exon;seqid=Merlin +Merlin GeneMark.hmm gene 12598 12951 -440.013978 + . ID=Merlin_18;seqid=Merlin +Merlin GeneMark.hmm mRNA 12598 12951 . + . ID=Merlin_18_mRNA;Parent=Merlin_18;seqid=Merlin +Merlin GeneMark.hmm exon 12598 12951 . + . ID=Merlin_18_exon;Parent=Merlin_18_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 12598 12951 . + 0 ID=Merlin_18_CDS;Parent=Merlin_18_exon;seqid=Merlin +Merlin GeneMark.hmm gene 13067 13330 -321.884922 + . ID=Merlin_19;seqid=Merlin +Merlin GeneMark.hmm mRNA 13067 13330 . + . ID=Merlin_19_mRNA;Parent=Merlin_19;seqid=Merlin +Merlin GeneMark.hmm exon 13067 13330 . + . ID=Merlin_19_exon;Parent=Merlin_19_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 13067 13330 . + 0 ID=Merlin_19_CDS;Parent=Merlin_19_exon;seqid=Merlin +Merlin GeneMark.hmm gene 13340 14341 -1253.644245 + . ID=Merlin_20;seqid=Merlin +Merlin GeneMark.hmm mRNA 13340 14341 . + . ID=Merlin_20_mRNA;Parent=Merlin_20;seqid=Merlin +Merlin GeneMark.hmm exon 13340 14341 . + . ID=Merlin_20_exon;Parent=Merlin_20_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 13340 14341 . + 0 ID=Merlin_20_CDS;Parent=Merlin_20_exon;seqid=Merlin +Merlin GeneMark.hmm gene 14320 14883 -740.935174 + . ID=Merlin_21;seqid=Merlin +Merlin GeneMark.hmm mRNA 14320 14883 . + . ID=Merlin_21_mRNA;Parent=Merlin_21;seqid=Merlin +Merlin GeneMark.hmm exon 14320 14883 . + . ID=Merlin_21_exon;Parent=Merlin_21_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 14320 14883 . + 0 ID=Merlin_21_CDS;Parent=Merlin_21_exon;seqid=Merlin +Merlin GeneMark.hmm gene 14911 16197 -1617.100759 - . ID=Merlin_22;seqid=Merlin +Merlin GeneMark.hmm mRNA 14911 16197 . - . ID=Merlin_22_mRNA;Parent=Merlin_22;seqid=Merlin +Merlin GeneMark.hmm exon 14911 16197 . - . ID=Merlin_22_exon;Parent=Merlin_22_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 14911 16197 . - 0 ID=Merlin_22_CDS;Parent=Merlin_22_exon;seqid=Merlin +Merlin GeneMark.hmm gene 16289 17836 -1947.052483 - . ID=Merlin_23;seqid=Merlin +Merlin GeneMark.hmm mRNA 16289 17836 . - . ID=Merlin_23_mRNA;Parent=Merlin_23;seqid=Merlin +Merlin GeneMark.hmm exon 16289 17836 . - . ID=Merlin_23_exon;Parent=Merlin_23_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 16289 17836 . - 0 ID=Merlin_23_CDS;Parent=Merlin_23_exon;seqid=Merlin +Merlin GeneMark.hmm gene 17858 18673 -991.849469 - . ID=Merlin_24;seqid=Merlin +Merlin GeneMark.hmm mRNA 17858 18673 . - . ID=Merlin_24_mRNA;Parent=Merlin_24;seqid=Merlin +Merlin GeneMark.hmm exon 17858 18673 . - . ID=Merlin_24_exon;Parent=Merlin_24_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 17858 18673 . - 0 ID=Merlin_24_CDS;Parent=Merlin_24_exon;seqid=Merlin +Merlin GeneMark.hmm gene 18707 19351 -821.724123 - . ID=Merlin_25;seqid=Merlin +Merlin GeneMark.hmm mRNA 18707 19351 . - . ID=Merlin_25_mRNA;Parent=Merlin_25;seqid=Merlin +Merlin GeneMark.hmm exon 18707 19351 . - . ID=Merlin_25_exon;Parent=Merlin_25_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 18707 19351 . - 0 ID=Merlin_25_CDS;Parent=Merlin_25_exon;seqid=Merlin +Merlin GeneMark.hmm gene 19351 19776 -538.184958 - . ID=Merlin_26;seqid=Merlin +Merlin GeneMark.hmm mRNA 19351 19776 . - . ID=Merlin_26_mRNA;Parent=Merlin_26;seqid=Merlin +Merlin GeneMark.hmm exon 19351 19776 . - . ID=Merlin_26_exon;Parent=Merlin_26_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 19351 19776 . - 0 ID=Merlin_26_CDS;Parent=Merlin_26_exon;seqid=Merlin +Merlin GeneMark.hmm gene 19776 19988 -255.987740 - . ID=Merlin_27;seqid=Merlin +Merlin GeneMark.hmm mRNA 19776 19988 . - . ID=Merlin_27_mRNA;Parent=Merlin_27;seqid=Merlin +Merlin GeneMark.hmm exon 19776 19988 . - . ID=Merlin_27_exon;Parent=Merlin_27_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 19776 19988 . - 0 ID=Merlin_27_CDS;Parent=Merlin_27_exon;seqid=Merlin +Merlin GeneMark.hmm gene 19988 21550 -1974.103338 - . ID=Merlin_28;seqid=Merlin +Merlin GeneMark.hmm mRNA 19988 21550 . - . ID=Merlin_28_mRNA;Parent=Merlin_28;seqid=Merlin +Merlin GeneMark.hmm exon 19988 21550 . - . ID=Merlin_28_exon;Parent=Merlin_28_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 19988 21550 . - 0 ID=Merlin_28_CDS;Parent=Merlin_28_exon;seqid=Merlin +Merlin GeneMark.hmm gene 21625 22116 -616.669463 - . ID=Merlin_29;seqid=Merlin +Merlin GeneMark.hmm mRNA 21625 22116 . - . ID=Merlin_29_mRNA;Parent=Merlin_29;seqid=Merlin +Merlin GeneMark.hmm exon 21625 22116 . - . ID=Merlin_29_exon;Parent=Merlin_29_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 21625 22116 . - 0 ID=Merlin_29_CDS;Parent=Merlin_29_exon;seqid=Merlin +Merlin GeneMark.hmm gene 22240 24216 -2488.948058 - . ID=Merlin_30;seqid=Merlin +Merlin GeneMark.hmm mRNA 22240 24216 . - . ID=Merlin_30_mRNA;Parent=Merlin_30;seqid=Merlin +Merlin GeneMark.hmm exon 22240 24216 . - . ID=Merlin_30_exon;Parent=Merlin_30_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 22240 24216 . - 0 ID=Merlin_30_CDS;Parent=Merlin_30_exon;seqid=Merlin +Merlin GeneMark.hmm gene 24250 26094 -2334.323049 - . ID=Merlin_31;seqid=Merlin +Merlin GeneMark.hmm mRNA 24250 26094 . - . ID=Merlin_31_mRNA;Parent=Merlin_31;seqid=Merlin +Merlin GeneMark.hmm exon 24250 26094 . - . ID=Merlin_31_exon;Parent=Merlin_31_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 24250 26094 . - 0 ID=Merlin_31_CDS;Parent=Merlin_31_exon;seqid=Merlin +Merlin GeneMark.hmm gene 26072 26569 -622.542092 - . ID=Merlin_32;seqid=Merlin +Merlin GeneMark.hmm mRNA 26072 26569 . - . ID=Merlin_32_mRNA;Parent=Merlin_32;seqid=Merlin +Merlin GeneMark.hmm exon 26072 26569 . - . ID=Merlin_32_exon;Parent=Merlin_32_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 26072 26569 . - 0 ID=Merlin_32_CDS;Parent=Merlin_32_exon;seqid=Merlin +Merlin GeneMark.hmm gene 26572 27390 -1062.517306 - . ID=Merlin_33;seqid=Merlin +Merlin GeneMark.hmm mRNA 26572 27390 . - . ID=Merlin_33_mRNA;Parent=Merlin_33;seqid=Merlin +Merlin GeneMark.hmm exon 26572 27390 . - . ID=Merlin_33_exon;Parent=Merlin_33_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 26572 27390 . - 0 ID=Merlin_33_CDS;Parent=Merlin_33_exon;seqid=Merlin +Merlin GeneMark.hmm gene 27434 28204 -971.349898 - . ID=Merlin_34;seqid=Merlin +Merlin GeneMark.hmm mRNA 27434 28204 . - . ID=Merlin_34_mRNA;Parent=Merlin_34;seqid=Merlin +Merlin GeneMark.hmm exon 27434 28204 . - . ID=Merlin_34_exon;Parent=Merlin_34_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 27434 28204 . - 0 ID=Merlin_34_CDS;Parent=Merlin_34_exon;seqid=Merlin +Merlin GeneMark.hmm gene 28201 29130 -1172.195550 - . ID=Merlin_35;seqid=Merlin +Merlin GeneMark.hmm mRNA 28201 29130 . - . ID=Merlin_35_mRNA;Parent=Merlin_35;seqid=Merlin +Merlin GeneMark.hmm exon 28201 29130 . - . ID=Merlin_35_exon;Parent=Merlin_35_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 28201 29130 . - 0 ID=Merlin_35_CDS;Parent=Merlin_35_exon;seqid=Merlin +Merlin GeneMark.hmm gene 29162 30553 -1754.882559 - . ID=Merlin_36;seqid=Merlin +Merlin GeneMark.hmm mRNA 29162 30553 . - . ID=Merlin_36_mRNA;Parent=Merlin_36;seqid=Merlin +Merlin GeneMark.hmm exon 29162 30553 . - . ID=Merlin_36_exon;Parent=Merlin_36_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 29162 30553 . - 0 ID=Merlin_36_CDS;Parent=Merlin_36_exon;seqid=Merlin +Merlin GeneMark.hmm gene 30564 31982 -1840.409176 - . ID=Merlin_37;seqid=Merlin +Merlin GeneMark.hmm mRNA 30564 31982 . - . ID=Merlin_37_mRNA;Parent=Merlin_37;seqid=Merlin +Merlin GeneMark.hmm exon 30564 31982 . - . ID=Merlin_37_exon;Parent=Merlin_37_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 30564 31982 . - 0 ID=Merlin_37_CDS;Parent=Merlin_37_exon;seqid=Merlin +Merlin GeneMark.hmm gene 31982 32632 -810.715921 - . ID=Merlin_38;seqid=Merlin +Merlin GeneMark.hmm mRNA 31982 32632 . - . ID=Merlin_38_mRNA;Parent=Merlin_38;seqid=Merlin +Merlin GeneMark.hmm exon 31982 32632 . - . ID=Merlin_38_exon;Parent=Merlin_38_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 31982 32632 . - 0 ID=Merlin_38_CDS;Parent=Merlin_38_exon;seqid=Merlin +Merlin GeneMark.hmm gene 32632 34437 -2286.512966 - . ID=Merlin_39;seqid=Merlin +Merlin GeneMark.hmm mRNA 32632 34437 . - . ID=Merlin_39_mRNA;Parent=Merlin_39;seqid=Merlin +Merlin GeneMark.hmm exon 32632 34437 . - . ID=Merlin_39_exon;Parent=Merlin_39_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 32632 34437 . - 0 ID=Merlin_39_CDS;Parent=Merlin_39_exon;seqid=Merlin +Merlin GeneMark.hmm gene 34434 35300 -1103.339440 - . ID=Merlin_40;seqid=Merlin +Merlin GeneMark.hmm mRNA 34434 35300 . - . ID=Merlin_40_mRNA;Parent=Merlin_40;seqid=Merlin +Merlin GeneMark.hmm exon 34434 35300 . - . ID=Merlin_40_exon;Parent=Merlin_40_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 34434 35300 . - 0 ID=Merlin_40_CDS;Parent=Merlin_40_exon;seqid=Merlin +Merlin GeneMark.hmm gene 35372 36385 -1286.607331 - . ID=Merlin_41;seqid=Merlin +Merlin GeneMark.hmm mRNA 35372 36385 . - . ID=Merlin_41_mRNA;Parent=Merlin_41;seqid=Merlin +Merlin GeneMark.hmm exon 35372 36385 . - . ID=Merlin_41_exon;Parent=Merlin_41_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 35372 36385 . - 0 ID=Merlin_41_CDS;Parent=Merlin_41_exon;seqid=Merlin +Merlin GeneMark.hmm gene 36378 39479 -3926.862479 - . ID=Merlin_42;seqid=Merlin +Merlin GeneMark.hmm mRNA 36378 39479 . - . ID=Merlin_42_mRNA;Parent=Merlin_42;seqid=Merlin +Merlin GeneMark.hmm exon 36378 39479 . - . ID=Merlin_42_exon;Parent=Merlin_42_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 36378 39479 . - 0 ID=Merlin_42_CDS;Parent=Merlin_42_exon;seqid=Merlin +Merlin GeneMark.hmm gene 39476 41416 -2421.657174 - . ID=Merlin_43;seqid=Merlin +Merlin GeneMark.hmm mRNA 39476 41416 . - . ID=Merlin_43_mRNA;Parent=Merlin_43;seqid=Merlin +Merlin GeneMark.hmm exon 39476 41416 . - . ID=Merlin_43_exon;Parent=Merlin_43_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 39476 41416 . - 0 ID=Merlin_43_CDS;Parent=Merlin_43_exon;seqid=Merlin +Merlin GeneMark.hmm gene 41416 41709 -381.858612 - . ID=Merlin_44;seqid=Merlin +Merlin GeneMark.hmm mRNA 41416 41709 . - . ID=Merlin_44_mRNA;Parent=Merlin_44;seqid=Merlin +Merlin GeneMark.hmm exon 41416 41709 . - . ID=Merlin_44_exon;Parent=Merlin_44_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 41416 41709 . - 0 ID=Merlin_44_CDS;Parent=Merlin_44_exon;seqid=Merlin +Merlin GeneMark.hmm gene 41709 42224 -673.160274 - . ID=Merlin_45;seqid=Merlin +Merlin GeneMark.hmm mRNA 41709 42224 . - . ID=Merlin_45_mRNA;Parent=Merlin_45;seqid=Merlin +Merlin GeneMark.hmm exon 41709 42224 . - . ID=Merlin_45_exon;Parent=Merlin_45_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 41709 42224 . - 0 ID=Merlin_45_CDS;Parent=Merlin_45_exon;seqid=Merlin +Merlin GeneMark.hmm gene 42224 43951 -2203.710381 - . ID=Merlin_46;seqid=Merlin +Merlin GeneMark.hmm mRNA 42224 43951 . - . ID=Merlin_46_mRNA;Parent=Merlin_46;seqid=Merlin +Merlin GeneMark.hmm exon 42224 43951 . - . ID=Merlin_46_exon;Parent=Merlin_46_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 42224 43951 . - 0 ID=Merlin_46_CDS;Parent=Merlin_46_exon;seqid=Merlin +Merlin GeneMark.hmm gene 43951 44526 -730.479121 - . ID=Merlin_47;seqid=Merlin +Merlin GeneMark.hmm mRNA 43951 44526 . - . ID=Merlin_47_mRNA;Parent=Merlin_47;seqid=Merlin +Merlin GeneMark.hmm exon 43951 44526 . - . ID=Merlin_47_exon;Parent=Merlin_47_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 43951 44526 . - 0 ID=Merlin_47_CDS;Parent=Merlin_47_exon;seqid=Merlin +Merlin GeneMark.hmm gene 44576 45025 -562.019925 + . ID=Merlin_48;seqid=Merlin +Merlin GeneMark.hmm mRNA 44576 45025 . + . ID=Merlin_48_mRNA;Parent=Merlin_48;seqid=Merlin +Merlin GeneMark.hmm exon 44576 45025 . + . ID=Merlin_48_exon;Parent=Merlin_48_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 44576 45025 . + 0 ID=Merlin_48_CDS;Parent=Merlin_48_exon;seqid=Merlin +Merlin GeneMark.hmm gene 45025 45855 -1066.702009 + . ID=Merlin_49;seqid=Merlin +Merlin GeneMark.hmm mRNA 45025 45855 . + . ID=Merlin_49_mRNA;Parent=Merlin_49;seqid=Merlin +Merlin GeneMark.hmm exon 45025 45855 . + . ID=Merlin_49_exon;Parent=Merlin_49_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 45025 45855 . + 0 ID=Merlin_49_CDS;Parent=Merlin_49_exon;seqid=Merlin +Merlin GeneMark.hmm gene 45940 46527 -776.360306 + . ID=Merlin_50;seqid=Merlin +Merlin GeneMark.hmm mRNA 45940 46527 . + . ID=Merlin_50_mRNA;Parent=Merlin_50;seqid=Merlin +Merlin GeneMark.hmm exon 45940 46527 . + . ID=Merlin_50_exon;Parent=Merlin_50_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 45940 46527 . + 0 ID=Merlin_50_CDS;Parent=Merlin_50_exon;seqid=Merlin +Merlin GeneMark.hmm gene 46527 47255 -921.088284 + . ID=Merlin_51;seqid=Merlin +Merlin GeneMark.hmm mRNA 46527 47255 . + . ID=Merlin_51_mRNA;Parent=Merlin_51;seqid=Merlin +Merlin GeneMark.hmm exon 46527 47255 . + . ID=Merlin_51_exon;Parent=Merlin_51_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 46527 47255 . + 0 ID=Merlin_51_CDS;Parent=Merlin_51_exon;seqid=Merlin +Merlin GeneMark.hmm gene 47252 47485 -286.785634 + . ID=Merlin_52;seqid=Merlin +Merlin GeneMark.hmm mRNA 47252 47485 . + . ID=Merlin_52_mRNA;Parent=Merlin_52;seqid=Merlin +Merlin GeneMark.hmm exon 47252 47485 . + . ID=Merlin_52_exon;Parent=Merlin_52_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 47252 47485 . + 0 ID=Merlin_52_CDS;Parent=Merlin_52_exon;seqid=Merlin +Merlin GeneMark.hmm gene 47485 47940 -595.997014 + . ID=Merlin_53;seqid=Merlin +Merlin GeneMark.hmm mRNA 47485 47940 . + . ID=Merlin_53_mRNA;Parent=Merlin_53;seqid=Merlin +Merlin GeneMark.hmm exon 47485 47940 . + . ID=Merlin_53_exon;Parent=Merlin_53_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 47485 47940 . + 0 ID=Merlin_53_CDS;Parent=Merlin_53_exon;seqid=Merlin +Merlin GeneMark.hmm gene 47937 48143 -259.350499 + . ID=Merlin_54;seqid=Merlin +Merlin GeneMark.hmm mRNA 47937 48143 . + . ID=Merlin_54_mRNA;Parent=Merlin_54;seqid=Merlin +Merlin GeneMark.hmm exon 47937 48143 . + . ID=Merlin_54_exon;Parent=Merlin_54_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 47937 48143 . + 0 ID=Merlin_54_CDS;Parent=Merlin_54_exon;seqid=Merlin +Merlin GeneMark.hmm gene 48140 48358 -277.240023 + . ID=Merlin_55;seqid=Merlin +Merlin GeneMark.hmm mRNA 48140 48358 . + . ID=Merlin_55_mRNA;Parent=Merlin_55;seqid=Merlin +Merlin GeneMark.hmm exon 48140 48358 . + . ID=Merlin_55_exon;Parent=Merlin_55_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 48140 48358 . + 0 ID=Merlin_55_CDS;Parent=Merlin_55_exon;seqid=Merlin +Merlin GeneMark.hmm gene 48418 48600 -230.583168 + . ID=Merlin_56;seqid=Merlin +Merlin GeneMark.hmm mRNA 48418 48600 . + . ID=Merlin_56_mRNA;Parent=Merlin_56;seqid=Merlin +Merlin GeneMark.hmm exon 48418 48600 . + . ID=Merlin_56_exon;Parent=Merlin_56_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 48418 48600 . + 0 ID=Merlin_56_CDS;Parent=Merlin_56_exon;seqid=Merlin +Merlin GeneMark.hmm gene 48584 48769 -232.687067 + . ID=Merlin_57;seqid=Merlin +Merlin GeneMark.hmm mRNA 48584 48769 . + . ID=Merlin_57_mRNA;Parent=Merlin_57;seqid=Merlin +Merlin GeneMark.hmm exon 48584 48769 . + . ID=Merlin_57_exon;Parent=Merlin_57_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 48584 48769 . + 0 ID=Merlin_57_CDS;Parent=Merlin_57_exon;seqid=Merlin +Merlin GeneMark.hmm gene 48826 49053 -288.143395 + . ID=Merlin_58;seqid=Merlin +Merlin GeneMark.hmm mRNA 48826 49053 . + . ID=Merlin_58_mRNA;Parent=Merlin_58;seqid=Merlin +Merlin GeneMark.hmm exon 48826 49053 . + . ID=Merlin_58_exon;Parent=Merlin_58_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 48826 49053 . + 0 ID=Merlin_58_CDS;Parent=Merlin_58_exon;seqid=Merlin +Merlin GeneMark.hmm gene 49076 49432 -449.304895 + . ID=Merlin_59;seqid=Merlin +Merlin GeneMark.hmm mRNA 49076 49432 . + . ID=Merlin_59_mRNA;Parent=Merlin_59;seqid=Merlin +Merlin GeneMark.hmm exon 49076 49432 . + . ID=Merlin_59_exon;Parent=Merlin_59_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 49076 49432 . + 0 ID=Merlin_59_CDS;Parent=Merlin_59_exon;seqid=Merlin +Merlin GeneMark.hmm gene 49844 50110 -322.091381 + . ID=Merlin_60;seqid=Merlin +Merlin GeneMark.hmm mRNA 49844 50110 . + . ID=Merlin_60_mRNA;Parent=Merlin_60;seqid=Merlin +Merlin GeneMark.hmm exon 49844 50110 . + . ID=Merlin_60_exon;Parent=Merlin_60_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 49844 50110 . + 0 ID=Merlin_60_CDS;Parent=Merlin_60_exon;seqid=Merlin +Merlin GeneMark.hmm gene 50983 51234 -301.882768 + . ID=Merlin_61;seqid=Merlin +Merlin GeneMark.hmm mRNA 50983 51234 . + . ID=Merlin_61_mRNA;Parent=Merlin_61;seqid=Merlin +Merlin GeneMark.hmm exon 50983 51234 . + . ID=Merlin_61_exon;Parent=Merlin_61_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 50983 51234 . + 0 ID=Merlin_61_CDS;Parent=Merlin_61_exon;seqid=Merlin +Merlin GeneMark.hmm gene 51596 51838 -304.801536 + . ID=Merlin_62;seqid=Merlin +Merlin GeneMark.hmm mRNA 51596 51838 . + . ID=Merlin_62_mRNA;Parent=Merlin_62;seqid=Merlin +Merlin GeneMark.hmm exon 51596 51838 . + . ID=Merlin_62_exon;Parent=Merlin_62_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 51596 51838 . + 0 ID=Merlin_62_CDS;Parent=Merlin_62_exon;seqid=Merlin +Merlin GeneMark.hmm gene 51835 52182 -434.777109 + . ID=Merlin_63;seqid=Merlin +Merlin GeneMark.hmm mRNA 51835 52182 . + . ID=Merlin_63_mRNA;Parent=Merlin_63;seqid=Merlin +Merlin GeneMark.hmm exon 51835 52182 . + . ID=Merlin_63_exon;Parent=Merlin_63_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 51835 52182 . + 0 ID=Merlin_63_CDS;Parent=Merlin_63_exon;seqid=Merlin +Merlin GeneMark.hmm gene 52175 52684 -629.023983 + . ID=Merlin_64;seqid=Merlin +Merlin GeneMark.hmm mRNA 52175 52684 . + . ID=Merlin_64_mRNA;Parent=Merlin_64;seqid=Merlin +Merlin GeneMark.hmm exon 52175 52684 . + . ID=Merlin_64_exon;Parent=Merlin_64_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 52175 52684 . + 0 ID=Merlin_64_CDS;Parent=Merlin_64_exon;seqid=Merlin +Merlin GeneMark.hmm gene 52681 52827 -183.076828 + . ID=Merlin_65;seqid=Merlin +Merlin GeneMark.hmm mRNA 52681 52827 . + . ID=Merlin_65_mRNA;Parent=Merlin_65;seqid=Merlin +Merlin GeneMark.hmm exon 52681 52827 . + . ID=Merlin_65_exon;Parent=Merlin_65_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 52681 52827 . + 0 ID=Merlin_65_CDS;Parent=Merlin_65_exon;seqid=Merlin +Merlin GeneMark.hmm gene 52806 53030 -287.687980 + . ID=Merlin_66;seqid=Merlin +Merlin GeneMark.hmm mRNA 52806 53030 . + . ID=Merlin_66_mRNA;Parent=Merlin_66;seqid=Merlin +Merlin GeneMark.hmm exon 52806 53030 . + . ID=Merlin_66_exon;Parent=Merlin_66_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 52806 53030 . + 0 ID=Merlin_66_CDS;Parent=Merlin_66_exon;seqid=Merlin +Merlin GeneMark.hmm gene 53032 53475 -570.370348 + . ID=Merlin_67;seqid=Merlin +Merlin GeneMark.hmm mRNA 53032 53475 . + . ID=Merlin_67_mRNA;Parent=Merlin_67;seqid=Merlin +Merlin GeneMark.hmm exon 53032 53475 . + . ID=Merlin_67_exon;Parent=Merlin_67_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 53032 53475 . + 0 ID=Merlin_67_CDS;Parent=Merlin_67_exon;seqid=Merlin +Merlin GeneMark.hmm gene 53647 54225 -757.038069 + . ID=Merlin_68;seqid=Merlin +Merlin GeneMark.hmm mRNA 53647 54225 . + . ID=Merlin_68_mRNA;Parent=Merlin_68;seqid=Merlin +Merlin GeneMark.hmm exon 53647 54225 . + . ID=Merlin_68_exon;Parent=Merlin_68_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 53647 54225 . + 0 ID=Merlin_68_CDS;Parent=Merlin_68_exon;seqid=Merlin +Merlin GeneMark.hmm gene 54316 54516 -236.842212 + . ID=Merlin_69;seqid=Merlin +Merlin GeneMark.hmm mRNA 54316 54516 . + . ID=Merlin_69_mRNA;Parent=Merlin_69;seqid=Merlin +Merlin GeneMark.hmm exon 54316 54516 . + . ID=Merlin_69_exon;Parent=Merlin_69_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 54316 54516 . + 0 ID=Merlin_69_CDS;Parent=Merlin_69_exon;seqid=Merlin +Merlin GeneMark.hmm gene 54569 55168 -748.986136 + . ID=Merlin_70;seqid=Merlin +Merlin GeneMark.hmm mRNA 54569 55168 . + . ID=Merlin_70_mRNA;Parent=Merlin_70;seqid=Merlin +Merlin GeneMark.hmm exon 54569 55168 . + . ID=Merlin_70_exon;Parent=Merlin_70_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 54569 55168 . + 0 ID=Merlin_70_CDS;Parent=Merlin_70_exon;seqid=Merlin +Merlin GeneMark.hmm gene 55216 55860 -813.197162 + . ID=Merlin_71;seqid=Merlin +Merlin GeneMark.hmm mRNA 55216 55860 . + . ID=Merlin_71_mRNA;Parent=Merlin_71;seqid=Merlin +Merlin GeneMark.hmm exon 55216 55860 . + . ID=Merlin_71_exon;Parent=Merlin_71_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 55216 55860 . + 0 ID=Merlin_71_CDS;Parent=Merlin_71_exon;seqid=Merlin +Merlin GeneMark.hmm gene 55857 56279 -536.845669 + . ID=Merlin_72;seqid=Merlin +Merlin GeneMark.hmm mRNA 55857 56279 . + . ID=Merlin_72_mRNA;Parent=Merlin_72;seqid=Merlin +Merlin GeneMark.hmm exon 55857 56279 . + . ID=Merlin_72_exon;Parent=Merlin_72_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 55857 56279 . + 0 ID=Merlin_72_CDS;Parent=Merlin_72_exon;seqid=Merlin +Merlin GeneMark.hmm gene 56276 56644 -463.468418 + . ID=Merlin_73;seqid=Merlin +Merlin GeneMark.hmm mRNA 56276 56644 . + . ID=Merlin_73_mRNA;Parent=Merlin_73;seqid=Merlin +Merlin GeneMark.hmm exon 56276 56644 . + . ID=Merlin_73_exon;Parent=Merlin_73_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 56276 56644 . + 0 ID=Merlin_73_CDS;Parent=Merlin_73_exon;seqid=Merlin +Merlin GeneMark.hmm gene 56634 56894 -313.595651 + . ID=Merlin_74;seqid=Merlin +Merlin GeneMark.hmm mRNA 56634 56894 . + . ID=Merlin_74_mRNA;Parent=Merlin_74;seqid=Merlin +Merlin GeneMark.hmm exon 56634 56894 . + . ID=Merlin_74_exon;Parent=Merlin_74_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 56634 56894 . + 0 ID=Merlin_74_CDS;Parent=Merlin_74_exon;seqid=Merlin +Merlin GeneMark.hmm gene 56894 57172 -343.261028 + . ID=Merlin_75;seqid=Merlin +Merlin GeneMark.hmm mRNA 56894 57172 . + . ID=Merlin_75_mRNA;Parent=Merlin_75;seqid=Merlin +Merlin GeneMark.hmm exon 56894 57172 . + . ID=Merlin_75_exon;Parent=Merlin_75_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 56894 57172 . + 0 ID=Merlin_75_CDS;Parent=Merlin_75_exon;seqid=Merlin +Merlin GeneMark.hmm gene 57182 57403 -269.950515 + . ID=Merlin_76;seqid=Merlin +Merlin GeneMark.hmm mRNA 57182 57403 . + . ID=Merlin_76_mRNA;Parent=Merlin_76;seqid=Merlin +Merlin GeneMark.hmm exon 57182 57403 . + . ID=Merlin_76_exon;Parent=Merlin_76_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 57182 57403 . + 0 ID=Merlin_76_CDS;Parent=Merlin_76_exon;seqid=Merlin +Merlin GeneMark.hmm gene 57499 57786 -373.177871 + . ID=Merlin_77;seqid=Merlin +Merlin GeneMark.hmm mRNA 57499 57786 . + . ID=Merlin_77_mRNA;Parent=Merlin_77;seqid=Merlin +Merlin GeneMark.hmm exon 57499 57786 . + . ID=Merlin_77_exon;Parent=Merlin_77_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 57499 57786 . + 0 ID=Merlin_77_CDS;Parent=Merlin_77_exon;seqid=Merlin +Merlin GeneMark.hmm gene 57777 58724 -1215.940307 + . ID=Merlin_78;seqid=Merlin +Merlin GeneMark.hmm mRNA 57777 58724 . + . ID=Merlin_78_mRNA;Parent=Merlin_78;seqid=Merlin +Merlin GeneMark.hmm exon 57777 58724 . + . ID=Merlin_78_exon;Parent=Merlin_78_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 57777 58724 . + 0 ID=Merlin_78_CDS;Parent=Merlin_78_exon;seqid=Merlin +Merlin GeneMark.hmm gene 58717 58857 -173.930421 + . ID=Merlin_79;seqid=Merlin +Merlin GeneMark.hmm mRNA 58717 58857 . + . ID=Merlin_79_mRNA;Parent=Merlin_79;seqid=Merlin +Merlin GeneMark.hmm exon 58717 58857 . + . ID=Merlin_79_exon;Parent=Merlin_79_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 58717 58857 . + 0 ID=Merlin_79_CDS;Parent=Merlin_79_exon;seqid=Merlin +Merlin GeneMark.hmm gene 58872 59561 -880.645375 + . ID=Merlin_80;seqid=Merlin +Merlin GeneMark.hmm mRNA 58872 59561 . + . ID=Merlin_80_mRNA;Parent=Merlin_80;seqid=Merlin +Merlin GeneMark.hmm exon 58872 59561 . + . ID=Merlin_80_exon;Parent=Merlin_80_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 58872 59561 . + 0 ID=Merlin_80_CDS;Parent=Merlin_80_exon;seqid=Merlin +Merlin GeneMark.hmm gene 59561 59899 -428.109831 + . ID=Merlin_81;seqid=Merlin +Merlin GeneMark.hmm mRNA 59561 59899 . + . ID=Merlin_81_mRNA;Parent=Merlin_81;seqid=Merlin +Merlin GeneMark.hmm exon 59561 59899 . + . ID=Merlin_81_exon;Parent=Merlin_81_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 59561 59899 . + 0 ID=Merlin_81_CDS;Parent=Merlin_81_exon;seqid=Merlin +Merlin GeneMark.hmm gene 59896 60144 -306.923987 + . ID=Merlin_82;seqid=Merlin +Merlin GeneMark.hmm mRNA 59896 60144 . + . ID=Merlin_82_mRNA;Parent=Merlin_82;seqid=Merlin +Merlin GeneMark.hmm exon 59896 60144 . + . ID=Merlin_82_exon;Parent=Merlin_82_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 59896 60144 . + 0 ID=Merlin_82_CDS;Parent=Merlin_82_exon;seqid=Merlin +Merlin GeneMark.hmm gene 60144 60386 -304.982653 + . ID=Merlin_83;seqid=Merlin +Merlin GeneMark.hmm mRNA 60144 60386 . + . ID=Merlin_83_mRNA;Parent=Merlin_83;seqid=Merlin +Merlin GeneMark.hmm exon 60144 60386 . + . ID=Merlin_83_exon;Parent=Merlin_83_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 60144 60386 . + 0 ID=Merlin_83_CDS;Parent=Merlin_83_exon;seqid=Merlin +Merlin GeneMark.hmm gene 60379 60840 -594.547870 + . ID=Merlin_84;seqid=Merlin +Merlin GeneMark.hmm mRNA 60379 60840 . + . ID=Merlin_84_mRNA;Parent=Merlin_84;seqid=Merlin +Merlin GeneMark.hmm exon 60379 60840 . + . ID=Merlin_84_exon;Parent=Merlin_84_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 60379 60840 . + 0 ID=Merlin_84_CDS;Parent=Merlin_84_exon;seqid=Merlin +Merlin GeneMark.hmm gene 60869 61369 -617.611500 + . ID=Merlin_85;seqid=Merlin +Merlin GeneMark.hmm mRNA 60869 61369 . + . ID=Merlin_85_mRNA;Parent=Merlin_85;seqid=Merlin +Merlin GeneMark.hmm exon 60869 61369 . + . ID=Merlin_85_exon;Parent=Merlin_85_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 60869 61369 . + 0 ID=Merlin_85_CDS;Parent=Merlin_85_exon;seqid=Merlin +Merlin GeneMark.hmm gene 61356 61703 -422.353181 + . ID=Merlin_86;seqid=Merlin +Merlin GeneMark.hmm mRNA 61356 61703 . + . ID=Merlin_86_mRNA;Parent=Merlin_86;seqid=Merlin +Merlin GeneMark.hmm exon 61356 61703 . + . ID=Merlin_86_exon;Parent=Merlin_86_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 61356 61703 . + 0 ID=Merlin_86_CDS;Parent=Merlin_86_exon;seqid=Merlin +Merlin GeneMark.hmm gene 61760 62167 -519.180141 + . ID=Merlin_87;seqid=Merlin +Merlin GeneMark.hmm mRNA 61760 62167 . + . ID=Merlin_87_mRNA;Parent=Merlin_87;seqid=Merlin +Merlin GeneMark.hmm exon 61760 62167 . + . ID=Merlin_87_exon;Parent=Merlin_87_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 61760 62167 . + 0 ID=Merlin_87_CDS;Parent=Merlin_87_exon;seqid=Merlin +Merlin GeneMark.hmm gene 62359 62889 -691.422401 + . ID=Merlin_88;seqid=Merlin +Merlin GeneMark.hmm mRNA 62359 62889 . + . ID=Merlin_88_mRNA;Parent=Merlin_88;seqid=Merlin +Merlin GeneMark.hmm exon 62359 62889 . + . ID=Merlin_88_exon;Parent=Merlin_88_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 62359 62889 . + 0 ID=Merlin_88_CDS;Parent=Merlin_88_exon;seqid=Merlin +Merlin GeneMark.hmm gene 62886 63131 -315.050979 + . ID=Merlin_89;seqid=Merlin +Merlin GeneMark.hmm mRNA 62886 63131 . + . ID=Merlin_89_mRNA;Parent=Merlin_89;seqid=Merlin +Merlin GeneMark.hmm exon 62886 63131 . + . ID=Merlin_89_exon;Parent=Merlin_89_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 62886 63131 . + 0 ID=Merlin_89_CDS;Parent=Merlin_89_exon;seqid=Merlin +Merlin GeneMark.hmm gene 63124 63435 -400.565460 + . ID=Merlin_90;seqid=Merlin +Merlin GeneMark.hmm mRNA 63124 63435 . + . ID=Merlin_90_mRNA;Parent=Merlin_90;seqid=Merlin +Merlin GeneMark.hmm exon 63124 63435 . + . ID=Merlin_90_exon;Parent=Merlin_90_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 63124 63435 . + 0 ID=Merlin_90_CDS;Parent=Merlin_90_exon;seqid=Merlin +Merlin GeneMark.hmm gene 63432 63710 -335.031911 + . ID=Merlin_91;seqid=Merlin +Merlin GeneMark.hmm mRNA 63432 63710 . + . ID=Merlin_91_mRNA;Parent=Merlin_91;seqid=Merlin +Merlin GeneMark.hmm exon 63432 63710 . + . ID=Merlin_91_exon;Parent=Merlin_91_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 63432 63710 . + 0 ID=Merlin_91_CDS;Parent=Merlin_91_exon;seqid=Merlin +Merlin GeneMark.hmm gene 63710 63883 -203.175066 + . ID=Merlin_92;seqid=Merlin +Merlin GeneMark.hmm mRNA 63710 63883 . + . ID=Merlin_92_mRNA;Parent=Merlin_92;seqid=Merlin +Merlin GeneMark.hmm exon 63710 63883 . + . ID=Merlin_92_exon;Parent=Merlin_92_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 63710 63883 . + 0 ID=Merlin_92_CDS;Parent=Merlin_92_exon;seqid=Merlin +Merlin GeneMark.hmm gene 63942 64406 -597.655245 + . ID=Merlin_93;seqid=Merlin +Merlin GeneMark.hmm mRNA 63942 64406 . + . ID=Merlin_93_mRNA;Parent=Merlin_93;seqid=Merlin +Merlin GeneMark.hmm exon 63942 64406 . + . ID=Merlin_93_exon;Parent=Merlin_93_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 63942 64406 . + 0 ID=Merlin_93_CDS;Parent=Merlin_93_exon;seqid=Merlin +Merlin GeneMark.hmm gene 64414 64962 -713.810677 + . ID=Merlin_94;seqid=Merlin +Merlin GeneMark.hmm mRNA 64414 64962 . + . ID=Merlin_94_mRNA;Parent=Merlin_94;seqid=Merlin +Merlin GeneMark.hmm exon 64414 64962 . + . ID=Merlin_94_exon;Parent=Merlin_94_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 64414 64962 . + 0 ID=Merlin_94_CDS;Parent=Merlin_94_exon;seqid=Merlin +Merlin GeneMark.hmm gene 64962 65282 -412.685055 + . ID=Merlin_95;seqid=Merlin +Merlin GeneMark.hmm mRNA 64962 65282 . + . ID=Merlin_95_mRNA;Parent=Merlin_95;seqid=Merlin +Merlin GeneMark.hmm exon 64962 65282 . + . ID=Merlin_95_exon;Parent=Merlin_95_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 64962 65282 . + 0 ID=Merlin_95_CDS;Parent=Merlin_95_exon;seqid=Merlin +Merlin GeneMark.hmm gene 65303 65683 -496.639498 + . ID=Merlin_96;seqid=Merlin +Merlin GeneMark.hmm mRNA 65303 65683 . + . ID=Merlin_96_mRNA;Parent=Merlin_96;seqid=Merlin +Merlin GeneMark.hmm exon 65303 65683 . + . ID=Merlin_96_exon;Parent=Merlin_96_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 65303 65683 . + 0 ID=Merlin_96_CDS;Parent=Merlin_96_exon;seqid=Merlin +Merlin GeneMark.hmm gene 65676 66128 -573.822848 + . ID=Merlin_97;seqid=Merlin +Merlin GeneMark.hmm mRNA 65676 66128 . + . ID=Merlin_97_mRNA;Parent=Merlin_97;seqid=Merlin +Merlin GeneMark.hmm exon 65676 66128 . + . ID=Merlin_97_exon;Parent=Merlin_97_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 65676 66128 . + 0 ID=Merlin_97_CDS;Parent=Merlin_97_exon;seqid=Merlin +Merlin GeneMark.hmm gene 66128 66337 -267.423513 + . ID=Merlin_98;seqid=Merlin +Merlin GeneMark.hmm mRNA 66128 66337 . + . ID=Merlin_98_mRNA;Parent=Merlin_98;seqid=Merlin +Merlin GeneMark.hmm exon 66128 66337 . + . ID=Merlin_98_exon;Parent=Merlin_98_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 66128 66337 . + 0 ID=Merlin_98_CDS;Parent=Merlin_98_exon;seqid=Merlin +Merlin GeneMark.hmm gene 66328 66507 -214.194539 + . ID=Merlin_99;seqid=Merlin +Merlin GeneMark.hmm mRNA 66328 66507 . + . ID=Merlin_99_mRNA;Parent=Merlin_99;seqid=Merlin +Merlin GeneMark.hmm exon 66328 66507 . + . ID=Merlin_99_exon;Parent=Merlin_99_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 66328 66507 . + 0 ID=Merlin_99_CDS;Parent=Merlin_99_exon;seqid=Merlin +Merlin GeneMark.hmm gene 66504 66683 -217.450578 + . ID=Merlin_100;seqid=Merlin +Merlin GeneMark.hmm mRNA 66504 66683 . + . ID=Merlin_100_mRNA;Parent=Merlin_100;seqid=Merlin +Merlin GeneMark.hmm exon 66504 66683 . + . ID=Merlin_100_exon;Parent=Merlin_100_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 66504 66683 . + 0 ID=Merlin_100_CDS;Parent=Merlin_100_exon;seqid=Merlin +Merlin GeneMark.hmm gene 66680 66871 -235.908196 + . ID=Merlin_101;seqid=Merlin +Merlin GeneMark.hmm mRNA 66680 66871 . + . ID=Merlin_101_mRNA;Parent=Merlin_101;seqid=Merlin +Merlin GeneMark.hmm exon 66680 66871 . + . ID=Merlin_101_exon;Parent=Merlin_101_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 66680 66871 . + 0 ID=Merlin_101_CDS;Parent=Merlin_101_exon;seqid=Merlin +Merlin GeneMark.hmm gene 66873 67058 -233.275820 + . ID=Merlin_102;seqid=Merlin +Merlin GeneMark.hmm mRNA 66873 67058 . + . ID=Merlin_102_mRNA;Parent=Merlin_102;seqid=Merlin +Merlin GeneMark.hmm exon 66873 67058 . + . ID=Merlin_102_exon;Parent=Merlin_102_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 66873 67058 . + 0 ID=Merlin_102_CDS;Parent=Merlin_102_exon;seqid=Merlin +Merlin GeneMark.hmm gene 67058 67267 -264.096823 + . ID=Merlin_103;seqid=Merlin +Merlin GeneMark.hmm mRNA 67058 67267 . + . ID=Merlin_103_mRNA;Parent=Merlin_103;seqid=Merlin +Merlin GeneMark.hmm exon 67058 67267 . + . ID=Merlin_103_exon;Parent=Merlin_103_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 67058 67267 . + 0 ID=Merlin_103_CDS;Parent=Merlin_103_exon;seqid=Merlin +Merlin GeneMark.hmm gene 67267 67845 -752.300357 + . ID=Merlin_104;seqid=Merlin +Merlin GeneMark.hmm mRNA 67267 67845 . + . ID=Merlin_104_mRNA;Parent=Merlin_104;seqid=Merlin +Merlin GeneMark.hmm exon 67267 67845 . + . ID=Merlin_104_exon;Parent=Merlin_104_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 67267 67845 . + 0 ID=Merlin_104_CDS;Parent=Merlin_104_exon;seqid=Merlin +Merlin GeneMark.hmm gene 67970 68128 -196.227328 + . ID=Merlin_105;seqid=Merlin +Merlin GeneMark.hmm mRNA 67970 68128 . + . ID=Merlin_105_mRNA;Parent=Merlin_105;seqid=Merlin +Merlin GeneMark.hmm exon 67970 68128 . + . ID=Merlin_105_exon;Parent=Merlin_105_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 67970 68128 . + 0 ID=Merlin_105_CDS;Parent=Merlin_105_exon;seqid=Merlin +Merlin GeneMark.hmm gene 68125 68280 -186.665512 + . ID=Merlin_106;seqid=Merlin +Merlin GeneMark.hmm mRNA 68125 68280 . + . ID=Merlin_106_mRNA;Parent=Merlin_106;seqid=Merlin +Merlin GeneMark.hmm exon 68125 68280 . + . ID=Merlin_106_exon;Parent=Merlin_106_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 68125 68280 . + 0 ID=Merlin_106_CDS;Parent=Merlin_106_exon;seqid=Merlin +Merlin GeneMark.hmm gene 68345 68728 -480.408576 + . ID=Merlin_107;seqid=Merlin +Merlin GeneMark.hmm mRNA 68345 68728 . + . ID=Merlin_107_mRNA;Parent=Merlin_107;seqid=Merlin +Merlin GeneMark.hmm exon 68345 68728 . + . ID=Merlin_107_exon;Parent=Merlin_107_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 68345 68728 . + 0 ID=Merlin_107_CDS;Parent=Merlin_107_exon;seqid=Merlin +Merlin GeneMark.hmm gene 68787 68999 -267.936260 + . ID=Merlin_108;seqid=Merlin +Merlin GeneMark.hmm mRNA 68787 68999 . + . ID=Merlin_108_mRNA;Parent=Merlin_108;seqid=Merlin +Merlin GeneMark.hmm exon 68787 68999 . + . ID=Merlin_108_exon;Parent=Merlin_108_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 68787 68999 . + 0 ID=Merlin_108_CDS;Parent=Merlin_108_exon;seqid=Merlin +Merlin GeneMark.hmm gene 69008 69295 -369.655354 + . ID=Merlin_109;seqid=Merlin +Merlin GeneMark.hmm mRNA 69008 69295 . + . ID=Merlin_109_mRNA;Parent=Merlin_109;seqid=Merlin +Merlin GeneMark.hmm exon 69008 69295 . + . ID=Merlin_109_exon;Parent=Merlin_109_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 69008 69295 . + 0 ID=Merlin_109_CDS;Parent=Merlin_109_exon;seqid=Merlin +Merlin GeneMark.hmm gene 69285 69668 -486.207714 + . ID=Merlin_110;seqid=Merlin +Merlin GeneMark.hmm mRNA 69285 69668 . + . ID=Merlin_110_mRNA;Parent=Merlin_110;seqid=Merlin +Merlin GeneMark.hmm exon 69285 69668 . + . ID=Merlin_110_exon;Parent=Merlin_110_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 69285 69668 . + 0 ID=Merlin_110_CDS;Parent=Merlin_110_exon;seqid=Merlin +Merlin GeneMark.hmm gene 69767 69862 -119.090489 + . ID=Merlin_111;seqid=Merlin +Merlin GeneMark.hmm mRNA 69767 69862 . + . ID=Merlin_111_mRNA;Parent=Merlin_111;seqid=Merlin +Merlin GeneMark.hmm exon 69767 69862 . + . ID=Merlin_111_exon;Parent=Merlin_111_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 69767 69862 . + 0 ID=Merlin_111_CDS;Parent=Merlin_111_exon;seqid=Merlin +Merlin GeneMark.hmm gene 69859 70023 -200.738602 + . ID=Merlin_112;seqid=Merlin +Merlin GeneMark.hmm mRNA 69859 70023 . + . ID=Merlin_112_mRNA;Parent=Merlin_112;seqid=Merlin +Merlin GeneMark.hmm exon 69859 70023 . + . ID=Merlin_112_exon;Parent=Merlin_112_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 69859 70023 . + 0 ID=Merlin_112_CDS;Parent=Merlin_112_exon;seqid=Merlin +Merlin GeneMark.hmm gene 70030 70263 -281.446786 + . ID=Merlin_113;seqid=Merlin +Merlin GeneMark.hmm mRNA 70030 70263 . + . ID=Merlin_113_mRNA;Parent=Merlin_113;seqid=Merlin +Merlin GeneMark.hmm exon 70030 70263 . + . ID=Merlin_113_exon;Parent=Merlin_113_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 70030 70263 . + 0 ID=Merlin_113_CDS;Parent=Merlin_113_exon;seqid=Merlin +Merlin GeneMark.hmm gene 70263 70520 -332.653168 + . ID=Merlin_114;seqid=Merlin +Merlin GeneMark.hmm mRNA 70263 70520 . + . ID=Merlin_114_mRNA;Parent=Merlin_114;seqid=Merlin +Merlin GeneMark.hmm exon 70263 70520 . + . ID=Merlin_114_exon;Parent=Merlin_114_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 70263 70520 . + 0 ID=Merlin_114_CDS;Parent=Merlin_114_exon;seqid=Merlin +Merlin GeneMark.hmm gene 70517 70780 -336.190173 + . ID=Merlin_115;seqid=Merlin +Merlin GeneMark.hmm mRNA 70517 70780 . + . ID=Merlin_115_mRNA;Parent=Merlin_115;seqid=Merlin +Merlin GeneMark.hmm exon 70517 70780 . + . ID=Merlin_115_exon;Parent=Merlin_115_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 70517 70780 . + 0 ID=Merlin_115_CDS;Parent=Merlin_115_exon;seqid=Merlin +Merlin GeneMark.hmm gene 70866 71102 -289.943350 + . ID=Merlin_116;seqid=Merlin +Merlin GeneMark.hmm mRNA 70866 71102 . + . ID=Merlin_116_mRNA;Parent=Merlin_116;seqid=Merlin +Merlin GeneMark.hmm exon 70866 71102 . + . ID=Merlin_116_exon;Parent=Merlin_116_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 70866 71102 . + 0 ID=Merlin_116_CDS;Parent=Merlin_116_exon;seqid=Merlin +Merlin GeneMark.hmm gene 71092 71571 -594.658724 + . ID=Merlin_117;seqid=Merlin +Merlin GeneMark.hmm mRNA 71092 71571 . + . ID=Merlin_117_mRNA;Parent=Merlin_117;seqid=Merlin +Merlin GeneMark.hmm exon 71092 71571 . + . ID=Merlin_117_exon;Parent=Merlin_117_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 71092 71571 . + 0 ID=Merlin_117_CDS;Parent=Merlin_117_exon;seqid=Merlin +Merlin GeneMark.hmm gene 71574 72116 -686.096724 + . ID=Merlin_118;seqid=Merlin +Merlin GeneMark.hmm mRNA 71574 72116 . + . ID=Merlin_118_mRNA;Parent=Merlin_118;seqid=Merlin +Merlin GeneMark.hmm exon 71574 72116 . + . ID=Merlin_118_exon;Parent=Merlin_118_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 71574 72116 . + 0 ID=Merlin_118_CDS;Parent=Merlin_118_exon;seqid=Merlin +Merlin GeneMark.hmm gene 72116 73126 -1269.074513 + . ID=Merlin_119;seqid=Merlin +Merlin GeneMark.hmm mRNA 72116 73126 . + . ID=Merlin_119_mRNA;Parent=Merlin_119;seqid=Merlin +Merlin GeneMark.hmm exon 72116 73126 . + . ID=Merlin_119_exon;Parent=Merlin_119_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 72116 73126 . + 0 ID=Merlin_119_CDS;Parent=Merlin_119_exon;seqid=Merlin +Merlin GeneMark.hmm gene 73123 73359 -314.305354 + . ID=Merlin_120;seqid=Merlin +Merlin GeneMark.hmm mRNA 73123 73359 . + . ID=Merlin_120_mRNA;Parent=Merlin_120;seqid=Merlin +Merlin GeneMark.hmm exon 73123 73359 . + . ID=Merlin_120_exon;Parent=Merlin_120_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 73123 73359 . + 0 ID=Merlin_120_CDS;Parent=Merlin_120_exon;seqid=Merlin +Merlin GeneMark.hmm gene 73461 73631 -201.815396 + . ID=Merlin_121;seqid=Merlin +Merlin GeneMark.hmm mRNA 73461 73631 . + . ID=Merlin_121_mRNA;Parent=Merlin_121;seqid=Merlin +Merlin GeneMark.hmm exon 73461 73631 . + . ID=Merlin_121_exon;Parent=Merlin_121_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 73461 73631 . + 0 ID=Merlin_121_CDS;Parent=Merlin_121_exon;seqid=Merlin +Merlin GeneMark.hmm gene 73721 74698 -1210.601194 + . ID=Merlin_122;seqid=Merlin +Merlin GeneMark.hmm mRNA 73721 74698 . + . ID=Merlin_122_mRNA;Parent=Merlin_122;seqid=Merlin +Merlin GeneMark.hmm exon 73721 74698 . + . ID=Merlin_122_exon;Parent=Merlin_122_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 73721 74698 . + 0 ID=Merlin_122_CDS;Parent=Merlin_122_exon;seqid=Merlin +Merlin GeneMark.hmm gene 74744 74893 -185.633773 + . ID=Merlin_123;seqid=Merlin +Merlin GeneMark.hmm mRNA 74744 74893 . + . ID=Merlin_123_mRNA;Parent=Merlin_123;seqid=Merlin +Merlin GeneMark.hmm exon 74744 74893 . + . ID=Merlin_123_exon;Parent=Merlin_123_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 74744 74893 . + 0 ID=Merlin_123_CDS;Parent=Merlin_123_exon;seqid=Merlin +Merlin GeneMark.hmm gene 74890 75141 -315.506963 + . ID=Merlin_124;seqid=Merlin +Merlin GeneMark.hmm mRNA 74890 75141 . + . ID=Merlin_124_mRNA;Parent=Merlin_124;seqid=Merlin +Merlin GeneMark.hmm exon 74890 75141 . + . ID=Merlin_124_exon;Parent=Merlin_124_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 74890 75141 . + 0 ID=Merlin_124_CDS;Parent=Merlin_124_exon;seqid=Merlin +Merlin GeneMark.hmm gene 75141 75602 -594.209518 + . ID=Merlin_125;seqid=Merlin +Merlin GeneMark.hmm mRNA 75141 75602 . + . ID=Merlin_125_mRNA;Parent=Merlin_125;seqid=Merlin +Merlin GeneMark.hmm exon 75141 75602 . + . ID=Merlin_125_exon;Parent=Merlin_125_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 75141 75602 . + 0 ID=Merlin_125_CDS;Parent=Merlin_125_exon;seqid=Merlin +Merlin GeneMark.hmm gene 75602 75865 -344.721707 + . ID=Merlin_126;seqid=Merlin +Merlin GeneMark.hmm mRNA 75602 75865 . + . ID=Merlin_126_mRNA;Parent=Merlin_126;seqid=Merlin +Merlin GeneMark.hmm exon 75602 75865 . + . ID=Merlin_126_exon;Parent=Merlin_126_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 75602 75865 . + 0 ID=Merlin_126_CDS;Parent=Merlin_126_exon;seqid=Merlin +Merlin GeneMark.hmm gene 75856 76044 -230.523164 + . ID=Merlin_127;seqid=Merlin +Merlin GeneMark.hmm mRNA 75856 76044 . + . ID=Merlin_127_mRNA;Parent=Merlin_127;seqid=Merlin +Merlin GeneMark.hmm exon 75856 76044 . + . ID=Merlin_127_exon;Parent=Merlin_127_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 75856 76044 . + 0 ID=Merlin_127_CDS;Parent=Merlin_127_exon;seqid=Merlin +Merlin GeneMark.hmm gene 76041 76367 -416.228479 + . ID=Merlin_128;seqid=Merlin +Merlin GeneMark.hmm mRNA 76041 76367 . + . ID=Merlin_128_mRNA;Parent=Merlin_128;seqid=Merlin +Merlin GeneMark.hmm exon 76041 76367 . + . ID=Merlin_128_exon;Parent=Merlin_128_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 76041 76367 . + 0 ID=Merlin_128_CDS;Parent=Merlin_128_exon;seqid=Merlin +Merlin GeneMark.hmm gene 76546 77334 -987.711287 + . ID=Merlin_129;seqid=Merlin +Merlin GeneMark.hmm mRNA 76546 77334 . + . ID=Merlin_129_mRNA;Parent=Merlin_129;seqid=Merlin +Merlin GeneMark.hmm exon 76546 77334 . + . ID=Merlin_129_exon;Parent=Merlin_129_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 76546 77334 . + 0 ID=Merlin_129_CDS;Parent=Merlin_129_exon;seqid=Merlin +Merlin GeneMark.hmm gene 77420 78424 -1261.524373 + . ID=Merlin_130;seqid=Merlin +Merlin GeneMark.hmm mRNA 77420 78424 . + . ID=Merlin_130_mRNA;Parent=Merlin_130;seqid=Merlin +Merlin GeneMark.hmm exon 77420 78424 . + . ID=Merlin_130_exon;Parent=Merlin_130_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 77420 78424 . + 0 ID=Merlin_130_CDS;Parent=Merlin_130_exon;seqid=Merlin +Merlin GeneMark.hmm gene 78417 78707 -360.350742 + . ID=Merlin_131;seqid=Merlin +Merlin GeneMark.hmm mRNA 78417 78707 . + . ID=Merlin_131_mRNA;Parent=Merlin_131;seqid=Merlin +Merlin GeneMark.hmm exon 78417 78707 . + . ID=Merlin_131_exon;Parent=Merlin_131_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 78417 78707 . + 0 ID=Merlin_131_CDS;Parent=Merlin_131_exon;seqid=Merlin +Merlin GeneMark.hmm gene 78704 79111 -518.845840 + . ID=Merlin_132;seqid=Merlin +Merlin GeneMark.hmm mRNA 78704 79111 . + . ID=Merlin_132_mRNA;Parent=Merlin_132;seqid=Merlin +Merlin GeneMark.hmm exon 78704 79111 . + . ID=Merlin_132_exon;Parent=Merlin_132_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 78704 79111 . + 0 ID=Merlin_132_CDS;Parent=Merlin_132_exon;seqid=Merlin +Merlin GeneMark.hmm gene 79111 79617 -613.282382 + . ID=Merlin_133;seqid=Merlin +Merlin GeneMark.hmm mRNA 79111 79617 . + . ID=Merlin_133_mRNA;Parent=Merlin_133;seqid=Merlin +Merlin GeneMark.hmm exon 79111 79617 . + . ID=Merlin_133_exon;Parent=Merlin_133_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 79111 79617 . + 0 ID=Merlin_133_CDS;Parent=Merlin_133_exon;seqid=Merlin +Merlin GeneMark.hmm gene 79614 79919 -369.305081 + . ID=Merlin_134;seqid=Merlin +Merlin GeneMark.hmm mRNA 79614 79919 . + . ID=Merlin_134_mRNA;Parent=Merlin_134;seqid=Merlin +Merlin GeneMark.hmm exon 79614 79919 . + . ID=Merlin_134_exon;Parent=Merlin_134_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 79614 79919 . + 0 ID=Merlin_134_CDS;Parent=Merlin_134_exon;seqid=Merlin +Merlin GeneMark.hmm gene 79933 80160 -288.575732 + . ID=Merlin_135;seqid=Merlin +Merlin GeneMark.hmm mRNA 79933 80160 . + . ID=Merlin_135_mRNA;Parent=Merlin_135;seqid=Merlin +Merlin GeneMark.hmm exon 79933 80160 . + . ID=Merlin_135_exon;Parent=Merlin_135_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 79933 80160 . + 0 ID=Merlin_135_CDS;Parent=Merlin_135_exon;seqid=Merlin +Merlin GeneMark.hmm gene 80154 80417 -324.958009 + . ID=Merlin_136;seqid=Merlin +Merlin GeneMark.hmm mRNA 80154 80417 . + . ID=Merlin_136_mRNA;Parent=Merlin_136;seqid=Merlin +Merlin GeneMark.hmm exon 80154 80417 . + . ID=Merlin_136_exon;Parent=Merlin_136_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 80154 80417 . + 0 ID=Merlin_136_CDS;Parent=Merlin_136_exon;seqid=Merlin +Merlin GeneMark.hmm gene 80414 80623 -254.916892 + . ID=Merlin_137;seqid=Merlin +Merlin GeneMark.hmm mRNA 80414 80623 . + . ID=Merlin_137_mRNA;Parent=Merlin_137;seqid=Merlin +Merlin GeneMark.hmm exon 80414 80623 . + . ID=Merlin_137_exon;Parent=Merlin_137_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 80414 80623 . + 0 ID=Merlin_137_CDS;Parent=Merlin_137_exon;seqid=Merlin +Merlin GeneMark.hmm gene 80620 80949 -405.138197 + . ID=Merlin_138;seqid=Merlin +Merlin GeneMark.hmm mRNA 80620 80949 . + . ID=Merlin_138_mRNA;Parent=Merlin_138;seqid=Merlin +Merlin GeneMark.hmm exon 80620 80949 . + . ID=Merlin_138_exon;Parent=Merlin_138_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 80620 80949 . + 0 ID=Merlin_138_CDS;Parent=Merlin_138_exon;seqid=Merlin +Merlin GeneMark.hmm gene 80939 81091 -189.705268 + . ID=Merlin_139;seqid=Merlin +Merlin GeneMark.hmm mRNA 80939 81091 . + . ID=Merlin_139_mRNA;Parent=Merlin_139;seqid=Merlin +Merlin GeneMark.hmm exon 80939 81091 . + . ID=Merlin_139_exon;Parent=Merlin_139_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 80939 81091 . + 0 ID=Merlin_139_CDS;Parent=Merlin_139_exon;seqid=Merlin +Merlin GeneMark.hmm gene 81088 81396 -379.041172 + . ID=Merlin_140;seqid=Merlin +Merlin GeneMark.hmm mRNA 81088 81396 . + . ID=Merlin_140_mRNA;Parent=Merlin_140;seqid=Merlin +Merlin GeneMark.hmm exon 81088 81396 . + . ID=Merlin_140_exon;Parent=Merlin_140_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 81088 81396 . + 0 ID=Merlin_140_CDS;Parent=Merlin_140_exon;seqid=Merlin +Merlin GeneMark.hmm gene 81381 81527 -178.904000 + . ID=Merlin_141;seqid=Merlin +Merlin GeneMark.hmm mRNA 81381 81527 . + . ID=Merlin_141_mRNA;Parent=Merlin_141;seqid=Merlin +Merlin GeneMark.hmm exon 81381 81527 . + . ID=Merlin_141_exon;Parent=Merlin_141_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 81381 81527 . + 0 ID=Merlin_141_CDS;Parent=Merlin_141_exon;seqid=Merlin +Merlin GeneMark.hmm gene 81511 81945 -531.842575 + . ID=Merlin_142;seqid=Merlin +Merlin GeneMark.hmm mRNA 81511 81945 . + . ID=Merlin_142_mRNA;Parent=Merlin_142;seqid=Merlin +Merlin GeneMark.hmm exon 81511 81945 . + . ID=Merlin_142_exon;Parent=Merlin_142_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 81511 81945 . + 0 ID=Merlin_142_CDS;Parent=Merlin_142_exon;seqid=Merlin +Merlin GeneMark.hmm gene 81945 82109 -200.193240 + . ID=Merlin_143;seqid=Merlin +Merlin GeneMark.hmm mRNA 81945 82109 . + . ID=Merlin_143_mRNA;Parent=Merlin_143;seqid=Merlin +Merlin GeneMark.hmm exon 81945 82109 . + . ID=Merlin_143_exon;Parent=Merlin_143_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 81945 82109 . + 0 ID=Merlin_143_CDS;Parent=Merlin_143_exon;seqid=Merlin +Merlin GeneMark.hmm gene 82145 82618 -597.711728 + . ID=Merlin_144;seqid=Merlin +Merlin GeneMark.hmm mRNA 82145 82618 . + . ID=Merlin_144_mRNA;Parent=Merlin_144;seqid=Merlin +Merlin GeneMark.hmm exon 82145 82618 . + . ID=Merlin_144_exon;Parent=Merlin_144_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 82145 82618 . + 0 ID=Merlin_144_CDS;Parent=Merlin_144_exon;seqid=Merlin +Merlin GeneMark.hmm gene 82615 84444 -2332.730592 + . ID=Merlin_145;seqid=Merlin +Merlin GeneMark.hmm mRNA 82615 84444 . + . ID=Merlin_145_mRNA;Parent=Merlin_145;seqid=Merlin +Merlin GeneMark.hmm exon 82615 84444 . + . ID=Merlin_145_exon;Parent=Merlin_145_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 82615 84444 . + 0 ID=Merlin_145_CDS;Parent=Merlin_145_exon;seqid=Merlin +Merlin GeneMark.hmm gene 84512 84928 -529.993287 + . ID=Merlin_146;seqid=Merlin +Merlin GeneMark.hmm mRNA 84512 84928 . + . ID=Merlin_146_mRNA;Parent=Merlin_146;seqid=Merlin +Merlin GeneMark.hmm exon 84512 84928 . + . ID=Merlin_146_exon;Parent=Merlin_146_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 84512 84928 . + 0 ID=Merlin_146_CDS;Parent=Merlin_146_exon;seqid=Merlin +Merlin GeneMark.hmm gene 85016 85309 -372.795932 + . ID=Merlin_147;seqid=Merlin +Merlin GeneMark.hmm mRNA 85016 85309 . + . ID=Merlin_147_mRNA;Parent=Merlin_147;seqid=Merlin +Merlin GeneMark.hmm exon 85016 85309 . + . ID=Merlin_147_exon;Parent=Merlin_147_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 85016 85309 . + 0 ID=Merlin_147_CDS;Parent=Merlin_147_exon;seqid=Merlin +Merlin GeneMark.hmm gene 85459 85722 -330.097448 + . ID=Merlin_148;seqid=Merlin +Merlin GeneMark.hmm mRNA 85459 85722 . + . ID=Merlin_148_mRNA;Parent=Merlin_148;seqid=Merlin +Merlin GeneMark.hmm exon 85459 85722 . + . ID=Merlin_148_exon;Parent=Merlin_148_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 85459 85722 . + 0 ID=Merlin_148_CDS;Parent=Merlin_148_exon;seqid=Merlin +Merlin GeneMark.hmm gene 85722 85910 -230.155567 + . ID=Merlin_149;seqid=Merlin +Merlin GeneMark.hmm mRNA 85722 85910 . + . ID=Merlin_149_mRNA;Parent=Merlin_149;seqid=Merlin +Merlin GeneMark.hmm exon 85722 85910 . + . ID=Merlin_149_exon;Parent=Merlin_149_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 85722 85910 . + 0 ID=Merlin_149_CDS;Parent=Merlin_149_exon;seqid=Merlin +Merlin GeneMark.hmm gene 85903 86166 -332.190142 + . ID=Merlin_150;seqid=Merlin +Merlin GeneMark.hmm mRNA 85903 86166 . + . ID=Merlin_150_mRNA;Parent=Merlin_150;seqid=Merlin +Merlin GeneMark.hmm exon 85903 86166 . + . ID=Merlin_150_exon;Parent=Merlin_150_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 85903 86166 . + 0 ID=Merlin_150_CDS;Parent=Merlin_150_exon;seqid=Merlin +Merlin GeneMark.hmm gene 86229 86555 -399.176919 + . ID=Merlin_151;seqid=Merlin +Merlin GeneMark.hmm mRNA 86229 86555 . + . ID=Merlin_151_mRNA;Parent=Merlin_151;seqid=Merlin +Merlin GeneMark.hmm exon 86229 86555 . + . ID=Merlin_151_exon;Parent=Merlin_151_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 86229 86555 . + 0 ID=Merlin_151_CDS;Parent=Merlin_151_exon;seqid=Merlin +Merlin GeneMark.hmm gene 86552 86833 -365.746982 + . ID=Merlin_152;seqid=Merlin +Merlin GeneMark.hmm mRNA 86552 86833 . + . ID=Merlin_152_mRNA;Parent=Merlin_152;seqid=Merlin +Merlin GeneMark.hmm exon 86552 86833 . + . ID=Merlin_152_exon;Parent=Merlin_152_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 86552 86833 . + 0 ID=Merlin_152_CDS;Parent=Merlin_152_exon;seqid=Merlin +Merlin GeneMark.hmm gene 86826 87074 -314.427851 + . ID=Merlin_153;seqid=Merlin +Merlin GeneMark.hmm mRNA 86826 87074 . + . ID=Merlin_153_mRNA;Parent=Merlin_153;seqid=Merlin +Merlin GeneMark.hmm exon 86826 87074 . + . ID=Merlin_153_exon;Parent=Merlin_153_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 86826 87074 . + 0 ID=Merlin_153_CDS;Parent=Merlin_153_exon;seqid=Merlin +Merlin GeneMark.hmm gene 87067 87291 -270.187122 + . ID=Merlin_154;seqid=Merlin +Merlin GeneMark.hmm mRNA 87067 87291 . + . ID=Merlin_154_mRNA;Parent=Merlin_154;seqid=Merlin +Merlin GeneMark.hmm exon 87067 87291 . + . ID=Merlin_154_exon;Parent=Merlin_154_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 87067 87291 . + 0 ID=Merlin_154_CDS;Parent=Merlin_154_exon;seqid=Merlin +Merlin GeneMark.hmm gene 87288 87548 -320.850170 + . ID=Merlin_155;seqid=Merlin +Merlin GeneMark.hmm mRNA 87288 87548 . + . ID=Merlin_155_mRNA;Parent=Merlin_155;seqid=Merlin +Merlin GeneMark.hmm exon 87288 87548 . + . ID=Merlin_155_exon;Parent=Merlin_155_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 87288 87548 . + 0 ID=Merlin_155_CDS;Parent=Merlin_155_exon;seqid=Merlin +Merlin GeneMark.hmm gene 87545 87838 -368.941897 + . ID=Merlin_156;seqid=Merlin +Merlin GeneMark.hmm mRNA 87545 87838 . + . ID=Merlin_156_mRNA;Parent=Merlin_156;seqid=Merlin +Merlin GeneMark.hmm exon 87545 87838 . + . ID=Merlin_156_exon;Parent=Merlin_156_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 87545 87838 . + 0 ID=Merlin_156_CDS;Parent=Merlin_156_exon;seqid=Merlin +Merlin GeneMark.hmm gene 87906 88445 -686.934268 + . ID=Merlin_157;seqid=Merlin +Merlin GeneMark.hmm mRNA 87906 88445 . + . ID=Merlin_157_mRNA;Parent=Merlin_157;seqid=Merlin +Merlin GeneMark.hmm exon 87906 88445 . + . ID=Merlin_157_exon;Parent=Merlin_157_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 87906 88445 . + 0 ID=Merlin_157_CDS;Parent=Merlin_157_exon;seqid=Merlin +Merlin GeneMark.hmm gene 88429 88656 -293.300141 + . ID=Merlin_158;seqid=Merlin +Merlin GeneMark.hmm mRNA 88429 88656 . + . ID=Merlin_158_mRNA;Parent=Merlin_158;seqid=Merlin +Merlin GeneMark.hmm exon 88429 88656 . + . ID=Merlin_158_exon;Parent=Merlin_158_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 88429 88656 . + 0 ID=Merlin_158_CDS;Parent=Merlin_158_exon;seqid=Merlin +Merlin GeneMark.hmm gene 88663 89031 -446.339761 + . ID=Merlin_159;seqid=Merlin +Merlin GeneMark.hmm mRNA 88663 89031 . + . ID=Merlin_159_mRNA;Parent=Merlin_159;seqid=Merlin +Merlin GeneMark.hmm exon 88663 89031 . + . ID=Merlin_159_exon;Parent=Merlin_159_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 88663 89031 . + 0 ID=Merlin_159_CDS;Parent=Merlin_159_exon;seqid=Merlin +Merlin GeneMark.hmm gene 89012 89221 -255.579886 + . ID=Merlin_160;seqid=Merlin +Merlin GeneMark.hmm mRNA 89012 89221 . + . ID=Merlin_160_mRNA;Parent=Merlin_160;seqid=Merlin +Merlin GeneMark.hmm exon 89012 89221 . + . ID=Merlin_160_exon;Parent=Merlin_160_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 89012 89221 . + 0 ID=Merlin_160_CDS;Parent=Merlin_160_exon;seqid=Merlin +Merlin GeneMark.hmm gene 89206 89394 -231.007880 + . ID=Merlin_161;seqid=Merlin +Merlin GeneMark.hmm mRNA 89206 89394 . + . ID=Merlin_161_mRNA;Parent=Merlin_161;seqid=Merlin +Merlin GeneMark.hmm exon 89206 89394 . + . ID=Merlin_161_exon;Parent=Merlin_161_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 89206 89394 . + 0 ID=Merlin_161_CDS;Parent=Merlin_161_exon;seqid=Merlin +Merlin GeneMark.hmm gene 89426 89764 -419.076718 + . ID=Merlin_162;seqid=Merlin +Merlin GeneMark.hmm mRNA 89426 89764 . + . ID=Merlin_162_mRNA;Parent=Merlin_162;seqid=Merlin +Merlin GeneMark.hmm exon 89426 89764 . + . ID=Merlin_162_exon;Parent=Merlin_162_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 89426 89764 . + 0 ID=Merlin_162_CDS;Parent=Merlin_162_exon;seqid=Merlin +Merlin GeneMark.hmm gene 89826 89969 -185.055842 + . ID=Merlin_163;seqid=Merlin +Merlin GeneMark.hmm mRNA 89826 89969 . + . ID=Merlin_163_mRNA;Parent=Merlin_163;seqid=Merlin +Merlin GeneMark.hmm exon 89826 89969 . + . ID=Merlin_163_exon;Parent=Merlin_163_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 89826 89969 . + 0 ID=Merlin_163_CDS;Parent=Merlin_163_exon;seqid=Merlin +Merlin GeneMark.hmm gene 89966 90988 -1312.043599 + . ID=Merlin_164;seqid=Merlin +Merlin GeneMark.hmm mRNA 89966 90988 . + . ID=Merlin_164_mRNA;Parent=Merlin_164;seqid=Merlin +Merlin GeneMark.hmm exon 89966 90988 . + . ID=Merlin_164_exon;Parent=Merlin_164_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 89966 90988 . + 0 ID=Merlin_164_CDS;Parent=Merlin_164_exon;seqid=Merlin +Merlin GeneMark.hmm gene 90985 91191 -254.724476 + . ID=Merlin_165;seqid=Merlin +Merlin GeneMark.hmm mRNA 90985 91191 . + . ID=Merlin_165_mRNA;Parent=Merlin_165;seqid=Merlin +Merlin GeneMark.hmm exon 90985 91191 . + . ID=Merlin_165_exon;Parent=Merlin_165_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 90985 91191 . + 0 ID=Merlin_165_CDS;Parent=Merlin_165_exon;seqid=Merlin +Merlin GeneMark.hmm gene 91188 92870 -2159.860384 + . ID=Merlin_166;seqid=Merlin +Merlin GeneMark.hmm mRNA 91188 92870 . + . ID=Merlin_166_mRNA;Parent=Merlin_166;seqid=Merlin +Merlin GeneMark.hmm exon 91188 92870 . + . ID=Merlin_166_exon;Parent=Merlin_166_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 91188 92870 . + 0 ID=Merlin_166_CDS;Parent=Merlin_166_exon;seqid=Merlin +Merlin GeneMark.hmm gene 92867 93058 -240.822321 + . ID=Merlin_167;seqid=Merlin +Merlin GeneMark.hmm mRNA 92867 93058 . + . ID=Merlin_167_mRNA;Parent=Merlin_167;seqid=Merlin +Merlin GeneMark.hmm exon 92867 93058 . + . ID=Merlin_167_exon;Parent=Merlin_167_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 92867 93058 . + 0 ID=Merlin_167_CDS;Parent=Merlin_167_exon;seqid=Merlin +Merlin GeneMark.hmm gene 93067 93450 -466.762497 + . ID=Merlin_168;seqid=Merlin +Merlin GeneMark.hmm mRNA 93067 93450 . + . ID=Merlin_168_mRNA;Parent=Merlin_168;seqid=Merlin +Merlin GeneMark.hmm exon 93067 93450 . + . ID=Merlin_168_exon;Parent=Merlin_168_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 93067 93450 . + 0 ID=Merlin_168_CDS;Parent=Merlin_168_exon;seqid=Merlin +Merlin GeneMark.hmm gene 93469 94155 -853.161656 + . ID=Merlin_169;seqid=Merlin +Merlin GeneMark.hmm mRNA 93469 94155 . + . ID=Merlin_169_mRNA;Parent=Merlin_169;seqid=Merlin +Merlin GeneMark.hmm exon 93469 94155 . + . ID=Merlin_169_exon;Parent=Merlin_169_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 93469 94155 . + 0 ID=Merlin_169_CDS;Parent=Merlin_169_exon;seqid=Merlin +Merlin GeneMark.hmm gene 94209 95174 -1219.402057 + . ID=Merlin_170;seqid=Merlin +Merlin GeneMark.hmm mRNA 94209 95174 . + . ID=Merlin_170_mRNA;Parent=Merlin_170;seqid=Merlin +Merlin GeneMark.hmm exon 94209 95174 . + . ID=Merlin_170_exon;Parent=Merlin_170_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 94209 95174 . + 0 ID=Merlin_170_CDS;Parent=Merlin_170_exon;seqid=Merlin +Merlin GeneMark.hmm gene 95174 95737 -724.605488 + . ID=Merlin_171;seqid=Merlin +Merlin GeneMark.hmm mRNA 95174 95737 . + . ID=Merlin_171_mRNA;Parent=Merlin_171;seqid=Merlin +Merlin GeneMark.hmm exon 95174 95737 . + . ID=Merlin_171_exon;Parent=Merlin_171_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 95174 95737 . + 0 ID=Merlin_171_CDS;Parent=Merlin_171_exon;seqid=Merlin +Merlin GeneMark.hmm gene 95731 96108 -464.835446 + . ID=Merlin_172;seqid=Merlin +Merlin GeneMark.hmm mRNA 95731 96108 . + . ID=Merlin_172_mRNA;Parent=Merlin_172;seqid=Merlin +Merlin GeneMark.hmm exon 95731 96108 . + . ID=Merlin_172_exon;Parent=Merlin_172_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 95731 96108 . + 0 ID=Merlin_172_CDS;Parent=Merlin_172_exon;seqid=Merlin +Merlin GeneMark.hmm gene 96110 96331 -276.260456 + . ID=Merlin_173;seqid=Merlin +Merlin GeneMark.hmm mRNA 96110 96331 . + . ID=Merlin_173_mRNA;Parent=Merlin_173;seqid=Merlin +Merlin GeneMark.hmm exon 96110 96331 . + . ID=Merlin_173_exon;Parent=Merlin_173_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 96110 96331 . + 0 ID=Merlin_173_CDS;Parent=Merlin_173_exon;seqid=Merlin +Merlin GeneMark.hmm gene 96426 99116 -3385.938661 + . ID=Merlin_174;seqid=Merlin +Merlin GeneMark.hmm mRNA 96426 99116 . + . ID=Merlin_174_mRNA;Parent=Merlin_174;seqid=Merlin +Merlin GeneMark.hmm exon 96426 99116 . + . ID=Merlin_174_exon;Parent=Merlin_174_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 96426 99116 . + 0 ID=Merlin_174_CDS;Parent=Merlin_174_exon;seqid=Merlin +Merlin GeneMark.hmm gene 99179 99418 -294.745409 + . ID=Merlin_175;seqid=Merlin +Merlin GeneMark.hmm mRNA 99179 99418 . + . ID=Merlin_175_mRNA;Parent=Merlin_175;seqid=Merlin +Merlin GeneMark.hmm exon 99179 99418 . + . ID=Merlin_175_exon;Parent=Merlin_175_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 99179 99418 . + 0 ID=Merlin_175_CDS;Parent=Merlin_175_exon;seqid=Merlin +Merlin GeneMark.hmm gene 99455 99895 -551.164186 + . ID=Merlin_176;seqid=Merlin +Merlin GeneMark.hmm mRNA 99455 99895 . + . ID=Merlin_176_mRNA;Parent=Merlin_176;seqid=Merlin +Merlin GeneMark.hmm exon 99455 99895 . + . ID=Merlin_176_exon;Parent=Merlin_176_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 99455 99895 . + 0 ID=Merlin_176_CDS;Parent=Merlin_176_exon;seqid=Merlin +Merlin GeneMark.hmm gene 99928 100140 -262.065624 + . ID=Merlin_177;seqid=Merlin +Merlin GeneMark.hmm mRNA 99928 100140 . + . ID=Merlin_177_mRNA;Parent=Merlin_177;seqid=Merlin +Merlin GeneMark.hmm exon 99928 100140 . + . ID=Merlin_177_exon;Parent=Merlin_177_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 99928 100140 . + 0 ID=Merlin_177_CDS;Parent=Merlin_177_exon;seqid=Merlin +Merlin GeneMark.hmm gene 100137 100877 -927.530517 + . ID=Merlin_178;seqid=Merlin +Merlin GeneMark.hmm mRNA 100137 100877 . + . ID=Merlin_178_mRNA;Parent=Merlin_178;seqid=Merlin +Merlin GeneMark.hmm exon 100137 100877 . + . ID=Merlin_178_exon;Parent=Merlin_178_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 100137 100877 . + 0 ID=Merlin_178_CDS;Parent=Merlin_178_exon;seqid=Merlin +Merlin GeneMark.hmm gene 100868 101704 -1058.313313 + . ID=Merlin_179;seqid=Merlin +Merlin GeneMark.hmm mRNA 100868 101704 . + . ID=Merlin_179_mRNA;Parent=Merlin_179;seqid=Merlin +Merlin GeneMark.hmm exon 100868 101704 . + . ID=Merlin_179_exon;Parent=Merlin_179_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 100868 101704 . + 0 ID=Merlin_179_CDS;Parent=Merlin_179_exon;seqid=Merlin +Merlin GeneMark.hmm gene 101701 102777 -1345.602625 + . ID=Merlin_180;seqid=Merlin +Merlin GeneMark.hmm mRNA 101701 102777 . + . ID=Merlin_180_mRNA;Parent=Merlin_180;seqid=Merlin +Merlin GeneMark.hmm exon 101701 102777 . + . ID=Merlin_180_exon;Parent=Merlin_180_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 101701 102777 . + 0 ID=Merlin_180_CDS;Parent=Merlin_180_exon;seqid=Merlin +Merlin GeneMark.hmm gene 102885 104072 -1483.608352 + . ID=Merlin_181;seqid=Merlin +Merlin GeneMark.hmm mRNA 102885 104072 . + . ID=Merlin_181_mRNA;Parent=Merlin_181;seqid=Merlin +Merlin GeneMark.hmm exon 102885 104072 . + . ID=Merlin_181_exon;Parent=Merlin_181_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 102885 104072 . + 0 ID=Merlin_181_CDS;Parent=Merlin_181_exon;seqid=Merlin +Merlin GeneMark.hmm gene 104072 104422 -451.869493 + . ID=Merlin_182;seqid=Merlin +Merlin GeneMark.hmm mRNA 104072 104422 . + . ID=Merlin_182_mRNA;Parent=Merlin_182;seqid=Merlin +Merlin GeneMark.hmm exon 104072 104422 . + . ID=Merlin_182_exon;Parent=Merlin_182_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 104072 104422 . + 0 ID=Merlin_182_CDS;Parent=Merlin_182_exon;seqid=Merlin +Merlin GeneMark.hmm gene 104500 105867 -1730.587045 + . ID=Merlin_183;seqid=Merlin +Merlin GeneMark.hmm mRNA 104500 105867 . + . ID=Merlin_183_mRNA;Parent=Merlin_183;seqid=Merlin +Merlin GeneMark.hmm exon 104500 105867 . + . ID=Merlin_183_exon;Parent=Merlin_183_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 104500 105867 . + 0 ID=Merlin_183_CDS;Parent=Merlin_183_exon;seqid=Merlin +Merlin GeneMark.hmm gene 105928 106209 -352.988779 + . ID=Merlin_184;seqid=Merlin +Merlin GeneMark.hmm mRNA 105928 106209 . + . ID=Merlin_184_mRNA;Parent=Merlin_184;seqid=Merlin +Merlin GeneMark.hmm exon 105928 106209 . + . ID=Merlin_184_exon;Parent=Merlin_184_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 105928 106209 . + 0 ID=Merlin_184_CDS;Parent=Merlin_184_exon;seqid=Merlin +Merlin GeneMark.hmm gene 106209 106487 -351.122469 + . ID=Merlin_185;seqid=Merlin +Merlin GeneMark.hmm mRNA 106209 106487 . + . ID=Merlin_185_mRNA;Parent=Merlin_185;seqid=Merlin +Merlin GeneMark.hmm exon 106209 106487 . + . ID=Merlin_185_exon;Parent=Merlin_185_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 106209 106487 . + 0 ID=Merlin_185_CDS;Parent=Merlin_185_exon;seqid=Merlin +Merlin GeneMark.hmm gene 106487 106684 -246.970187 + . ID=Merlin_186;seqid=Merlin +Merlin GeneMark.hmm mRNA 106487 106684 . + . ID=Merlin_186_mRNA;Parent=Merlin_186;seqid=Merlin +Merlin GeneMark.hmm exon 106487 106684 . + . ID=Merlin_186_exon;Parent=Merlin_186_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 106487 106684 . + 0 ID=Merlin_186_CDS;Parent=Merlin_186_exon;seqid=Merlin +Merlin GeneMark.hmm gene 106699 107163 -615.053890 + . ID=Merlin_187;seqid=Merlin +Merlin GeneMark.hmm mRNA 106699 107163 . + . ID=Merlin_187_mRNA;Parent=Merlin_187;seqid=Merlin +Merlin GeneMark.hmm exon 106699 107163 . + . ID=Merlin_187_exon;Parent=Merlin_187_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 106699 107163 . + 0 ID=Merlin_187_CDS;Parent=Merlin_187_exon;seqid=Merlin +Merlin GeneMark.hmm gene 107200 108225 -1324.566436 + . ID=Merlin_188;seqid=Merlin +Merlin GeneMark.hmm mRNA 107200 108225 . + . ID=Merlin_188_mRNA;Parent=Merlin_188;seqid=Merlin +Merlin GeneMark.hmm exon 107200 108225 . + . ID=Merlin_188_exon;Parent=Merlin_188_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 107200 108225 . + 0 ID=Merlin_188_CDS;Parent=Merlin_188_exon;seqid=Merlin +Merlin GeneMark.hmm gene 108222 108419 -244.299886 - . ID=Merlin_189;seqid=Merlin +Merlin GeneMark.hmm mRNA 108222 108419 . - . ID=Merlin_189_mRNA;Parent=Merlin_189;seqid=Merlin +Merlin GeneMark.hmm exon 108222 108419 . - . ID=Merlin_189_exon;Parent=Merlin_189_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 108222 108419 . - 0 ID=Merlin_189_CDS;Parent=Merlin_189_exon;seqid=Merlin +Merlin GeneMark.hmm gene 108443 108727 -361.722638 + . ID=Merlin_190;seqid=Merlin +Merlin GeneMark.hmm mRNA 108443 108727 . + . ID=Merlin_190_mRNA;Parent=Merlin_190;seqid=Merlin +Merlin GeneMark.hmm exon 108443 108727 . + . ID=Merlin_190_exon;Parent=Merlin_190_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 108443 108727 . + 0 ID=Merlin_190_CDS;Parent=Merlin_190_exon;seqid=Merlin +Merlin GeneMark.hmm gene 108746 109267 -660.122856 + . ID=Merlin_191;seqid=Merlin +Merlin GeneMark.hmm mRNA 108746 109267 . + . ID=Merlin_191_mRNA;Parent=Merlin_191;seqid=Merlin +Merlin GeneMark.hmm exon 108746 109267 . + . ID=Merlin_191_exon;Parent=Merlin_191_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 108746 109267 . + 0 ID=Merlin_191_CDS;Parent=Merlin_191_exon;seqid=Merlin +Merlin GeneMark.hmm gene 109283 109450 -207.369336 + . ID=Merlin_192;seqid=Merlin +Merlin GeneMark.hmm mRNA 109283 109450 . + . ID=Merlin_192_mRNA;Parent=Merlin_192;seqid=Merlin +Merlin GeneMark.hmm exon 109283 109450 . + . ID=Merlin_192_exon;Parent=Merlin_192_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 109283 109450 . + 0 ID=Merlin_192_CDS;Parent=Merlin_192_exon;seqid=Merlin +Merlin GeneMark.hmm gene 109463 109684 -282.485263 + . ID=Merlin_193;seqid=Merlin +Merlin GeneMark.hmm mRNA 109463 109684 . + . ID=Merlin_193_mRNA;Parent=Merlin_193;seqid=Merlin +Merlin GeneMark.hmm exon 109463 109684 . + . ID=Merlin_193_exon;Parent=Merlin_193_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 109463 109684 . + 0 ID=Merlin_193_CDS;Parent=Merlin_193_exon;seqid=Merlin +Merlin GeneMark.hmm gene 109681 109833 -188.437796 + . ID=Merlin_194;seqid=Merlin +Merlin GeneMark.hmm mRNA 109681 109833 . + . ID=Merlin_194_mRNA;Parent=Merlin_194;seqid=Merlin +Merlin GeneMark.hmm exon 109681 109833 . + . ID=Merlin_194_exon;Parent=Merlin_194_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 109681 109833 . + 0 ID=Merlin_194_CDS;Parent=Merlin_194_exon;seqid=Merlin +Merlin GeneMark.hmm gene 109868 110107 -300.363740 + . ID=Merlin_195;seqid=Merlin +Merlin GeneMark.hmm mRNA 109868 110107 . + . ID=Merlin_195_mRNA;Parent=Merlin_195;seqid=Merlin +Merlin GeneMark.hmm exon 109868 110107 . + . ID=Merlin_195_exon;Parent=Merlin_195_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 109868 110107 . + 0 ID=Merlin_195_CDS;Parent=Merlin_195_exon;seqid=Merlin +Merlin GeneMark.hmm gene 110187 110387 -242.566720 + . ID=Merlin_196;seqid=Merlin +Merlin GeneMark.hmm mRNA 110187 110387 . + . ID=Merlin_196_mRNA;Parent=Merlin_196;seqid=Merlin +Merlin GeneMark.hmm exon 110187 110387 . + . ID=Merlin_196_exon;Parent=Merlin_196_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 110187 110387 . + 0 ID=Merlin_196_CDS;Parent=Merlin_196_exon;seqid=Merlin +Merlin GeneMark.hmm gene 110384 110623 -295.174485 + . ID=Merlin_197;seqid=Merlin +Merlin GeneMark.hmm mRNA 110384 110623 . + . ID=Merlin_197_mRNA;Parent=Merlin_197;seqid=Merlin +Merlin GeneMark.hmm exon 110384 110623 . + . ID=Merlin_197_exon;Parent=Merlin_197_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 110384 110623 . + 0 ID=Merlin_197_CDS;Parent=Merlin_197_exon;seqid=Merlin +Merlin GeneMark.hmm gene 110620 111051 -544.978023 + . ID=Merlin_198;seqid=Merlin +Merlin GeneMark.hmm mRNA 110620 111051 . + . ID=Merlin_198_mRNA;Parent=Merlin_198;seqid=Merlin +Merlin GeneMark.hmm exon 110620 111051 . + . ID=Merlin_198_exon;Parent=Merlin_198_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 110620 111051 . + 0 ID=Merlin_198_CDS;Parent=Merlin_198_exon;seqid=Merlin +Merlin GeneMark.hmm gene 111101 111238 -161.794612 + . ID=Merlin_199;seqid=Merlin +Merlin GeneMark.hmm mRNA 111101 111238 . + . ID=Merlin_199_mRNA;Parent=Merlin_199;seqid=Merlin +Merlin GeneMark.hmm exon 111101 111238 . + . ID=Merlin_199_exon;Parent=Merlin_199_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 111101 111238 . + 0 ID=Merlin_199_CDS;Parent=Merlin_199_exon;seqid=Merlin +Merlin GeneMark.hmm gene 111213 111737 -670.599096 + . ID=Merlin_200;seqid=Merlin +Merlin GeneMark.hmm mRNA 111213 111737 . + . ID=Merlin_200_mRNA;Parent=Merlin_200;seqid=Merlin +Merlin GeneMark.hmm exon 111213 111737 . + . ID=Merlin_200_exon;Parent=Merlin_200_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 111213 111737 . + 0 ID=Merlin_200_CDS;Parent=Merlin_200_exon;seqid=Merlin +Merlin GeneMark.hmm gene 111737 111913 -223.231704 + . ID=Merlin_201;seqid=Merlin +Merlin GeneMark.hmm mRNA 111737 111913 . + . ID=Merlin_201_mRNA;Parent=Merlin_201;seqid=Merlin +Merlin GeneMark.hmm exon 111737 111913 . + . ID=Merlin_201_exon;Parent=Merlin_201_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 111737 111913 . + 0 ID=Merlin_201_CDS;Parent=Merlin_201_exon;seqid=Merlin +Merlin GeneMark.hmm gene 111973 112590 -802.696887 + . ID=Merlin_202;seqid=Merlin +Merlin GeneMark.hmm mRNA 111973 112590 . + . ID=Merlin_202_mRNA;Parent=Merlin_202;seqid=Merlin +Merlin GeneMark.hmm exon 111973 112590 . + . ID=Merlin_202_exon;Parent=Merlin_202_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 111973 112590 . + 0 ID=Merlin_202_CDS;Parent=Merlin_202_exon;seqid=Merlin +Merlin GeneMark.hmm gene 112676 113461 -994.252012 + . ID=Merlin_203;seqid=Merlin +Merlin GeneMark.hmm mRNA 112676 113461 . + . ID=Merlin_203_mRNA;Parent=Merlin_203;seqid=Merlin +Merlin GeneMark.hmm exon 112676 113461 . + . ID=Merlin_203_exon;Parent=Merlin_203_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 112676 113461 . + 0 ID=Merlin_203_CDS;Parent=Merlin_203_exon;seqid=Merlin +Merlin GeneMark.hmm gene 113461 113778 -389.300206 + . ID=Merlin_204;seqid=Merlin +Merlin GeneMark.hmm mRNA 113461 113778 . + . ID=Merlin_204_mRNA;Parent=Merlin_204;seqid=Merlin +Merlin GeneMark.hmm exon 113461 113778 . + . ID=Merlin_204_exon;Parent=Merlin_204_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 113461 113778 . + 0 ID=Merlin_204_CDS;Parent=Merlin_204_exon;seqid=Merlin +Merlin GeneMark.hmm gene 113787 115118 -1697.881894 + . ID=Merlin_205;seqid=Merlin +Merlin GeneMark.hmm mRNA 113787 115118 . + . ID=Merlin_205_mRNA;Parent=Merlin_205;seqid=Merlin +Merlin GeneMark.hmm exon 113787 115118 . + . ID=Merlin_205_exon;Parent=Merlin_205_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 113787 115118 . + 0 ID=Merlin_205_CDS;Parent=Merlin_205_exon;seqid=Merlin +Merlin GeneMark.hmm gene 115125 115355 -279.940476 + . ID=Merlin_206;seqid=Merlin +Merlin GeneMark.hmm mRNA 115125 115355 . + . ID=Merlin_206_mRNA;Parent=Merlin_206;seqid=Merlin +Merlin GeneMark.hmm exon 115125 115355 . + . ID=Merlin_206_exon;Parent=Merlin_206_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 115125 115355 . + 0 ID=Merlin_206_CDS;Parent=Merlin_206_exon;seqid=Merlin +Merlin GeneMark.hmm gene 115346 116038 -870.417189 + . ID=Merlin_207;seqid=Merlin +Merlin GeneMark.hmm mRNA 115346 116038 . + . ID=Merlin_207_mRNA;Parent=Merlin_207;seqid=Merlin +Merlin GeneMark.hmm exon 115346 116038 . + . ID=Merlin_207_exon;Parent=Merlin_207_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 115346 116038 . + 0 ID=Merlin_207_CDS;Parent=Merlin_207_exon;seqid=Merlin +Merlin GeneMark.hmm gene 116040 116453 -527.653367 + . ID=Merlin_208;seqid=Merlin +Merlin GeneMark.hmm mRNA 116040 116453 . + . ID=Merlin_208_mRNA;Parent=Merlin_208;seqid=Merlin +Merlin GeneMark.hmm exon 116040 116453 . + . ID=Merlin_208_exon;Parent=Merlin_208_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 116040 116453 . + 0 ID=Merlin_208_CDS;Parent=Merlin_208_exon;seqid=Merlin +Merlin GeneMark.hmm gene 116520 116714 -243.312871 + . ID=Merlin_209;seqid=Merlin +Merlin GeneMark.hmm mRNA 116520 116714 . + . ID=Merlin_209_mRNA;Parent=Merlin_209;seqid=Merlin +Merlin GeneMark.hmm exon 116520 116714 . + . ID=Merlin_209_exon;Parent=Merlin_209_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 116520 116714 . + 0 ID=Merlin_209_CDS;Parent=Merlin_209_exon;seqid=Merlin +Merlin GeneMark.hmm gene 116714 117190 -587.212745 + . ID=Merlin_210;seqid=Merlin +Merlin GeneMark.hmm mRNA 116714 117190 . + . ID=Merlin_210_mRNA;Parent=Merlin_210;seqid=Merlin +Merlin GeneMark.hmm exon 116714 117190 . + . ID=Merlin_210_exon;Parent=Merlin_210_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 116714 117190 . + 0 ID=Merlin_210_CDS;Parent=Merlin_210_exon;seqid=Merlin +Merlin GeneMark.hmm gene 117177 117371 -246.741774 + . ID=Merlin_211;seqid=Merlin +Merlin GeneMark.hmm mRNA 117177 117371 . + . ID=Merlin_211_mRNA;Parent=Merlin_211;seqid=Merlin +Merlin GeneMark.hmm exon 117177 117371 . + . ID=Merlin_211_exon;Parent=Merlin_211_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 117177 117371 . + 0 ID=Merlin_211_CDS;Parent=Merlin_211_exon;seqid=Merlin +Merlin GeneMark.hmm gene 117368 117844 -587.223837 + . ID=Merlin_212;seqid=Merlin +Merlin GeneMark.hmm mRNA 117368 117844 . + . ID=Merlin_212_mRNA;Parent=Merlin_212;seqid=Merlin +Merlin GeneMark.hmm exon 117368 117844 . + . ID=Merlin_212_exon;Parent=Merlin_212_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 117368 117844 . + 0 ID=Merlin_212_CDS;Parent=Merlin_212_exon;seqid=Merlin +Merlin GeneMark.hmm gene 117841 117939 -117.153787 + . ID=Merlin_213;seqid=Merlin +Merlin GeneMark.hmm mRNA 117841 117939 . + . ID=Merlin_213_mRNA;Parent=Merlin_213;seqid=Merlin +Merlin GeneMark.hmm exon 117841 117939 . + . ID=Merlin_213_exon;Parent=Merlin_213_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 117841 117939 . + 0 ID=Merlin_213_CDS;Parent=Merlin_213_exon;seqid=Merlin +Merlin GeneMark.hmm gene 117936 118187 -314.341261 + . ID=Merlin_214;seqid=Merlin +Merlin GeneMark.hmm mRNA 117936 118187 . + . ID=Merlin_214_mRNA;Parent=Merlin_214;seqid=Merlin +Merlin GeneMark.hmm exon 117936 118187 . + . ID=Merlin_214_exon;Parent=Merlin_214_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 117936 118187 . + 0 ID=Merlin_214_CDS;Parent=Merlin_214_exon;seqid=Merlin +Merlin GeneMark.hmm gene 118184 118411 -293.015141 + . ID=Merlin_215;seqid=Merlin +Merlin GeneMark.hmm mRNA 118184 118411 . + . ID=Merlin_215_mRNA;Parent=Merlin_215;seqid=Merlin +Merlin GeneMark.hmm exon 118184 118411 . + . ID=Merlin_215_exon;Parent=Merlin_215_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 118184 118411 . + 0 ID=Merlin_215_CDS;Parent=Merlin_215_exon;seqid=Merlin +Merlin GeneMark.hmm gene 118435 118818 -477.204459 + . ID=Merlin_216;seqid=Merlin +Merlin GeneMark.hmm mRNA 118435 118818 . + . ID=Merlin_216_mRNA;Parent=Merlin_216;seqid=Merlin +Merlin GeneMark.hmm exon 118435 118818 . + . ID=Merlin_216_exon;Parent=Merlin_216_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 118435 118818 . + 0 ID=Merlin_216_CDS;Parent=Merlin_216_exon;seqid=Merlin +Merlin GeneMark.hmm gene 118849 120690 -2259.486004 + . ID=Merlin_217;seqid=Merlin +Merlin GeneMark.hmm mRNA 118849 120690 . + . ID=Merlin_217_mRNA;Parent=Merlin_217;seqid=Merlin +Merlin GeneMark.hmm exon 118849 120690 . + . ID=Merlin_217_exon;Parent=Merlin_217_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 118849 120690 . + 0 ID=Merlin_217_CDS;Parent=Merlin_217_exon;seqid=Merlin +Merlin GeneMark.hmm gene 120730 120885 -200.778885 + . ID=Merlin_218;seqid=Merlin +Merlin GeneMark.hmm mRNA 120730 120885 . + . ID=Merlin_218_mRNA;Parent=Merlin_218;seqid=Merlin +Merlin GeneMark.hmm exon 120730 120885 . + . ID=Merlin_218_exon;Parent=Merlin_218_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 120730 120885 . + 0 ID=Merlin_218_CDS;Parent=Merlin_218_exon;seqid=Merlin +Merlin GeneMark.hmm gene 120929 121213 -363.032822 + . ID=Merlin_219;seqid=Merlin +Merlin GeneMark.hmm mRNA 120929 121213 . + . ID=Merlin_219_mRNA;Parent=Merlin_219;seqid=Merlin +Merlin GeneMark.hmm exon 120929 121213 . + . ID=Merlin_219_exon;Parent=Merlin_219_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 120929 121213 . + 0 ID=Merlin_219_CDS;Parent=Merlin_219_exon;seqid=Merlin +Merlin GeneMark.hmm gene 121200 121400 -244.392369 + . ID=Merlin_220;seqid=Merlin +Merlin GeneMark.hmm mRNA 121200 121400 . + . ID=Merlin_220_mRNA;Parent=Merlin_220;seqid=Merlin +Merlin GeneMark.hmm exon 121200 121400 . + . ID=Merlin_220_exon;Parent=Merlin_220_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 121200 121400 . + 0 ID=Merlin_220_CDS;Parent=Merlin_220_exon;seqid=Merlin +Merlin GeneMark.hmm gene 121411 123588 -2750.112191 + . ID=Merlin_221;seqid=Merlin +Merlin GeneMark.hmm mRNA 121411 123588 . + . ID=Merlin_221_mRNA;Parent=Merlin_221;seqid=Merlin +Merlin GeneMark.hmm exon 121411 123588 . + . ID=Merlin_221_exon;Parent=Merlin_221_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 121411 123588 . + 0 ID=Merlin_221_CDS;Parent=Merlin_221_exon;seqid=Merlin +Merlin GeneMark.hmm gene 123598 124494 -1129.990261 + . ID=Merlin_222;seqid=Merlin +Merlin GeneMark.hmm mRNA 123598 124494 . + . ID=Merlin_222_mRNA;Parent=Merlin_222;seqid=Merlin +Merlin GeneMark.hmm exon 123598 124494 . + . ID=Merlin_222_exon;Parent=Merlin_222_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 123598 124494 . + 0 ID=Merlin_222_CDS;Parent=Merlin_222_exon;seqid=Merlin +Merlin GeneMark.hmm gene 124494 124691 -244.507612 + . ID=Merlin_223;seqid=Merlin +Merlin GeneMark.hmm mRNA 124494 124691 . + . ID=Merlin_223_mRNA;Parent=Merlin_223;seqid=Merlin +Merlin GeneMark.hmm exon 124494 124691 . + . ID=Merlin_223_exon;Parent=Merlin_223_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 124494 124691 . + 0 ID=Merlin_223_CDS;Parent=Merlin_223_exon;seqid=Merlin +Merlin GeneMark.hmm gene 124727 125047 -399.871946 + . ID=Merlin_224;seqid=Merlin +Merlin GeneMark.hmm mRNA 124727 125047 . + . ID=Merlin_224_mRNA;Parent=Merlin_224;seqid=Merlin +Merlin GeneMark.hmm exon 124727 125047 . + . ID=Merlin_224_exon;Parent=Merlin_224_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 124727 125047 . + 0 ID=Merlin_224_CDS;Parent=Merlin_224_exon;seqid=Merlin +Merlin GeneMark.hmm gene 125097 125537 -571.759726 + . ID=Merlin_225;seqid=Merlin +Merlin GeneMark.hmm mRNA 125097 125537 . + . ID=Merlin_225_mRNA;Parent=Merlin_225;seqid=Merlin +Merlin GeneMark.hmm exon 125097 125537 . + . ID=Merlin_225_exon;Parent=Merlin_225_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 125097 125537 . + 0 ID=Merlin_225_CDS;Parent=Merlin_225_exon;seqid=Merlin +Merlin GeneMark.hmm gene 125606 125851 -292.219635 + . ID=Merlin_226;seqid=Merlin +Merlin GeneMark.hmm mRNA 125606 125851 . + . ID=Merlin_226_mRNA;Parent=Merlin_226;seqid=Merlin +Merlin GeneMark.hmm exon 125606 125851 . + . ID=Merlin_226_exon;Parent=Merlin_226_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 125606 125851 . + 0 ID=Merlin_226_CDS;Parent=Merlin_226_exon;seqid=Merlin +Merlin GeneMark.hmm gene 125848 126039 -240.766275 + . ID=Merlin_227;seqid=Merlin +Merlin GeneMark.hmm mRNA 125848 126039 . + . ID=Merlin_227_mRNA;Parent=Merlin_227;seqid=Merlin +Merlin GeneMark.hmm exon 125848 126039 . + . ID=Merlin_227_exon;Parent=Merlin_227_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 125848 126039 . + 0 ID=Merlin_227_CDS;Parent=Merlin_227_exon;seqid=Merlin +Merlin GeneMark.hmm gene 126096 126536 -555.654560 + . ID=Merlin_228;seqid=Merlin +Merlin GeneMark.hmm mRNA 126096 126536 . + . ID=Merlin_228_mRNA;Parent=Merlin_228;seqid=Merlin +Merlin GeneMark.hmm exon 126096 126536 . + . ID=Merlin_228_exon;Parent=Merlin_228_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 126096 126536 . + 0 ID=Merlin_228_CDS;Parent=Merlin_228_exon;seqid=Merlin +Merlin GeneMark.hmm gene 126843 126980 -167.572589 + . ID=Merlin_229;seqid=Merlin +Merlin GeneMark.hmm mRNA 126843 126980 . + . ID=Merlin_229_mRNA;Parent=Merlin_229;seqid=Merlin +Merlin GeneMark.hmm exon 126843 126980 . + . ID=Merlin_229_exon;Parent=Merlin_229_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 126843 126980 . + 0 ID=Merlin_229_CDS;Parent=Merlin_229_exon;seqid=Merlin +Merlin GeneMark.hmm gene 126985 128322 -1655.641432 + . ID=Merlin_230;seqid=Merlin +Merlin GeneMark.hmm mRNA 126985 128322 . + . ID=Merlin_230_mRNA;Parent=Merlin_230;seqid=Merlin +Merlin GeneMark.hmm exon 126985 128322 . + . ID=Merlin_230_exon;Parent=Merlin_230_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 126985 128322 . + 0 ID=Merlin_230_CDS;Parent=Merlin_230_exon;seqid=Merlin +Merlin GeneMark.hmm gene 128313 128453 -176.429391 + . ID=Merlin_231;seqid=Merlin +Merlin GeneMark.hmm mRNA 128313 128453 . + . ID=Merlin_231_mRNA;Parent=Merlin_231;seqid=Merlin +Merlin GeneMark.hmm exon 128313 128453 . + . ID=Merlin_231_exon;Parent=Merlin_231_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 128313 128453 . + 0 ID=Merlin_231_CDS;Parent=Merlin_231_exon;seqid=Merlin +Merlin GeneMark.hmm gene 128634 128867 -280.339767 + . ID=Merlin_232;seqid=Merlin +Merlin GeneMark.hmm mRNA 128634 128867 . + . ID=Merlin_232_mRNA;Parent=Merlin_232;seqid=Merlin +Merlin GeneMark.hmm exon 128634 128867 . + . ID=Merlin_232_exon;Parent=Merlin_232_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 128634 128867 . + 0 ID=Merlin_232_CDS;Parent=Merlin_232_exon;seqid=Merlin +Merlin GeneMark.hmm gene 128931 129194 -323.191370 + . ID=Merlin_233;seqid=Merlin +Merlin GeneMark.hmm mRNA 128931 129194 . + . ID=Merlin_233_mRNA;Parent=Merlin_233;seqid=Merlin +Merlin GeneMark.hmm exon 128931 129194 . + . ID=Merlin_233_exon;Parent=Merlin_233_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 128931 129194 . + 0 ID=Merlin_233_CDS;Parent=Merlin_233_exon;seqid=Merlin +Merlin GeneMark.hmm gene 129202 129471 -345.520317 + . ID=Merlin_234;seqid=Merlin +Merlin GeneMark.hmm mRNA 129202 129471 . + . ID=Merlin_234_mRNA;Parent=Merlin_234;seqid=Merlin +Merlin GeneMark.hmm exon 129202 129471 . + . ID=Merlin_234_exon;Parent=Merlin_234_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 129202 129471 . + 0 ID=Merlin_234_CDS;Parent=Merlin_234_exon;seqid=Merlin +Merlin GeneMark.hmm gene 129581 130225 -789.527965 + . ID=Merlin_235;seqid=Merlin +Merlin GeneMark.hmm mRNA 129581 130225 . + . ID=Merlin_235_mRNA;Parent=Merlin_235;seqid=Merlin +Merlin GeneMark.hmm exon 129581 130225 . + . ID=Merlin_235_exon;Parent=Merlin_235_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 129581 130225 . + 0 ID=Merlin_235_CDS;Parent=Merlin_235_exon;seqid=Merlin +Merlin GeneMark.hmm gene 130236 130643 -513.741632 + . ID=Merlin_236;seqid=Merlin +Merlin GeneMark.hmm mRNA 130236 130643 . + . ID=Merlin_236_mRNA;Parent=Merlin_236;seqid=Merlin +Merlin GeneMark.hmm exon 130236 130643 . + . ID=Merlin_236_exon;Parent=Merlin_236_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 130236 130643 . + 0 ID=Merlin_236_CDS;Parent=Merlin_236_exon;seqid=Merlin +Merlin GeneMark.hmm gene 130640 131017 -476.781736 + . ID=Merlin_237;seqid=Merlin +Merlin GeneMark.hmm mRNA 130640 131017 . + . ID=Merlin_237_mRNA;Parent=Merlin_237;seqid=Merlin +Merlin GeneMark.hmm exon 130640 131017 . + . ID=Merlin_237_exon;Parent=Merlin_237_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 130640 131017 . + 0 ID=Merlin_237_CDS;Parent=Merlin_237_exon;seqid=Merlin +Merlin GeneMark.hmm gene 131017 131289 -326.061964 + . ID=Merlin_238;seqid=Merlin +Merlin GeneMark.hmm mRNA 131017 131289 . + . ID=Merlin_238_mRNA;Parent=Merlin_238;seqid=Merlin +Merlin GeneMark.hmm exon 131017 131289 . + . ID=Merlin_238_exon;Parent=Merlin_238_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 131017 131289 . + 0 ID=Merlin_238_CDS;Parent=Merlin_238_exon;seqid=Merlin +Merlin GeneMark.hmm gene 131289 131597 -389.454269 + . ID=Merlin_239;seqid=Merlin +Merlin GeneMark.hmm mRNA 131289 131597 . + . ID=Merlin_239_mRNA;Parent=Merlin_239;seqid=Merlin +Merlin GeneMark.hmm exon 131289 131597 . + . ID=Merlin_239_exon;Parent=Merlin_239_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 131289 131597 . + 0 ID=Merlin_239_CDS;Parent=Merlin_239_exon;seqid=Merlin +Merlin GeneMark.hmm gene 131569 131781 -264.904995 + . ID=Merlin_240;seqid=Merlin +Merlin GeneMark.hmm mRNA 131569 131781 . + . ID=Merlin_240_mRNA;Parent=Merlin_240;seqid=Merlin +Merlin GeneMark.hmm exon 131569 131781 . + . ID=Merlin_240_exon;Parent=Merlin_240_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 131569 131781 . + 0 ID=Merlin_240_CDS;Parent=Merlin_240_exon;seqid=Merlin +Merlin GeneMark.hmm gene 131778 132191 -541.018164 + . ID=Merlin_241;seqid=Merlin +Merlin GeneMark.hmm mRNA 131778 132191 . + . ID=Merlin_241_mRNA;Parent=Merlin_241;seqid=Merlin +Merlin GeneMark.hmm exon 131778 132191 . + . ID=Merlin_241_exon;Parent=Merlin_241_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 131778 132191 . + 0 ID=Merlin_241_CDS;Parent=Merlin_241_exon;seqid=Merlin +Merlin GeneMark.hmm gene 132199 132585 -491.258919 + . ID=Merlin_242;seqid=Merlin +Merlin GeneMark.hmm mRNA 132199 132585 . + . ID=Merlin_242_mRNA;Parent=Merlin_242;seqid=Merlin +Merlin GeneMark.hmm exon 132199 132585 . + . ID=Merlin_242_exon;Parent=Merlin_242_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 132199 132585 . + 0 ID=Merlin_242_CDS;Parent=Merlin_242_exon;seqid=Merlin +Merlin GeneMark.hmm gene 132575 132847 -349.509326 + . ID=Merlin_243;seqid=Merlin +Merlin GeneMark.hmm mRNA 132575 132847 . + . ID=Merlin_243_mRNA;Parent=Merlin_243;seqid=Merlin +Merlin GeneMark.hmm exon 132575 132847 . + . ID=Merlin_243_exon;Parent=Merlin_243_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 132575 132847 . + 0 ID=Merlin_243_CDS;Parent=Merlin_243_exon;seqid=Merlin +Merlin GeneMark.hmm gene 132910 133182 -334.452325 + . ID=Merlin_244;seqid=Merlin +Merlin GeneMark.hmm mRNA 132910 133182 . + . ID=Merlin_244_mRNA;Parent=Merlin_244;seqid=Merlin +Merlin GeneMark.hmm exon 132910 133182 . + . ID=Merlin_244_exon;Parent=Merlin_244_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 132910 133182 . + 0 ID=Merlin_244_CDS;Parent=Merlin_244_exon;seqid=Merlin +Merlin GeneMark.hmm gene 133179 133835 -859.997228 - . ID=Merlin_245;seqid=Merlin +Merlin GeneMark.hmm mRNA 133179 133835 . - . ID=Merlin_245_mRNA;Parent=Merlin_245;seqid=Merlin +Merlin GeneMark.hmm exon 133179 133835 . - . ID=Merlin_245_exon;Parent=Merlin_245_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 133179 133835 . - 0 ID=Merlin_245_CDS;Parent=Merlin_245_exon;seqid=Merlin +Merlin GeneMark.hmm gene 133857 134663 -1049.900868 - . ID=Merlin_246;seqid=Merlin +Merlin GeneMark.hmm mRNA 133857 134663 . - . ID=Merlin_246_mRNA;Parent=Merlin_246;seqid=Merlin +Merlin GeneMark.hmm exon 133857 134663 . - . ID=Merlin_246_exon;Parent=Merlin_246_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 133857 134663 . - 0 ID=Merlin_246_CDS;Parent=Merlin_246_exon;seqid=Merlin +Merlin GeneMark.hmm gene 134693 137068 -3033.417419 - . ID=Merlin_247;seqid=Merlin +Merlin GeneMark.hmm mRNA 134693 137068 . - . ID=Merlin_247_mRNA;Parent=Merlin_247;seqid=Merlin +Merlin GeneMark.hmm exon 134693 137068 . - . ID=Merlin_247_exon;Parent=Merlin_247_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 134693 137068 . - 0 ID=Merlin_247_CDS;Parent=Merlin_247_exon;seqid=Merlin +Merlin GeneMark.hmm gene 137075 137734 -856.122084 - . ID=Merlin_248;seqid=Merlin +Merlin GeneMark.hmm mRNA 137075 137734 . - . ID=Merlin_248_mRNA;Parent=Merlin_248;seqid=Merlin +Merlin GeneMark.hmm exon 137075 137734 . - . ID=Merlin_248_exon;Parent=Merlin_248_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 137075 137734 . - 0 ID=Merlin_248_CDS;Parent=Merlin_248_exon;seqid=Merlin +Merlin GeneMark.hmm gene 137787 138962 -1500.330086 - . ID=Merlin_249;seqid=Merlin +Merlin GeneMark.hmm mRNA 137787 138962 . - . ID=Merlin_249_mRNA;Parent=Merlin_249;seqid=Merlin +Merlin GeneMark.hmm exon 137787 138962 . - . ID=Merlin_249_exon;Parent=Merlin_249_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 137787 138962 . - 0 ID=Merlin_249_CDS;Parent=Merlin_249_exon;seqid=Merlin +Merlin GeneMark.hmm gene 138962 142759 -4791.853068 - . ID=Merlin_250;seqid=Merlin +Merlin GeneMark.hmm mRNA 138962 142759 . - . ID=Merlin_250_mRNA;Parent=Merlin_250;seqid=Merlin +Merlin GeneMark.hmm exon 138962 142759 . - . ID=Merlin_250_exon;Parent=Merlin_250_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 138962 142759 . - 0 ID=Merlin_250_CDS;Parent=Merlin_250_exon;seqid=Merlin +Merlin GeneMark.hmm gene 142827 143753 -1151.813807 + . ID=Merlin_251;seqid=Merlin +Merlin GeneMark.hmm mRNA 142827 143753 . + . ID=Merlin_251_mRNA;Parent=Merlin_251;seqid=Merlin +Merlin GeneMark.hmm exon 142827 143753 . + . ID=Merlin_251_exon;Parent=Merlin_251_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 142827 143753 . + 0 ID=Merlin_251_CDS;Parent=Merlin_251_exon;seqid=Merlin +Merlin GeneMark.hmm gene 143743 144030 -331.847936 + . ID=Merlin_252;seqid=Merlin +Merlin GeneMark.hmm mRNA 143743 144030 . + . ID=Merlin_252_mRNA;Parent=Merlin_252;seqid=Merlin +Merlin GeneMark.hmm exon 143743 144030 . + . ID=Merlin_252_exon;Parent=Merlin_252_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 143743 144030 . + 0 ID=Merlin_252_CDS;Parent=Merlin_252_exon;seqid=Merlin +Merlin GeneMark.hmm gene 144008 144304 -369.866491 + . ID=Merlin_253;seqid=Merlin +Merlin GeneMark.hmm mRNA 144008 144304 . + . ID=Merlin_253_mRNA;Parent=Merlin_253;seqid=Merlin +Merlin GeneMark.hmm exon 144008 144304 . + . ID=Merlin_253_exon;Parent=Merlin_253_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 144008 144304 . + 0 ID=Merlin_253_CDS;Parent=Merlin_253_exon;seqid=Merlin +Merlin GeneMark.hmm gene 144301 144954 -836.139828 + . ID=Merlin_254;seqid=Merlin +Merlin GeneMark.hmm mRNA 144301 144954 . + . ID=Merlin_254_mRNA;Parent=Merlin_254;seqid=Merlin +Merlin GeneMark.hmm exon 144301 144954 . + . ID=Merlin_254_exon;Parent=Merlin_254_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 144301 144954 . + 0 ID=Merlin_254_CDS;Parent=Merlin_254_exon;seqid=Merlin +Merlin GeneMark.hmm gene 144964 145875 -1124.370545 + . ID=Merlin_255;seqid=Merlin +Merlin GeneMark.hmm mRNA 144964 145875 . + . ID=Merlin_255_mRNA;Parent=Merlin_255;seqid=Merlin +Merlin GeneMark.hmm exon 144964 145875 . + . ID=Merlin_255_exon;Parent=Merlin_255_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 144964 145875 . + 0 ID=Merlin_255_CDS;Parent=Merlin_255_exon;seqid=Merlin +Merlin GeneMark.hmm gene 145979 146218 -290.192159 + . ID=Merlin_256;seqid=Merlin +Merlin GeneMark.hmm mRNA 145979 146218 . + . ID=Merlin_256_mRNA;Parent=Merlin_256;seqid=Merlin +Merlin GeneMark.hmm exon 145979 146218 . + . ID=Merlin_256_exon;Parent=Merlin_256_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 145979 146218 . + 0 ID=Merlin_256_CDS;Parent=Merlin_256_exon;seqid=Merlin +Merlin GeneMark.hmm gene 146253 146519 -322.908748 + . ID=Merlin_257;seqid=Merlin +Merlin GeneMark.hmm mRNA 146253 146519 . + . ID=Merlin_257_mRNA;Parent=Merlin_257;seqid=Merlin +Merlin GeneMark.hmm exon 146253 146519 . + . ID=Merlin_257_exon;Parent=Merlin_257_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 146253 146519 . + 0 ID=Merlin_257_CDS;Parent=Merlin_257_exon;seqid=Merlin +Merlin GeneMark.hmm gene 146520 146744 -274.376507 + . ID=Merlin_258;seqid=Merlin +Merlin GeneMark.hmm mRNA 146520 146744 . + . ID=Merlin_258_mRNA;Parent=Merlin_258;seqid=Merlin +Merlin GeneMark.hmm exon 146520 146744 . + . ID=Merlin_258_exon;Parent=Merlin_258_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 146520 146744 . + 0 ID=Merlin_258_CDS;Parent=Merlin_258_exon;seqid=Merlin +Merlin GeneMark.hmm gene 146825 147040 -255.288456 + . ID=Merlin_259;seqid=Merlin +Merlin GeneMark.hmm mRNA 146825 147040 . + . ID=Merlin_259_mRNA;Parent=Merlin_259;seqid=Merlin +Merlin GeneMark.hmm exon 146825 147040 . + . ID=Merlin_259_exon;Parent=Merlin_259_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 146825 147040 . + 0 ID=Merlin_259_CDS;Parent=Merlin_259_exon;seqid=Merlin +Merlin GeneMark.hmm gene 147054 147419 -449.354834 + . ID=Merlin_260;seqid=Merlin +Merlin GeneMark.hmm mRNA 147054 147419 . + . ID=Merlin_260_mRNA;Parent=Merlin_260;seqid=Merlin +Merlin GeneMark.hmm exon 147054 147419 . + . ID=Merlin_260_exon;Parent=Merlin_260_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 147054 147419 . + 0 ID=Merlin_260_CDS;Parent=Merlin_260_exon;seqid=Merlin +Merlin GeneMark.hmm gene 147477 147755 -346.840279 + . ID=Merlin_261;seqid=Merlin +Merlin GeneMark.hmm mRNA 147477 147755 . + . ID=Merlin_261_mRNA;Parent=Merlin_261;seqid=Merlin +Merlin GeneMark.hmm exon 147477 147755 . + . ID=Merlin_261_exon;Parent=Merlin_261_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 147477 147755 . + 0 ID=Merlin_261_CDS;Parent=Merlin_261_exon;seqid=Merlin +Merlin GeneMark.hmm gene 147755 148078 -405.900125 + . ID=Merlin_262;seqid=Merlin +Merlin GeneMark.hmm mRNA 147755 148078 . + . ID=Merlin_262_mRNA;Parent=Merlin_262;seqid=Merlin +Merlin GeneMark.hmm exon 147755 148078 . + . ID=Merlin_262_exon;Parent=Merlin_262_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 147755 148078 . + 0 ID=Merlin_262_CDS;Parent=Merlin_262_exon;seqid=Merlin +Merlin GeneMark.hmm gene 148078 148293 -271.597843 + . ID=Merlin_263;seqid=Merlin +Merlin GeneMark.hmm mRNA 148078 148293 . + . ID=Merlin_263_mRNA;Parent=Merlin_263;seqid=Merlin +Merlin GeneMark.hmm exon 148078 148293 . + . ID=Merlin_263_exon;Parent=Merlin_263_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 148078 148293 . + 0 ID=Merlin_263_CDS;Parent=Merlin_263_exon;seqid=Merlin +Merlin GeneMark.hmm gene 148385 148636 -312.527190 + . ID=Merlin_264;seqid=Merlin +Merlin GeneMark.hmm mRNA 148385 148636 . + . ID=Merlin_264_mRNA;Parent=Merlin_264;seqid=Merlin +Merlin GeneMark.hmm exon 148385 148636 . + . ID=Merlin_264_exon;Parent=Merlin_264_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 148385 148636 . + 0 ID=Merlin_264_CDS;Parent=Merlin_264_exon;seqid=Merlin +Merlin GeneMark.hmm gene 148636 149229 -751.963856 + . ID=Merlin_265;seqid=Merlin +Merlin GeneMark.hmm mRNA 148636 149229 . + . ID=Merlin_265_mRNA;Parent=Merlin_265;seqid=Merlin +Merlin GeneMark.hmm exon 148636 149229 . + . ID=Merlin_265_exon;Parent=Merlin_265_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 148636 149229 . + 0 ID=Merlin_265_CDS;Parent=Merlin_265_exon;seqid=Merlin +Merlin GeneMark.hmm gene 149226 149555 -411.956487 + . ID=Merlin_266;seqid=Merlin +Merlin GeneMark.hmm mRNA 149226 149555 . + . ID=Merlin_266_mRNA;Parent=Merlin_266;seqid=Merlin +Merlin GeneMark.hmm exon 149226 149555 . + . ID=Merlin_266_exon;Parent=Merlin_266_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 149226 149555 . + 0 ID=Merlin_266_CDS;Parent=Merlin_266_exon;seqid=Merlin +Merlin GeneMark.hmm gene 149533 149880 -436.887846 + . ID=Merlin_267;seqid=Merlin +Merlin GeneMark.hmm mRNA 149533 149880 . + . ID=Merlin_267_mRNA;Parent=Merlin_267;seqid=Merlin +Merlin GeneMark.hmm exon 149533 149880 . + . ID=Merlin_267_exon;Parent=Merlin_267_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 149533 149880 . + 0 ID=Merlin_267_CDS;Parent=Merlin_267_exon;seqid=Merlin +Merlin GeneMark.hmm gene 149877 150737 -1096.070881 + . ID=Merlin_268;seqid=Merlin +Merlin GeneMark.hmm mRNA 149877 150737 . + . ID=Merlin_268_mRNA;Parent=Merlin_268;seqid=Merlin +Merlin GeneMark.hmm exon 149877 150737 . + . ID=Merlin_268_exon;Parent=Merlin_268_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 149877 150737 . + 0 ID=Merlin_268_CDS;Parent=Merlin_268_exon;seqid=Merlin +Merlin GeneMark.hmm gene 150734 150925 -235.875923 + . ID=Merlin_269;seqid=Merlin +Merlin GeneMark.hmm mRNA 150734 150925 . + . ID=Merlin_269_mRNA;Parent=Merlin_269;seqid=Merlin +Merlin GeneMark.hmm exon 150734 150925 . + . ID=Merlin_269_exon;Parent=Merlin_269_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 150734 150925 . + 0 ID=Merlin_269_CDS;Parent=Merlin_269_exon;seqid=Merlin +Merlin GeneMark.hmm gene 150922 151227 -402.602546 + . ID=Merlin_270;seqid=Merlin +Merlin GeneMark.hmm mRNA 150922 151227 . + . ID=Merlin_270_mRNA;Parent=Merlin_270;seqid=Merlin +Merlin GeneMark.hmm exon 150922 151227 . + . ID=Merlin_270_exon;Parent=Merlin_270_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 150922 151227 . + 0 ID=Merlin_270_CDS;Parent=Merlin_270_exon;seqid=Merlin +Merlin GeneMark.hmm gene 151218 153473 -2890.442885 + . ID=Merlin_271;seqid=Merlin +Merlin GeneMark.hmm mRNA 151218 153473 . + . ID=Merlin_271_mRNA;Parent=Merlin_271;seqid=Merlin +Merlin GeneMark.hmm exon 151218 153473 . + . ID=Merlin_271_exon;Parent=Merlin_271_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 151218 153473 . + 0 ID=Merlin_271_CDS;Parent=Merlin_271_exon;seqid=Merlin +Merlin GeneMark.hmm gene 153580 154722 -1440.286123 + . ID=Merlin_272;seqid=Merlin +Merlin GeneMark.hmm mRNA 153580 154722 . + . ID=Merlin_272_mRNA;Parent=Merlin_272;seqid=Merlin +Merlin GeneMark.hmm exon 153580 154722 . + . ID=Merlin_272_exon;Parent=Merlin_272_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 153580 154722 . + 0 ID=Merlin_272_CDS;Parent=Merlin_272_exon;seqid=Merlin +Merlin GeneMark.hmm gene 154749 155165 -537.328485 + . ID=Merlin_273;seqid=Merlin +Merlin GeneMark.hmm mRNA 154749 155165 . + . ID=Merlin_273_mRNA;Parent=Merlin_273;seqid=Merlin +Merlin GeneMark.hmm exon 154749 155165 . + . ID=Merlin_273_exon;Parent=Merlin_273_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 154749 155165 . + 0 ID=Merlin_273_CDS;Parent=Merlin_273_exon;seqid=Merlin +Merlin GeneMark.hmm gene 155162 155392 -284.548380 + . ID=Merlin_274;seqid=Merlin +Merlin GeneMark.hmm mRNA 155162 155392 . + . ID=Merlin_274_mRNA;Parent=Merlin_274;seqid=Merlin +Merlin GeneMark.hmm exon 155162 155392 . + . ID=Merlin_274_exon;Parent=Merlin_274_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 155162 155392 . + 0 ID=Merlin_274_CDS;Parent=Merlin_274_exon;seqid=Merlin +Merlin GeneMark.hmm gene 155392 156522 -1423.600588 + . ID=Merlin_275;seqid=Merlin +Merlin GeneMark.hmm mRNA 155392 156522 . + . ID=Merlin_275_mRNA;Parent=Merlin_275;seqid=Merlin +Merlin GeneMark.hmm exon 155392 156522 . + . ID=Merlin_275_exon;Parent=Merlin_275_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 155392 156522 . + 0 ID=Merlin_275_CDS;Parent=Merlin_275_exon;seqid=Merlin +Merlin GeneMark.hmm gene 156585 157088 -632.566444 + . ID=Merlin_276;seqid=Merlin +Merlin GeneMark.hmm mRNA 156585 157088 . + . ID=Merlin_276_mRNA;Parent=Merlin_276;seqid=Merlin +Merlin GeneMark.hmm exon 156585 157088 . + . ID=Merlin_276_exon;Parent=Merlin_276_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 156585 157088 . + 0 ID=Merlin_276_CDS;Parent=Merlin_276_exon;seqid=Merlin +Merlin GeneMark.hmm gene 157076 157432 -439.709209 + . ID=Merlin_277;seqid=Merlin +Merlin GeneMark.hmm mRNA 157076 157432 . + . ID=Merlin_277_mRNA;Parent=Merlin_277;seqid=Merlin +Merlin GeneMark.hmm exon 157076 157432 . + . ID=Merlin_277_exon;Parent=Merlin_277_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 157076 157432 . + 0 ID=Merlin_277_CDS;Parent=Merlin_277_exon;seqid=Merlin +Merlin GeneMark.hmm gene 157429 157734 -403.460144 + . ID=Merlin_278;seqid=Merlin +Merlin GeneMark.hmm mRNA 157429 157734 . + . ID=Merlin_278_mRNA;Parent=Merlin_278;seqid=Merlin +Merlin GeneMark.hmm exon 157429 157734 . + . ID=Merlin_278_exon;Parent=Merlin_278_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 157429 157734 . + 0 ID=Merlin_278_CDS;Parent=Merlin_278_exon;seqid=Merlin +Merlin GeneMark.hmm gene 157836 158312 -603.091441 + . ID=Merlin_279;seqid=Merlin +Merlin GeneMark.hmm mRNA 157836 158312 . + . ID=Merlin_279_mRNA;Parent=Merlin_279;seqid=Merlin +Merlin GeneMark.hmm exon 157836 158312 . + . ID=Merlin_279_exon;Parent=Merlin_279_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 157836 158312 . + 0 ID=Merlin_279_CDS;Parent=Merlin_279_exon;seqid=Merlin +Merlin GeneMark.hmm gene 158309 158668 -447.203441 + . ID=Merlin_280;seqid=Merlin +Merlin GeneMark.hmm mRNA 158309 158668 . + . ID=Merlin_280_mRNA;Parent=Merlin_280;seqid=Merlin +Merlin GeneMark.hmm exon 158309 158668 . + . ID=Merlin_280_exon;Parent=Merlin_280_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 158309 158668 . + 0 ID=Merlin_280_CDS;Parent=Merlin_280_exon;seqid=Merlin +Merlin GeneMark.hmm gene 158665 158838 -212.409539 + . ID=Merlin_281;seqid=Merlin +Merlin GeneMark.hmm mRNA 158665 158838 . + . ID=Merlin_281_mRNA;Parent=Merlin_281;seqid=Merlin +Merlin GeneMark.hmm exon 158665 158838 . + . ID=Merlin_281_exon;Parent=Merlin_281_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 158665 158838 . + 0 ID=Merlin_281_CDS;Parent=Merlin_281_exon;seqid=Merlin +Merlin GeneMark.hmm gene 158835 159731 -1132.126395 + . ID=Merlin_282;seqid=Merlin +Merlin GeneMark.hmm mRNA 158835 159731 . + . ID=Merlin_282_mRNA;Parent=Merlin_282;seqid=Merlin +Merlin GeneMark.hmm exon 158835 159731 . + . ID=Merlin_282_exon;Parent=Merlin_282_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 158835 159731 . + 0 ID=Merlin_282_CDS;Parent=Merlin_282_exon;seqid=Merlin +Merlin GeneMark.hmm gene 159731 159922 -235.781764 + . ID=Merlin_283;seqid=Merlin +Merlin GeneMark.hmm mRNA 159731 159922 . + . ID=Merlin_283_mRNA;Parent=Merlin_283;seqid=Merlin +Merlin GeneMark.hmm exon 159731 159922 . + . ID=Merlin_283_exon;Parent=Merlin_283_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 159731 159922 . + 0 ID=Merlin_283_CDS;Parent=Merlin_283_exon;seqid=Merlin +Merlin GeneMark.hmm gene 159922 160137 -267.519915 + . ID=Merlin_284;seqid=Merlin +Merlin GeneMark.hmm mRNA 159922 160137 . + . ID=Merlin_284_mRNA;Parent=Merlin_284;seqid=Merlin +Merlin GeneMark.hmm exon 159922 160137 . + . ID=Merlin_284_exon;Parent=Merlin_284_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 159922 160137 . + 0 ID=Merlin_284_CDS;Parent=Merlin_284_exon;seqid=Merlin +Merlin GeneMark.hmm gene 160137 160436 -372.267833 + . ID=Merlin_285;seqid=Merlin +Merlin GeneMark.hmm mRNA 160137 160436 . + . ID=Merlin_285_mRNA;Parent=Merlin_285;seqid=Merlin +Merlin GeneMark.hmm exon 160137 160436 . + . ID=Merlin_285_exon;Parent=Merlin_285_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 160137 160436 . + 0 ID=Merlin_285_CDS;Parent=Merlin_285_exon;seqid=Merlin +Merlin GeneMark.hmm gene 160414 160641 -289.957825 + . ID=Merlin_286;seqid=Merlin +Merlin GeneMark.hmm mRNA 160414 160641 . + . ID=Merlin_286_mRNA;Parent=Merlin_286;seqid=Merlin +Merlin GeneMark.hmm exon 160414 160641 . + . ID=Merlin_286_exon;Parent=Merlin_286_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 160414 160641 . + 0 ID=Merlin_286_CDS;Parent=Merlin_286_exon;seqid=Merlin +Merlin GeneMark.hmm gene 160638 160985 -435.855402 + . ID=Merlin_287;seqid=Merlin +Merlin GeneMark.hmm mRNA 160638 160985 . + . ID=Merlin_287_mRNA;Parent=Merlin_287;seqid=Merlin +Merlin GeneMark.hmm exon 160638 160985 . + . ID=Merlin_287_exon;Parent=Merlin_287_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 160638 160985 . + 0 ID=Merlin_287_CDS;Parent=Merlin_287_exon;seqid=Merlin +Merlin GeneMark.hmm gene 160986 161549 -716.263909 + . ID=Merlin_288;seqid=Merlin +Merlin GeneMark.hmm mRNA 160986 161549 . + . ID=Merlin_288_mRNA;Parent=Merlin_288;seqid=Merlin +Merlin GeneMark.hmm exon 160986 161549 . + . ID=Merlin_288_exon;Parent=Merlin_288_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 160986 161549 . + 0 ID=Merlin_288_CDS;Parent=Merlin_288_exon;seqid=Merlin +Merlin GeneMark.hmm gene 161546 161848 -371.966910 + . ID=Merlin_289;seqid=Merlin +Merlin GeneMark.hmm mRNA 161546 161848 . + . ID=Merlin_289_mRNA;Parent=Merlin_289;seqid=Merlin +Merlin GeneMark.hmm exon 161546 161848 . + . ID=Merlin_289_exon;Parent=Merlin_289_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 161546 161848 . + 0 ID=Merlin_289_CDS;Parent=Merlin_289_exon;seqid=Merlin +Merlin GeneMark.hmm gene 161845 162081 -287.849916 + . ID=Merlin_290;seqid=Merlin +Merlin GeneMark.hmm mRNA 161845 162081 . + . ID=Merlin_290_mRNA;Parent=Merlin_290;seqid=Merlin +Merlin GeneMark.hmm exon 161845 162081 . + . ID=Merlin_290_exon;Parent=Merlin_290_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 161845 162081 . + 0 ID=Merlin_290_CDS;Parent=Merlin_290_exon;seqid=Merlin +Merlin GeneMark.hmm gene 162074 162391 -387.962641 + . ID=Merlin_291;seqid=Merlin +Merlin GeneMark.hmm mRNA 162074 162391 . + . ID=Merlin_291_mRNA;Parent=Merlin_291;seqid=Merlin +Merlin GeneMark.hmm exon 162074 162391 . + . ID=Merlin_291_exon;Parent=Merlin_291_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 162074 162391 . + 0 ID=Merlin_291_CDS;Parent=Merlin_291_exon;seqid=Merlin +Merlin GeneMark.hmm gene 162449 162775 -406.965469 + . ID=Merlin_292;seqid=Merlin +Merlin GeneMark.hmm mRNA 162449 162775 . + . ID=Merlin_292_mRNA;Parent=Merlin_292;seqid=Merlin +Merlin GeneMark.hmm exon 162449 162775 . + . ID=Merlin_292_exon;Parent=Merlin_292_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 162449 162775 . + 0 ID=Merlin_292_CDS;Parent=Merlin_292_exon;seqid=Merlin +Merlin GeneMark.hmm gene 162905 163159 -321.120824 + . ID=Merlin_293;seqid=Merlin +Merlin GeneMark.hmm mRNA 162905 163159 . + . ID=Merlin_293_mRNA;Parent=Merlin_293;seqid=Merlin +Merlin GeneMark.hmm exon 162905 163159 . + . ID=Merlin_293_exon;Parent=Merlin_293_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 162905 163159 . + 0 ID=Merlin_293_CDS;Parent=Merlin_293_exon;seqid=Merlin +Merlin GeneMark.hmm gene 163465 163644 -217.336356 + . ID=Merlin_294;seqid=Merlin +Merlin GeneMark.hmm mRNA 163465 163644 . + . ID=Merlin_294_mRNA;Parent=Merlin_294;seqid=Merlin +Merlin GeneMark.hmm exon 163465 163644 . + . ID=Merlin_294_exon;Parent=Merlin_294_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 163465 163644 . + 0 ID=Merlin_294_CDS;Parent=Merlin_294_exon;seqid=Merlin +Merlin GeneMark.hmm gene 163764 164132 -441.864606 + . ID=Merlin_295;seqid=Merlin +Merlin GeneMark.hmm mRNA 163764 164132 . + . ID=Merlin_295_mRNA;Parent=Merlin_295;seqid=Merlin +Merlin GeneMark.hmm exon 163764 164132 . + . ID=Merlin_295_exon;Parent=Merlin_295_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 163764 164132 . + 0 ID=Merlin_295_CDS;Parent=Merlin_295_exon;seqid=Merlin +Merlin GeneMark.hmm gene 164158 164646 -602.734029 + . ID=Merlin_296;seqid=Merlin +Merlin GeneMark.hmm mRNA 164158 164646 . + . ID=Merlin_296_mRNA;Parent=Merlin_296;seqid=Merlin +Merlin GeneMark.hmm exon 164158 164646 . + . ID=Merlin_296_exon;Parent=Merlin_296_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 164158 164646 . + 0 ID=Merlin_296_CDS;Parent=Merlin_296_exon;seqid=Merlin +Merlin GeneMark.hmm gene 164715 165071 -451.064481 + . ID=Merlin_297;seqid=Merlin +Merlin GeneMark.hmm mRNA 164715 165071 . + . ID=Merlin_297_mRNA;Parent=Merlin_297;seqid=Merlin +Merlin GeneMark.hmm exon 164715 165071 . + . ID=Merlin_297_exon;Parent=Merlin_297_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 164715 165071 . + 0 ID=Merlin_297_CDS;Parent=Merlin_297_exon;seqid=Merlin +Merlin GeneMark.hmm gene 165107 165601 -618.360781 + . ID=Merlin_298;seqid=Merlin +Merlin GeneMark.hmm mRNA 165107 165601 . + . ID=Merlin_298_mRNA;Parent=Merlin_298;seqid=Merlin +Merlin GeneMark.hmm exon 165107 165601 . + . ID=Merlin_298_exon;Parent=Merlin_298_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 165107 165601 . + 0 ID=Merlin_298_CDS;Parent=Merlin_298_exon;seqid=Merlin +Merlin GeneMark.hmm gene 165612 165773 -191.091430 + . ID=Merlin_299;seqid=Merlin +Merlin GeneMark.hmm mRNA 165612 165773 . + . ID=Merlin_299_mRNA;Parent=Merlin_299;seqid=Merlin +Merlin GeneMark.hmm exon 165612 165773 . + . ID=Merlin_299_exon;Parent=Merlin_299_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 165612 165773 . + 0 ID=Merlin_299_CDS;Parent=Merlin_299_exon;seqid=Merlin +Merlin GeneMark.hmm gene 165770 166000 -285.030914 + . ID=Merlin_300;seqid=Merlin +Merlin GeneMark.hmm mRNA 165770 166000 . + . ID=Merlin_300_mRNA;Parent=Merlin_300;seqid=Merlin +Merlin GeneMark.hmm exon 165770 166000 . + . ID=Merlin_300_exon;Parent=Merlin_300_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 165770 166000 . + 0 ID=Merlin_300_CDS;Parent=Merlin_300_exon;seqid=Merlin +Merlin GeneMark.hmm gene 165997 166191 -241.609251 + . ID=Merlin_301;seqid=Merlin +Merlin GeneMark.hmm mRNA 165997 166191 . + . ID=Merlin_301_mRNA;Parent=Merlin_301;seqid=Merlin +Merlin GeneMark.hmm exon 165997 166191 . + . ID=Merlin_301_exon;Parent=Merlin_301_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 165997 166191 . + 0 ID=Merlin_301_CDS;Parent=Merlin_301_exon;seqid=Merlin +Merlin GeneMark.hmm gene 166352 167200 -1091.167753 + . ID=Merlin_302;seqid=Merlin +Merlin GeneMark.hmm mRNA 166352 167200 . + . ID=Merlin_302_mRNA;Parent=Merlin_302;seqid=Merlin +Merlin GeneMark.hmm exon 166352 167200 . + . ID=Merlin_302_exon;Parent=Merlin_302_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 166352 167200 . + 0 ID=Merlin_302_CDS;Parent=Merlin_302_exon;seqid=Merlin +Merlin GeneMark.hmm gene 167197 167433 -294.645060 + . ID=Merlin_303;seqid=Merlin +Merlin GeneMark.hmm mRNA 167197 167433 . + . ID=Merlin_303_mRNA;Parent=Merlin_303;seqid=Merlin +Merlin GeneMark.hmm exon 167197 167433 . + . ID=Merlin_303_exon;Parent=Merlin_303_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 167197 167433 . + 0 ID=Merlin_303_CDS;Parent=Merlin_303_exon;seqid=Merlin +Merlin GeneMark.hmm gene 167487 168944 -1811.170385 + . ID=Merlin_304;seqid=Merlin +Merlin GeneMark.hmm mRNA 167487 168944 . + . ID=Merlin_304_mRNA;Parent=Merlin_304;seqid=Merlin +Merlin GeneMark.hmm exon 167487 168944 . + . ID=Merlin_304_exon;Parent=Merlin_304_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 167487 168944 . + 0 ID=Merlin_304_CDS;Parent=Merlin_304_exon;seqid=Merlin +Merlin GeneMark.hmm gene 168941 169120 -220.159549 + . ID=Merlin_305;seqid=Merlin +Merlin GeneMark.hmm mRNA 168941 169120 . + . ID=Merlin_305_mRNA;Parent=Merlin_305;seqid=Merlin +Merlin GeneMark.hmm exon 168941 169120 . + . ID=Merlin_305_exon;Parent=Merlin_305_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 168941 169120 . + 0 ID=Merlin_305_CDS;Parent=Merlin_305_exon;seqid=Merlin +Merlin GeneMark.hmm gene 169175 171265 -2617.092758 + . ID=Merlin_306;seqid=Merlin +Merlin GeneMark.hmm mRNA 169175 171265 . + . ID=Merlin_306_mRNA;Parent=Merlin_306;seqid=Merlin +Merlin GeneMark.hmm exon 169175 171265 . + . ID=Merlin_306_exon;Parent=Merlin_306_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 169175 171265 . + 0 ID=Merlin_306_CDS;Parent=Merlin_306_exon;seqid=Merlin +Merlin GeneMark.hmm gene 171301 172788 -1876.322043 + . ID=Merlin_307;seqid=Merlin +Merlin GeneMark.hmm mRNA 171301 172788 . + . ID=Merlin_307_mRNA;Parent=Merlin_307;seqid=Merlin +Merlin GeneMark.hmm exon 171301 172788 . + . ID=Merlin_307_exon;Parent=Merlin_307_mRNA;seqid=Merlin +Merlin GeneMark.hmm CDS 171301 172788 . + 0 ID=Merlin_307_CDS;Parent=Merlin_307_exon;seqid=Merlin
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/vcf/test.vcf Thu Mar 28 04:51:06 2024 +0000 @@ -0,0 +1,23 @@ +##fileformat=VCFv4.0 +##fileDate=20090805 +##source=myImputationProgramV3.1 +##reference=1000GenomesPilot-NCBI36 +##phasing=partial +##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data"> +##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> +##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency"> +##INFO=<ID=AA,Number=1,Type=String,Description="Ancestral Allele"> +##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP membership, build 129"> +##INFO=<ID=H2,Number=0,Type=Flag,Description="HapMap2 membership"> +##FILTER=<ID=q10,Description="Quality below 10"> +##FILTER=<ID=s50,Description="Less than 50% of samples have data"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> +##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> +##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA00001 NA00002 NA00003 +Merlin 14370 rs6054257 G A 29 PASS NS=3;DP=14;AF=0.5;DB;H2 GT:GQ:DP:HQ 0|0:48:1:51,51 1|0:48:8:51,51 1/1:43:5:.,. +Merlin 17330 . T A 3 q10 NS=3;DP=11;AF=0.017 GT:GQ:DP:HQ 0|0:49:3:58,50 0|1:3:5:65,3 0/0:41:3 +Merlin 1110696 rs6040355 A G,T 67 PASS NS=2;DP=10;AF=0.333,0.667;AA=T;DB GT:GQ:DP:HQ 1|2:21:6:23,27 2|1:2:0:18,2 2/2:35:4 +Merlin 1230237 . T . 47 PASS NS=3;DP=13;AA=T GT:GQ:DP:HQ 0|0:54:7:56,60 0|0:48:4:51,51 0/0:61:2 +Merlin 1234567 microsat1 GTCT G,GTACT 50 PASS NS=3;DP=9;AA=G GT:GQ:DP 0/1:35:4 0/2:17:2 1/1:40:3
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/xmfa.gff Thu Mar 28 04:51:06 2024 +0000 @@ -0,0 +1,5918 @@ +##gff-version 3 +##sequence-region Merlin 1 172788 +Merlin progressiveMauve match 123963 171642 . - . ID=HM137666;Target=HM137666 +Merlin progressiveMauve match_part 123963 123982 80 + . Parent=HM137666 +Merlin progressiveMauve match_part 123983 124032 62 + . Parent=HM137666 +Merlin progressiveMauve match_part 124033 124082 86 + . Parent=HM137666 +Merlin progressiveMauve match_part 124083 124132 72 + . Parent=HM137666 +Merlin progressiveMauve match_part 124133 124182 78 + . Parent=HM137666 +Merlin progressiveMauve match_part 124183 124232 70 + . Parent=HM137666 +Merlin progressiveMauve match_part 124233 124282 48 + . Parent=HM137666 +Merlin progressiveMauve match_part 124283 124329 42.5531914894 + . Parent=HM137666 +Merlin progressiveMauve match_part 124469 124494 73.0769230769 + . Parent=HM137666 +Merlin progressiveMauve match_part 124495 124544 56 + . Parent=HM137666 +Merlin progressiveMauve match_part 124601 124650 56 + . Parent=HM137666 +Merlin progressiveMauve match_part 124651 124700 54 + . Parent=HM137666 +Merlin progressiveMauve match_part 124701 124750 56 + . Parent=HM137666 +Merlin progressiveMauve match_part 124751 124796 56.5217391304 + . Parent=HM137666 +Merlin progressiveMauve match_part 124797 124846 14 + . Parent=HM137666 +Merlin progressiveMauve match_part 124847 124868 27.2727272727 + . Parent=HM137666 +Merlin progressiveMauve match_part 124869 124918 68 + . Parent=HM137666 +Merlin progressiveMauve match_part 124919 124964 45.652173913 + . Parent=HM137666 +Merlin progressiveMauve match_part 124965 125009 55.5555555556 + . Parent=HM137666 +Merlin progressiveMauve match_part 125010 125059 58 + . Parent=HM137666 +Merlin progressiveMauve match_part 125060 125077 33.3333333333 + . Parent=HM137666 +Merlin progressiveMauve match_part 125078 125127 64 + . 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.test Thu Mar 28 04:51:06 2024 +0000 @@ -0,0 +1,7 @@ +<tables> + <!-- Locations of all fasta files under genome directory --> + <table name="all_fasta" comment_char="#"> + <columns>value, dbkey, name, path</columns> + <file path="${__HERE__}/test-data/all_fasta.loc" /> + </table> +</tables>