Mercurial > repos > galaxy-australia > dorado_trimming
changeset 0:1957f881bdf4 draft
planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/dorado commit 8f48f7ee85162eeaa9c0247c7bb7d699f84d6ca7
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.md Mon Nov 04 03:27:55 2024 +0000 @@ -0,0 +1,48 @@ + +## Tool versions + +Dorado is distributed on +[DockerHub](https://hub.docker.com/r/nanoporetech/dorado/tags) by nanoporetech. +The containers are identified by sha256 hash, but not tagged with a version. + +We can still use the containers and display the dorado version by hard-coding +both dorado version and container hash into the wrapper (see `macros.xml`). +Unfortunately you have to pull a >6 GB container and run `dorado --version` just +to check the tool version. This also prevents auto-updates of this wrapper. + +You can update the list of models at the same time (see +below). **You must do this when you update the wrapper**. + +## Basecalling models + +The models are bundled in the container at `/models` and made available by the +`dorado_models.loc` file. + +The columns are `value`, `container_hash`, `name` and `path`. + +To update the list, modify `tool-data/dorado_models.loc.sample`. + +Because models can be added and removed, models are listed **per container** in +the loc file. + +Here's some code to update the loc file with models from the container with hash +`1c65eb070a9fc1d88710c4dc09b06541f96fdd28`. + +```bash +export DORADO_HASH="1c65eb070a9fc1d88710c4dc09b06541f96fdd28" + +apptainer exec "docker://nanoporetech/dorado:sha${DORADO_HASH}" \ + ls /models | \ + awk -v hash="${DORADO_HASH}" '{print hash "_" $0 "\t" hash "\t" $0 "\t/models/" $0}' \ + > tool-data/dorado_models.loc.sample +``` + +The loc file doesn't have a header, so you can keep it sorted. + +```bash +cp tool-data/dorado_models.loc.sample \ + tool-data/dorado_models.loc.sample.old && +sort -t$'\t' -k1,1V tool-data/dorado_models.loc.sample.old \ + > tool-data/dorado_models.loc.sample +``` +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/dorado_trimming.xml Mon Nov 04 03:27:55 2024 +0000 @@ -0,0 +1,102 @@ +<tool id="dorado_trimming" name="Dorado adapter and primer trimming" version="@VERSION@+galaxy0" python_template_version="3.5" profile="24.1"> + <description>for Oxford Nanopore (ONT) DNA reads</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="xrefs"/> + <expand macro="requirements"/> + <command detect_errors="exit_code"><![CDATA[ + +ln -s '$reads' ./reads + +&& + +dorado trim +--verbose +--threads "\${GALAXY_SLOTS}" +#if $no_trim_primers + --no-trim-primers +#end if +#if $primer_sequences + --primer-sequences '$primer_sequences' +#end if +reads +> trimmed.bam + +&& + +dorado summary +trimmed.bam +> summary.tsv + + + ]]></command> + <inputs> + <param name="reads" type="data" format="bam,fastqsanger,unsorted.bam" label="Existing, basecalled DNA dataset" help="Note: this tool does not support trimming adaptors from RNA reads. These need to be removed during basecalling."/> + <param argument="--no-trim-primers" type="boolean" label="Don't trim primers" help="This option can be used to prevent the trimming of primer sequences. In this case only adapter sequences will be trimmed."/> + <param argument="--primer-sequences" type="data" format="fasta" optional="true" label="Custom primer sequences" help="You can specify an alternative set of primer sequences to search for when trimming by adding a FASTA file containing the primer sequences you want to search for. The record names of the sequences do not matter. Note that if you use this option the normal primer sequences built-in to the dorado software will not be searched for."/> + </inputs> + <outputs> + <data format="unsorted.bam" name="out_bam" label="Reads from ${on_string} trimmed by the ${tool.name} tool" from_work_dir="trimmed.bam"/> + <data format="tsv" name="out_tsv" label="${tool.name} sequencing summary for ${on_string}" from_work_dir="summary.tsv"/> + </outputs> + <tests> + <test expect_num_outputs="2"> + <param name="reads" value="FAL00375_473bf0ed_0.ten_reads.bam"/> + <output name="out_bam" ftype="unsorted.bam" file="dorado_trimming_test1.bam"/> + <output name="out_tsv" ftype="tsv" file="dorado_trimming_test1.tsv"/> + </test> + <test expect_num_outputs="2"> + <param name="reads" value="FAL00375_473bf0ed_0.ten_reads.bam"/> + <param name="no_trim_primers" value="True"/> + <output name="out_bam" ftype="unsorted.bam" file="dorado_trimming_test2.bam"/> + <output name="out_tsv" ftype="tsv" file="dorado_trimming_test2.tsv"/> + </test> + <test expect_num_outputs="2"> + <param name="reads" value="lsk109_single_read.fastqsanger.gz" ftype="fastqsanger.gz"/> + <param name="primer_sequences" value="custom_primers.fasta.gz" ftype="fasta.gz"/> + <output name="out_bam" ftype="unsorted.bam" file="dorado_trimming_test3.bam"/> + <output name="out_tsv" ftype="tsv" file="dorado_trimming_test3.tsv"/> + </test> + </tests> + <help><![CDATA[ +Detect and remove any adapter and/or primer sequences from the beginning +and end of DNA reads using Oxford Nanopore’s open source +`Dorado <https://github.com/nanoporetech/dorado/>`__ basecaller. + +This tool scans existing, basecalled datasets for adapter and/or primer +sequences at either end, and trims any such found sequences. + +**If you have raw (un-basecalled) data, you can trim them during +basecalling with the Dorado tool on Galaxy**. + +Note that if you intend to demultiplex the reads later, trimming +adapters and primers may result in some portions of the flanking regions +of the barcodes being removed, which could interfere with correct +demultiplexing. + +The **Don't trim primers** option can be used to prevent the trimming of +primer sequences. In this case only adapter sequences will be trimmed. + +The output of will always be unaligned records, regardless of whether +the input is aligned/sorted or not. + +Custom primer trimming +---------------------- + +The software automatically searches for primer sequences used in Oxford +Nanopore kits. However, you can specify an alternative set of primer +sequences to search by adding a FASTA file of primer sequences in the +**Custom primer sequences** option. The record names of the sequences do +not matter. Note that if you use this option the normal primer sequences +built-in to the dorado software will not be searched for. + +RNA adapter trimming +-------------------- + +Adapters for RNA002 and RNA004 kits are automatically trimmed during +basecalling. However, unlike in DNA, the RNA adapter cannot be trimmed +post-basecalling. + ]]></help> + <expand macro="citation"/> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Mon Nov 04 03:27:55 2024 +0000 @@ -0,0 +1,27 @@ +<macros> + <!-- UPDATING: pull the latest container and check the version. Update both tokens. You MUST also update the model list. See README.md for more. --> + <token name="@VERSION@">0.8.2+6b413c9</token> + <token name="@CONTAINER_HASH@">ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29</token> + <xml name="requirements"> + <requirements> + <container type="docker">nanoporetech/dorado:sha@CONTAINER_HASH@</container> + </requirements> + </xml> + <xml name="xrefs"> + <xrefs> + <xref type="bio.tools">dorado</xref> + </xrefs> + </xml> + <xml name="citation"> + <citations> + <citation type="bibtex"> + @misc{dorado, + title = {Dorado}, + author = {{Oxford Nanopore}}, + year = {2024}, + url = {https://github.com/nanoporetech/dorado/}, + } + </citation> + </citations> + </xml> +</macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/dorado_models.loc Mon Nov 04 03:27:55 2024 +0000 @@ -0,0 +1,80 @@ +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_fast@v3.4 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_fast@v3.4 /models/dna_r9.4.1_e8_fast@v3.4 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_fast@v3.4_5mCG@v0.1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_fast@v3.4_5mCG@v0.1 /models/dna_r9.4.1_e8_fast@v3.4_5mCG@v0.1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_fast@v3.4_5mCG_5hmCG@v0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_fast@v3.4_5mCG_5hmCG@v0 /models/dna_r9.4.1_e8_fast@v3.4_5mCG_5hmCG@v0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_hac@v3.3 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_hac@v3.3 /models/dna_r9.4.1_e8_hac@v3.3 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_hac@v3.3_5mCG@v0.1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_hac@v3.3_5mCG@v0.1 /models/dna_r9.4.1_e8_hac@v3.3_5mCG@v0.1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_hac@v3.3_5mCG_5hmCG@v0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_hac@v3.3_5mCG_5hmCG@v0 /models/dna_r9.4.1_e8_hac@v3.3_5mCG_5hmCG@v0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_sup@v3.3 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_sup@v3.3 /models/dna_r9.4.1_e8_sup@v3.3 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_sup@v3.3_5mCG@v0.1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_sup@v3.3_5mCG@v0.1 /models/dna_r9.4.1_e8_sup@v3.3_5mCG@v0.1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_sup@v3.3_5mCG_5hmCG@v0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_sup@v3.3_5mCG_5hmCG@v0 /models/dna_r9.4.1_e8_sup@v3.3_5mCG_5hmCG@v0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_sup@v3.6 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_sup@v3.6 /models/dna_r9.4.1_e8_sup@v3.6 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_5khz_stereo@v1.3 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_5khz_stereo@v1.3 /models/dna_r10.4.1_e8.2_5khz_stereo@v1.3 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_260bps_fast@v4.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_260bps_fast@v4.1.0 /models/dna_r10.4.1_e8.2_260bps_fast@v4.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_260bps_fast@v4.1.0_5mCG_5hmCG@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_260bps_fast@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_260bps_fast@v4.1.0_5mCG_5hmCG@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_260bps_hac@v4.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_260bps_hac@v4.1.0 /models/dna_r10.4.1_e8.2_260bps_hac@v4.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_260bps_hac@v4.1.0_5mCG_5hmCG@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_260bps_hac@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_260bps_hac@v4.1.0_5mCG_5hmCG@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_260bps_sup@v4.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_260bps_sup@v4.1.0 /models/dna_r10.4.1_e8.2_260bps_sup@v4.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_260bps_sup@v4.1.0_5mCG_5hmCG@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_260bps_sup@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_260bps_sup@v4.1.0_5mCG_5hmCG@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_fast@v4.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_fast@v4.1.0 /models/dna_r10.4.1_e8.2_400bps_fast@v4.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_fast@v4.1.0_5mCG_5hmCG@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_fast@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_fast@v4.1.0_5mCG_5hmCG@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_fast@v4.2.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_fast@v4.2.0 /models/dna_r10.4.1_e8.2_400bps_fast@v4.2.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_fast@v4.2.0_5mCG_5hmCG@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_fast@v4.2.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_fast@v4.2.0_5mCG_5hmCG@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_fast@v4.3.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_fast@v4.3.0 /models/dna_r10.4.1_e8.2_400bps_fast@v4.3.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_fast@v5.0.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_fast@v5.0.0 /models/dna_r10.4.1_e8.2_400bps_fast@v5.0.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v4.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v4.1.0 /models/dna_r10.4.1_e8.2_400bps_hac@v4.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v4.1.0_5mCG_5hmCG@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_hac@v4.1.0_5mCG_5hmCG@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v4.3.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v4.3.0 /models/dna_r10.4.1_e8.2_400bps_hac@v4.3.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mCG_5hmCG@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mCG_5hmCG@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mCG_5hmCG@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mC_5hmC@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mC_5hmC@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mC_5hmC@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v4.3.0_6mA@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v4.3.0_6mA@v2 /models/dna_r10.4.1_e8.2_400bps_hac@v4.3.0_6mA@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v2 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v2 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v2 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v4.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v4.1.0 /models/dna_r10.4.1_e8.2_400bps_sup@v4.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v4.1.0_5mCG_5hmCG@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_sup@v4.1.0_5mCG_5hmCG@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v4.3.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v4.3.0 /models/dna_r10.4.1_e8.2_400bps_sup@v4.3.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mCG_5hmCG@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mCG_5hmCG@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mCG_5hmCG@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mC_5hmC@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mC_5hmC@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mC_5hmC@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v4.3.0_6mA@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v4.3.0_6mA@v2 /models/dna_r10.4.1_e8.2_400bps_sup@v4.3.0_6mA@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v2 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v2.0.1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v2.0.1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v2.0.1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v2.0.1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v2.0.1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v2.0.1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v2 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_apk_sup@v5.0.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_apk_sup@v5.0.0 /models/dna_r10.4.1_e8.2_apk_sup@v5.0.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna002_70bps_fast@v3 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna002_70bps_fast@v3 /models/rna002_70bps_fast@v3 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna002_70bps_hac@v3 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna002_70bps_hac@v3 /models/rna002_70bps_hac@v3 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_fast@v3.0.1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_fast@v3.0.1 /models/rna004_130bps_fast@v3.0.1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_fast@v5.0.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_fast@v5.0.0 /models/rna004_130bps_fast@v5.0.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_fast@v5.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_fast@v5.1.0 /models/rna004_130bps_fast@v5.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v3.0.1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v3.0.1 /models/rna004_130bps_hac@v3.0.1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.0.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.0.0 /models/rna004_130bps_hac@v5.0.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.0.0_m6A@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.0.0_m6A@v1 /models/rna004_130bps_hac@v5.0.0_m6A@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.0.0_m6A_DRACH@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.0.0_m6A_DRACH@v1 /models/rna004_130bps_hac@v5.0.0_m6A_DRACH@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.0.0_pseU@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.0.0_pseU@v1 /models/rna004_130bps_hac@v5.0.0_pseU@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.1.0 /models/rna004_130bps_hac@v5.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.1.0_inosine_m6A@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.1.0_inosine_m6A@v1 /models/rna004_130bps_hac@v5.1.0_inosine_m6A@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.1.0_m5C@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.1.0_m5C@v1 /models/rna004_130bps_hac@v5.1.0_m5C@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.1.0_m6A_DRACH@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.1.0_m6A_DRACH@v1 /models/rna004_130bps_hac@v5.1.0_m6A_DRACH@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.1.0_pseU@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.1.0_pseU@v1 /models/rna004_130bps_hac@v5.1.0_pseU@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v3.0.1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v3.0.1 /models/rna004_130bps_sup@v3.0.1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v3.0.1_m6A_DRACH@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v3.0.1_m6A_DRACH@v1 /models/rna004_130bps_sup@v3.0.1_m6A_DRACH@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.0.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.0.0 /models/rna004_130bps_sup@v5.0.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.0.0_m6A@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.0.0_m6A@v1 /models/rna004_130bps_sup@v5.0.0_m6A@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.0.0_m6A_DRACH@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.0.0_m6A_DRACH@v1 /models/rna004_130bps_sup@v5.0.0_m6A_DRACH@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.0.0_pseU@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.0.0_pseU@v1 /models/rna004_130bps_sup@v5.0.0_pseU@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.1.0 /models/rna004_130bps_sup@v5.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.1.0_inosine_m6A@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.1.0_inosine_m6A@v1 /models/rna004_130bps_sup@v5.1.0_inosine_m6A@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.1.0_m5C@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.1.0_m5C@v1 /models/rna004_130bps_sup@v5.1.0_m5C@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.1.0_m6A_DRACH@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.1.0_m6A_DRACH@v1 /models/rna004_130bps_sup@v5.1.0_m6A_DRACH@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.1.0_pseU@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.1.0_pseU@v1 /models/rna004_130bps_sup@v5.1.0_pseU@v1
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/dorado_trimming_test1.tsv Mon Nov 04 03:27:55 2024 +0000 @@ -0,0 +1,11 @@ +filename read_id run_id channel mux start_time duration template_start template_duration sequence_length_template mean_qscore_template barcode +reads.pod5 005cf7ae-4d74-42dd-ab96-9befed842822 473bf0edfc2f8f756173de35db5da9b6f6db4959 473 2 258.872 29.436 259.165 29.1435 14587 5.17895 unclassified +reads.pod5 0066800d-d191-4833-a495-cfe8b925aca0 473bf0edfc2f8f756173de35db5da9b6f6db4959 56 4 359.11 14.0378 359.11 14.0378 5111 9.1072 unclassified +reads.pod5 00777c4b-cbd6-4a79-8647-bbe5f5f3f3bf 473bf0edfc2f8f756173de35db5da9b6f6db4959 300 3 329.733 2.5165 329.766 2.484 1055 12.9149 unclassified +reads.pod5 002f231b-5d37-437f-a027-a2e8b872e73b 473bf0edfc2f8f756173de35db5da9b6f6db4959 118 3 534.745 19.5847 534.745 19.5847 8387 9.88254 unclassified +reads.pod5 000a9728-0a7c-4b64-9791-76bb30b63796 473bf0edfc2f8f756173de35db5da9b6f6db4959 105 4 331.319 3.27625 331.319 3.27625 1175 12.0328 unclassified +reads.pod5 0067486b-9f92-4849-8456-671463e64412 473bf0edfc2f8f756173de35db5da9b6f6db4959 84 4 164.018 2.453 164.018 2.453 885 12.399 unclassified +reads.pod5 009f5efd-de5d-4a7e-9d17-969c3996cbc8 473bf0edfc2f8f756173de35db5da9b6f6db4959 230 2 171.634 3.27475 171.634 3.27475 1232 13.6258 unclassified +reads.pod5 00aeb4ba-e404-49d2-97c5-8fcf22547f81 473bf0edfc2f8f756173de35db5da9b6f6db4959 51 4 297.891 50.1888 297.984 50.0962 19142 8.45178 unclassified +reads.pod5 0072b26f-f37c-4517-afa7-621543ac2187 473bf0edfc2f8f756173de35db5da9b6f6db4959 317 3 111.275 2.31875 111.275 2.31875 929 9.69614 unclassified +reads.pod5 00ad521b-b916-404f-a31d-a657f9aa7756 473bf0edfc2f8f756173de35db5da9b6f6db4959 365 2 566.263 23.6745 566.263 23.6745 10934 12.074 unclassified
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/dorado_trimming_test2.tsv Mon Nov 04 03:27:55 2024 +0000 @@ -0,0 +1,11 @@ +filename read_id run_id channel mux start_time duration template_start template_duration sequence_length_template mean_qscore_template barcode +reads.pod5 00777c4b-cbd6-4a79-8647-bbe5f5f3f3bf 473bf0edfc2f8f756173de35db5da9b6f6db4959 300 3 329.733 2.5165 329.766 2.484 1055 12.9149 unclassified +reads.pod5 0072b26f-f37c-4517-afa7-621543ac2187 473bf0edfc2f8f756173de35db5da9b6f6db4959 317 3 111.275 2.31875 111.275 2.31875 929 9.69614 unclassified +reads.pod5 0067486b-9f92-4849-8456-671463e64412 473bf0edfc2f8f756173de35db5da9b6f6db4959 84 4 164.018 2.453 164.018 2.453 885 12.399 unclassified +reads.pod5 002f231b-5d37-437f-a027-a2e8b872e73b 473bf0edfc2f8f756173de35db5da9b6f6db4959 118 3 534.745 19.5847 534.745 19.5847 8387 9.88254 unclassified +reads.pod5 0066800d-d191-4833-a495-cfe8b925aca0 473bf0edfc2f8f756173de35db5da9b6f6db4959 56 4 359.11 14.0378 359.11 14.0378 5111 9.1072 unclassified +reads.pod5 009f5efd-de5d-4a7e-9d17-969c3996cbc8 473bf0edfc2f8f756173de35db5da9b6f6db4959 230 2 171.634 3.27475 171.634 3.27475 1232 13.6258 unclassified +reads.pod5 005cf7ae-4d74-42dd-ab96-9befed842822 473bf0edfc2f8f756173de35db5da9b6f6db4959 473 2 258.872 29.436 259.165 29.1435 14587 5.17895 unclassified +reads.pod5 000a9728-0a7c-4b64-9791-76bb30b63796 473bf0edfc2f8f756173de35db5da9b6f6db4959 105 4 331.319 3.27625 331.319 3.27625 1175 12.0328 unclassified +reads.pod5 00ad521b-b916-404f-a31d-a657f9aa7756 473bf0edfc2f8f756173de35db5da9b6f6db4959 365 2 566.263 23.6745 566.263 23.6745 10934 12.074 unclassified +reads.pod5 00aeb4ba-e404-49d2-97c5-8fcf22547f81 473bf0edfc2f8f756173de35db5da9b6f6db4959 51 4 297.891 50.1888 297.984 50.0962 19142 8.45178 unclassified
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/dorado_trimming_test3.tsv Mon Nov 04 03:27:55 2024 +0000 @@ -0,0 +1,2 @@ +filename read_id run_id channel mux start_time duration template_start template_duration sequence_length_template mean_qscore_template barcode + 2f707b6e-0060-4f33-9c92-a1230d26cb21 unknown 0 0 0 0 0 0 421 0 unclassified
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/dorado_models.loc.sample Mon Nov 04 03:27:55 2024 +0000 @@ -0,0 +1,80 @@ +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_fast@v3.4 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_fast@v3.4 /models/dna_r9.4.1_e8_fast@v3.4 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_fast@v3.4_5mCG@v0.1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_fast@v3.4_5mCG@v0.1 /models/dna_r9.4.1_e8_fast@v3.4_5mCG@v0.1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_fast@v3.4_5mCG_5hmCG@v0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_fast@v3.4_5mCG_5hmCG@v0 /models/dna_r9.4.1_e8_fast@v3.4_5mCG_5hmCG@v0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_hac@v3.3 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_hac@v3.3 /models/dna_r9.4.1_e8_hac@v3.3 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_hac@v3.3_5mCG@v0.1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_hac@v3.3_5mCG@v0.1 /models/dna_r9.4.1_e8_hac@v3.3_5mCG@v0.1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_hac@v3.3_5mCG_5hmCG@v0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_hac@v3.3_5mCG_5hmCG@v0 /models/dna_r9.4.1_e8_hac@v3.3_5mCG_5hmCG@v0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_sup@v3.3 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_sup@v3.3 /models/dna_r9.4.1_e8_sup@v3.3 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_sup@v3.3_5mCG@v0.1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_sup@v3.3_5mCG@v0.1 /models/dna_r9.4.1_e8_sup@v3.3_5mCG@v0.1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_sup@v3.3_5mCG_5hmCG@v0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_sup@v3.3_5mCG_5hmCG@v0 /models/dna_r9.4.1_e8_sup@v3.3_5mCG_5hmCG@v0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r9.4.1_e8_sup@v3.6 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r9.4.1_e8_sup@v3.6 /models/dna_r9.4.1_e8_sup@v3.6 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_5khz_stereo@v1.3 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_5khz_stereo@v1.3 /models/dna_r10.4.1_e8.2_5khz_stereo@v1.3 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_260bps_fast@v4.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_260bps_fast@v4.1.0 /models/dna_r10.4.1_e8.2_260bps_fast@v4.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_260bps_fast@v4.1.0_5mCG_5hmCG@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_260bps_fast@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_260bps_fast@v4.1.0_5mCG_5hmCG@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_260bps_hac@v4.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_260bps_hac@v4.1.0 /models/dna_r10.4.1_e8.2_260bps_hac@v4.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_260bps_hac@v4.1.0_5mCG_5hmCG@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_260bps_hac@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_260bps_hac@v4.1.0_5mCG_5hmCG@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_260bps_sup@v4.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_260bps_sup@v4.1.0 /models/dna_r10.4.1_e8.2_260bps_sup@v4.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_260bps_sup@v4.1.0_5mCG_5hmCG@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_260bps_sup@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_260bps_sup@v4.1.0_5mCG_5hmCG@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_fast@v4.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_fast@v4.1.0 /models/dna_r10.4.1_e8.2_400bps_fast@v4.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_fast@v4.1.0_5mCG_5hmCG@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_fast@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_fast@v4.1.0_5mCG_5hmCG@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_fast@v4.2.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_fast@v4.2.0 /models/dna_r10.4.1_e8.2_400bps_fast@v4.2.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_fast@v4.2.0_5mCG_5hmCG@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_fast@v4.2.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_fast@v4.2.0_5mCG_5hmCG@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_fast@v4.3.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_fast@v4.3.0 /models/dna_r10.4.1_e8.2_400bps_fast@v4.3.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_fast@v5.0.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_fast@v5.0.0 /models/dna_r10.4.1_e8.2_400bps_fast@v5.0.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v4.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v4.1.0 /models/dna_r10.4.1_e8.2_400bps_hac@v4.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v4.1.0_5mCG_5hmCG@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_hac@v4.1.0_5mCG_5hmCG@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v4.3.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v4.3.0 /models/dna_r10.4.1_e8.2_400bps_hac@v4.3.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mCG_5hmCG@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mCG_5hmCG@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mCG_5hmCG@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mC_5hmC@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mC_5hmC@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mC_5hmC@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v4.3.0_6mA@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v4.3.0_6mA@v2 /models/dna_r10.4.1_e8.2_400bps_hac@v4.3.0_6mA@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v2 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v2 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v2 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v4.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v4.1.0 /models/dna_r10.4.1_e8.2_400bps_sup@v4.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v4.1.0_5mCG_5hmCG@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_sup@v4.1.0_5mCG_5hmCG@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v4.3.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v4.3.0 /models/dna_r10.4.1_e8.2_400bps_sup@v4.3.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mCG_5hmCG@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mCG_5hmCG@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mCG_5hmCG@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mC_5hmC@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mC_5hmC@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mC_5hmC@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v4.3.0_6mA@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v4.3.0_6mA@v2 /models/dna_r10.4.1_e8.2_400bps_sup@v4.3.0_6mA@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v2 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v2.0.1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v2.0.1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v2.0.1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v2.0.1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v2.0.1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v2.0.1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v2 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v2 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v2 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_dna_r10.4.1_e8.2_apk_sup@v5.0.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 dna_r10.4.1_e8.2_apk_sup@v5.0.0 /models/dna_r10.4.1_e8.2_apk_sup@v5.0.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna002_70bps_fast@v3 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna002_70bps_fast@v3 /models/rna002_70bps_fast@v3 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna002_70bps_hac@v3 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna002_70bps_hac@v3 /models/rna002_70bps_hac@v3 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_fast@v3.0.1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_fast@v3.0.1 /models/rna004_130bps_fast@v3.0.1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_fast@v5.0.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_fast@v5.0.0 /models/rna004_130bps_fast@v5.0.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_fast@v5.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_fast@v5.1.0 /models/rna004_130bps_fast@v5.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v3.0.1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v3.0.1 /models/rna004_130bps_hac@v3.0.1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.0.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.0.0 /models/rna004_130bps_hac@v5.0.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.0.0_m6A@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.0.0_m6A@v1 /models/rna004_130bps_hac@v5.0.0_m6A@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.0.0_m6A_DRACH@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.0.0_m6A_DRACH@v1 /models/rna004_130bps_hac@v5.0.0_m6A_DRACH@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.0.0_pseU@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.0.0_pseU@v1 /models/rna004_130bps_hac@v5.0.0_pseU@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.1.0 /models/rna004_130bps_hac@v5.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.1.0_inosine_m6A@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.1.0_inosine_m6A@v1 /models/rna004_130bps_hac@v5.1.0_inosine_m6A@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.1.0_m5C@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.1.0_m5C@v1 /models/rna004_130bps_hac@v5.1.0_m5C@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.1.0_m6A_DRACH@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.1.0_m6A_DRACH@v1 /models/rna004_130bps_hac@v5.1.0_m6A_DRACH@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_hac@v5.1.0_pseU@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_hac@v5.1.0_pseU@v1 /models/rna004_130bps_hac@v5.1.0_pseU@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v3.0.1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v3.0.1 /models/rna004_130bps_sup@v3.0.1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v3.0.1_m6A_DRACH@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v3.0.1_m6A_DRACH@v1 /models/rna004_130bps_sup@v3.0.1_m6A_DRACH@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.0.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.0.0 /models/rna004_130bps_sup@v5.0.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.0.0_m6A@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.0.0_m6A@v1 /models/rna004_130bps_sup@v5.0.0_m6A@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.0.0_m6A_DRACH@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.0.0_m6A_DRACH@v1 /models/rna004_130bps_sup@v5.0.0_m6A_DRACH@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.0.0_pseU@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.0.0_pseU@v1 /models/rna004_130bps_sup@v5.0.0_pseU@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.1.0 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.1.0 /models/rna004_130bps_sup@v5.1.0 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.1.0_inosine_m6A@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.1.0_inosine_m6A@v1 /models/rna004_130bps_sup@v5.1.0_inosine_m6A@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.1.0_m5C@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.1.0_m5C@v1 /models/rna004_130bps_sup@v5.1.0_m5C@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.1.0_m6A_DRACH@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.1.0_m6A_DRACH@v1 /models/rna004_130bps_sup@v5.1.0_m6A_DRACH@v1 +ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29_rna004_130bps_sup@v5.1.0_pseU@v1 ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29 rna004_130bps_sup@v5.1.0_pseU@v1 /models/rna004_130bps_sup@v5.1.0_pseU@v1
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Mon Nov 04 03:27:55 2024 +0000 @@ -0,0 +1,6 @@ +<tables> + <table name="dorado_models" comment_char="#"> + <columns>value, tool_version, name, path</columns> + <file path="tool-data/dorado_models.loc" /> + </table> +</tables> \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.test Mon Nov 04 03:27:55 2024 +0000 @@ -0,0 +1,6 @@ +<tables> + <table name="dorado_models" comment_char="#"> + <columns>value, tool_version, name, path</columns> + <file path="${__HERE__}/test-data/dorado_models.loc" /> + </table> +</tables> \ No newline at end of file