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comparison test-data/01/combined/txt/mzTab.mzTab @ 12:0839f84def5e draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
author galaxyp
date Sun, 20 Jun 2021 16:37:41 +0000
parents dcd39bcc7481
children 8934bc76bb52
comparison
equal deleted inserted replaced
11:d72c96ad9a16 12:0839f84def5e
1 MTD mzTab-version 1.0.0 1 MTD mzTab-version 1.0.0
2 MTD mzTab-mode Complete 2 MTD mzTab-mode Complete
3 MTD mzTab-type Identification 3 MTD mzTab-type Identification
4 MTD title null 4 MTD title null
5 MTD description null 5 MTD description null
6 MTD software[1] [MS, MS:1001583, MaxQuant,1.6.10.43] 6 MTD software[1] [MS, MS:1001583, MaxQuant,1.6.17.0]
7 COM [, CHEMMOD:57.0214637236, Carbamidomethyl (C),] 7 COM [, CHEMMOD:57.0214637236, Carbamidomethyl (C),]
8 MTD fixed_mod[1] [, , CHEMMOD:57.0214637236,] 8 MTD fixed_mod[1] [, , CHEMMOD:57.0214637236,]
9 MTD fixed_mod[1]-site C 9 MTD fixed_mod[1]-site C
10 MTD fixed_mod[1]-position Anywhere 10 MTD fixed_mod[1]-position Anywhere
11 COM [, CHEMMOD:15.9949146221, Oxidation (M),] 11 COM [, CHEMMOD:15.9949146221, Oxidation (M),]
12 MTD variable_mod[1] [, , CHEMMOD:15.9949146221,] 12 MTD variable_mod[1] [, , CHEMMOD:15.9949146221,]
13 MTD variable_mod[1]-site M 13 MTD variable_mod[1]-site M
14 MTD variable_mod[1]-position Anywhere 14 MTD variable_mod[1]-position Anywhere
15 MTD protein_search_engine_score[1] [MS, MS:1002375, protein group-level combined FDRscore, ] 15 MTD protein_search_engine_score[1] [MS, MS:1002375, protein group-level combined FDRscore, ]
16 MTD peptide_search_engine_score[1] [MS, MS:1001250, local FDR, ] 16 MTD peptide_search_engine_score[1] [MS, MS:1001250, local FDR, ]
17 MTD psm_search_engine_score[1] [MS, MS:1002338, Andromeda:score, ] 17 MTD psm_search_engine_score[1] [MS, MS:1002338, Andromeda:score, ]
18 MTD psm_search_engine_score[2] [MS, MS:1002995, Andromeda:PEP, ] 18 MTD psm_search_engine_score[2] [MS, MS:1002995, Andromeda PEP, ]
19 MTD ms_run[1]-format [MS, MS:1002996, Andromeda:apl file format, ] 19 MTD ms_run[1]-format [MS, , ,]
20 MTD ms_run[1]-location file://d:/shared/dglaetzer/maxquant_tool/test1/combined/andromeda/allspectra.cid.ftms.secpep.sil0_0.apl 20 MTD ms_run[1]-location file:///tmp/tmp9jbmb6lc/job_working_directory/000/3/working/BSA_min_23.mzXML
21 MTD ms_run[1]-id_format [MS, MS:1000776, scan number only nativeID format, ] 21 MTD ms_run[1]-id_format [MS, , ,]
22 MTD ms_run[2]-format [MS, MS:1002996, Andromeda:apl file format, ]
23 MTD ms_run[2]-location file://d:/shared/dglaetzer/maxquant_tool/test1/combined/andromeda/allspectra.cid.ftms.iso_0.apl
24 MTD ms_run[2]-id_format [MS, MS:1000776, scan number only nativeID format, ]
25 22
26 PRH accession description taxid species database database_version search_engine best_search_engine_score[1] search_engine_score[1]_ms_run[1] search_engine_score[1]_ms_run[2] num_psms_ms_run[1] num_psms_ms_run[2] num_peptides_distinct_ms_run[1] num_peptides_distinct_ms_run[2] num_peptides_unique_ms_run[1] num_peptides_unique_ms_run[2] ambiguity_members modifications protein_coverage opt_global_cv_MS:1002217_decoy_peptide 23 PRH accession description taxid species database database_version search_engine best_search_engine_score[1] search_engine_score[1]_ms_run[1] num_psms_ms_run[1] num_peptides_distinct_ms_run[1] num_peptides_unique_ms_run[1] ambiguity_members modifications protein_coverage
27 PRT CON__P02769 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 6.22453365714539 null null null null null null null null CON__P02769, bsa, CON__P02768-1 null 0.012 0 24 PRT CON__P02769 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 6.33205607832812 null null null null CON__P02769, bsa, CON__P02768-1 null 0.012
28 PRT CON__ENSEMBL:ENSBTAP00000001528 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 7.46941253488722 null null null null null null null null CON__ENSEMBL:ENSBTAP00000001528 null 0.008 0 25 PRT CON__ENSEMBL:ENSBTAP00000001528 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 5.93746772688895 null null null null CON__ENSEMBL:ENSBTAP00000001528 null 0.008
29 PRT CON__ENSEMBL:ENSBTAP00000016046 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 8.04777465053044 null null null null null null null null CON__ENSEMBL:ENSBTAP00000016046 null 0.01 0 26 PRT CON__ENSEMBL:ENSBTAP00000016046 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 5.97677849538172 null null null null CON__ENSEMBL:ENSBTAP00000016046 null 0.01
30 PRT CON__ENSEMBL:ENSBTAP00000018574 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 7.73737648138078 null null null null null null null null CON__ENSEMBL:ENSBTAP00000018574 null 0.016 0 27 PRT CON__ENSEMBL:ENSBTAP00000018574 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 5.95544937626172 null null null null CON__ENSEMBL:ENSBTAP00000018574 null 0.016
31 PRT CON__P50446 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 6.03764269117454 null null null null null null null null CON__P50446 null 0.025 0 28 PRT CON__Q03247 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 5.93746772688895 null null null null CON__Q03247 null 0.025
32 PRT CON__Q03247 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 5.81086493552667 null null null null null null null null CON__Q03247 null 0.025 0 29 PRT CON__Q14CN4-1 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 6.1237531147968 null null null null CON__Q14CN4-1, CON__Q3SY84, CON__Q9R0H5 null 0.016
33 PRT CON__Q14CN4-1 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 5.99478997658237 null null null null null null null null CON__Q14CN4-1, CON__Q3SY84, CON__Q9R0H5 null 0.016 0
34 30
35 PSH sequence PSM_ID accession unique database database_version search_engine search_engine_score[1] search_engine_score[2] modifications retention_time charge exp_mass_to_charge calc_mass_to_charge spectra_ref pre post start end opt_global_cv_MS:1000776_scan_number_only_nativeID_format opt_global_cv_MS:1002217_decoy_peptide 31 PSH sequence PSM_ID accession unique database database_version search_engine search_engine_score[1] search_engine_score[2] modifications retention_time charge exp_mass_to_charge calc_mass_to_charge spectra_ref pre post start end opt_global_cv_MS:1000776_scan_number_only_nativeID_format opt_global_cv_MS:1002217_decoy_peptide
36 PSM DSFDIIK 1 CON__ENSEMBL:ENSBTAP00000016046 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 8.95829478642414E-05 null 0.570428333333333 2 419.22 419.22127 ms_run[2]:index=5 R R 646 652 96 0 32 PSM DSFDIIK 1 CON__ENSEMBL:ENSBTAP00000016046 1 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.010549248059121 null 0.570428333333333 2 419.2213 419.2213 ms_run[1]:scan=96 R R 646 652 96 0
37 PSM LLESEECR 2 CON__Q14CN4-1 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 1.63126590808724 0.0101206876914345 null 0.509571666666667 2 518.24 518.24241 ms_run[2]:index=13 K M 430 437 86 0 33 PSM LLESEECR 2 CON__Q14CN4-1 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0
38 PSM LLESEECR 2 CON__Q3SY84 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 1.63126590808724 0.0101206876914345 null 0.509571666666667 2 518.24 518.24241 ms_run[2]:index=13 K M 430 437 86 0 34 PSM LLESEECR 2 CON__Q3SY84 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0
39 PSM LLESEECR 2 CON__Q9R0H5 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 1.63126590808724 0.0101206876914345 null 0.509571666666667 2 518.24 518.24241 ms_run[2]:index=13 K M 430 437 86 0 35 PSM LLESEECR 2 CON__Q9R0H5 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0
40 PSM LVTDLTK 3 CON__P02769 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00596302105559693 null 0.0100133333333333 2 395.24 395.23946 ms_run[2]:index=4 K V 257 263 2 0 36 PSM LVTDLTK 3 CON__P02769 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0
41 PSM LVTDLTK 3 bsa 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00596302105559693 null 0.0100133333333333 2 395.24 395.23946 ms_run[2]:index=4 K V 257 263 2 0 37 PSM LVTDLTK 3 bsa 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0
42 PSM LVTDLTK 3 CON__P02768-1 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00596302105559693 null 0.0100133333333333 2 395.24 395.23946 ms_run[2]:index=4 K V 257 263 2 0 38 PSM LVTDLTK 3 CON__P02768-1 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0
43 PSM QLELEKQLEK 4 CON__ENSEMBL:ENSBTAP00000001528 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00033930281684504 null 0.304175 2 629.36 629.35608 ms_run[2]:index=31 R Q 408 417 52 0 39 PSM QLELEKQLEK 4 CON__ENSEMBL:ENSBTAP00000001528 1 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.0115486780155693 null 0.570428333333333 3 419.9065 419.9065 ms_run[1]:scan=96 R Q 408 417 96 0
44 PSM QLELEKQLEK 5 CON__ENSEMBL:ENSBTAP00000001528 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00033930281684504 null 0.487221666666667 2 629.36 629.35608 ms_run[2]:index=30 R Q 408 417 82 0 40 PSM SLSAIRER 5 CON__Q03247 1 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.0115486780155693 null 0.0965533333333333 2 466.2696 466.2696 ms_run[1]:scan=17 R F 190 197 17 0
45 PSM QLELEKQLEK 6 CON__ENSEMBL:ENSBTAP00000001528 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.015457350844535 null 0.570428333333333 3 419.91 419.90648 ms_run[1]:index=5 R Q 408 417 96 0 41 PSM TLGPWGQR 6 CON__ENSEMBL:ENSBTAP00000018574 1 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.0110802771561295 null 0.425933333333333 2 457.746 457.7458 ms_run[1]:scan=72 R D 20 27 72 0
46 PSM SLSAIRER 7 CON__Q03247 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.015457350844535 null 0.0965533333333333 2 466.27 466.26962 ms_run[1]:index=2 R F 190 197 17 0
47 PSM SQTSHRGYSASSAR 8 CON__P50446 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00916974606023747 null 0.309418333333333 2 747.86 747.85583 ms_run[2]:index=48 K V 9 22 53 0
48 PSM TLGPWGQR 9 CON__ENSEMBL:ENSBTAP00000018574 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.000183072671316044 null 0.425933333333333 2 457.75 457.74578 ms_run[2]:index=9 R D 20 27 72 0
49 42