annotate gmql_operators_map.xml @ 0:a80c93182db3 draft default tip

planemo upload for repository https://github.com/lu-brn/gmql-galaxy commit 953ee36ceda5814dc9baa03427bc0eb4ee2e93bd-dirty

<macros>
    <import>gmql_queries_macros.xml</import>
    <xml name="map">
        <expand macro="input_var" name="input_var_reference" label="Reference Dataset" optional="false" />
        <expand macro="input_var" name="input_var_experiment" label="Experiment Dataset" optional="false" />
        <expand macro="output_var" />
        <param name="count_result" type="text" label="Rename default counting attribute name"
               help="The MAP operation always counts the number of each experiment sample region intersecting a certain reference region;
               Results are stored by default in an attribute named count_[DSrefName]_[DSexpName]."
               optional="true">
            <expand macro="text_val" />
        </param>
        <section name="new_regions_attributes" title="New Genomic Region Attributes" expanded="false">
            <repeat name="new_regions" title="Add New Region Attribute to Result Dataset" min="0" default="0"
                    help="Create new genomic region attributes by using functions on existing experiment region attributes">
                <param name="new_name" type="text" label="New Region Attribute Name" optional="true">
                    <expand macro="text_val"/>
                </param>
                <expand macro="aggrFuncs" help="Sum, average, maximum, minimum and standard deviation are only for numerical
                attributes" optional="true" label="Aggregate Function to apply"/>
                <param name="argument" label="Region attributes over which apply function" type="text" optional="true">
                    <expand macro="text_val"/>
                </param>
            </repeat>
        </section>
        <section name="joinby" title="Condition on Samples Metadata" expanded="false"
        help="A list of metadata attribute names (or their suffixes) that must be present with equal values in the metadata of
              the reference and experiment samples.">
        <repeat name="joinby_clause" title="Attributes to match" min="0" default="0" >
            <expand macro="metajoin_attribute" name="j_att" optional="true" >
                <expand macro="metajoin_options" />
            </expand>
        </repeat>
        </section>
        <expand macro="materialize_stm" />
    </xml>
</macros>