diff gmql_operators_map.xml @ 0:a80c93182db3 draft default tip

planemo upload for repository https://github.com/lu-brn/gmql-galaxy commit 953ee36ceda5814dc9baa03427bc0eb4ee2e93bd-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/gmql_operators_map.xml	Tue Jun 26 09:08:06 2018 -0400
@@ -0,0 +1,37 @@
+<macros>
+    <import>gmql_queries_macros.xml</import>
+    <xml name="map">
+        <expand macro="input_var" name="input_var_reference" label="Reference Dataset" optional="false" />
+        <expand macro="input_var" name="input_var_experiment" label="Experiment Dataset" optional="false" />
+        <expand macro="output_var" />
+        <param name="count_result" type="text" label="Rename default counting attribute name"
+               help="The MAP operation always counts the number of each experiment sample region intersecting a certain reference region;
+               Results are stored by default in an attribute named count_[DSrefName]_[DSexpName]."
+               optional="true">
+            <expand macro="text_val" />
+        </param>
+        <section name="new_regions_attributes" title="New Genomic Region Attributes" expanded="false">
+            <repeat name="new_regions" title="Add New Region Attribute to Result Dataset" min="0" default="0"
+                    help="Create new genomic region attributes by using functions on existing experiment region attributes">
+                <param name="new_name" type="text" label="New Region Attribute Name" optional="true">
+                    <expand macro="text_val"/>
+                </param>
+                <expand macro="aggrFuncs" help="Sum, average, maximum, minimum and standard deviation are only for numerical
+                attributes" optional="true" label="Aggregate Function to apply"/>
+                <param name="argument" label="Region attributes over which apply function" type="text" optional="true">
+                    <expand macro="text_val"/>
+                </param>
+            </repeat>
+        </section>
+        <section name="joinby" title="Condition on Samples Metadata" expanded="false"
+        help="A list of metadata attribute names (or their suffixes) that must be present with equal values in the metadata of
+              the reference and experiment samples.">
+        <repeat name="joinby_clause" title="Attributes to match" min="0" default="0" >
+            <expand macro="metajoin_attribute" name="j_att" optional="true" >
+                <expand macro="metajoin_options" />
+            </expand>
+        </repeat>
+        </section>
+        <expand macro="materialize_stm" />
+    </xml>
+</macros>
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