Mercurial > repos > greg > cfsan_snp_pipeline_call_sites
changeset 2:991fbae39ee6 draft
Uploaded
| author | greg |
|---|---|
| date | Wed, 22 Nov 2023 14:10:59 +0000 |
| parents | 9ab66ea409ff |
| children | 5bfc9e1ce9e9 |
| files | .shed.yml cfsan_snp_pipeline_call_sites.xml |
| diffstat | 2 files changed, 9 insertions(+), 3 deletions(-) [+] |
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--- a/.shed.yml Tue Nov 21 22:08:55 2023 +0000 +++ b/.shed.yml Wed Nov 22 14:10:59 2023 +0000 @@ -1,7 +1,7 @@ name: cfsan_snp_pipeline_call_sites owner: greg -description: Wrapper for picard MarkDuplicate, samtools mpileup and varscan mpileup2snp -long_description: Wrapper for picard MarkDuplicate, samtools mpileup and varscan mpileup2snp +description: Find the sites with high-confidence SNPs in a sample. +long_description: Find the sites with high-confidence SNPs in a sample. categories: - Metagenomics remote_repository_url: https://github.com/gregvonkuster/galaxy_tools/tree/master/snp_pipeline/cfsan_snp_pipeline_call_sites
--- a/cfsan_snp_pipeline_call_sites.xml Tue Nov 21 22:08:55 2023 +0000 +++ b/cfsan_snp_pipeline_call_sites.xml Wed Nov 22 14:10:59 2023 +0000 @@ -36,7 +36,13 @@ </test> </tests> <help><![CDATA[ - <a href="http://snp-pipeline.readthedocs.io/en/latest/index.html">http://snp-pipeline.readthedocs.io/en/latest/index.html</a> +**What it does** + +Finds the sites with high-confidence SNPs in a sample. + +**More information** + +CFSAN SNP Pipeline `call consensus documentation <https://snp-pipeline.readthedocs.io/en/latest/cmd_ref.html#call-consensus>`_ ]]></help> <expand macro="citations"/> </tool>