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1 name: cfsan_snp_pipeline_snp_matrix
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2 owner: greg
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3 description: Create the SNP matrix containing the consensus base for each of the samples at
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4 the positions where high-confidence SNPs were found in any of the samples.
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5 long_description: Create the SNP matrix containing the consensus base for each of the samples at
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6 the positions where high-confidence SNPs were found in any of the samples. The
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7 matrix contains one row per sample and one column per SNP position. Non-SNP
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8 positions are not included in the matrix. The matrix is formatted as a fasta
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9 file, with each sequence (all of identical length) corresponding to the SNPs
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10 in the correspondingly named sequence.
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11 categories:
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12 - Metagenomics
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13 remote_repository_url: https://github.com/gregvonkuster/galaxy_tools/tree/master/snp_pipeline/cfsan_snp_pipeline_snp_matrix
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14 homepage_url: https://github.com/gregvonkuster/galaxy_tools
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15 type: unrestricted
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