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1 #!/bin/bash
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2
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3 newsign=$1
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4 html=$2
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5 ref=$3
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6
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7 output_dir=${html%%.*}_files
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8
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9 matrix=${newsign%.*}_files/NMF/Files/MatrixW-Normto100.txt
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10
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11 mkdir $output_dir
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12
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13 Rscript --no-save $SCRIPT_PATH/R/compareSignature_Galaxy.r $ref $matrix $output_dir 2>&1
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14
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15 # Convert the image into png format
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16 cd $output_dir
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17
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18 echo "<html><body>" >> $html
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19 echo "<center> <h2> Cosine similarity comparison </h2> </center>" >> $html
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20
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21 echo "<table>" >> $html
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22 echo "<tr> <td> <center> <br/> <a href="Similarity_Matrix.txt">Similarity_Matrix.txt</a> </center> </td> </tr>" >> $html
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23 echo "<tr>" >> $html
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24 echo "<td><a href="Similarity_Matrix.png">" >> $html
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25 echo "<img width="1000" src="Similarity_Matrix.png" /></a></td>" >> $html
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26 echo "</tr>" >> $html
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27 echo "</table>" >> $html
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28
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29 exit 0
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