diff mergeneighboursinlabelimage.xml @ 0:07ac39c0e949 draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mergeneighboursinlabelimage.xml	Sat Feb 09 14:38:38 2019 -0500
@@ -0,0 +1,34 @@
+<tool id="ip_merge_neighbours_in_label" name="Merge Neighbours in Label" version="0.2">
+    <description>Merge Neighbours in Label Image</description>
+    <requirements>
+        <requirement type="package" version="0.14.2">scikit-image</requirement>
+        <requirement type="package" version="1.15.4">numpy</requirement>
+    </requirements>
+    <command>
+        <![CDATA[
+        python '$__tool_directory__/mergeneighboursinlabelimage.py' '$input' ./tmp.tiff -c $c
+        ]]>
+    </command>
+    <inputs>
+        <param name="input" type="data" format="tiff,png,jpg,bmp" label="Label Image File"/>
+        <param  label="Distance in pixel of objects which are merged" name="c" type="integer" value="50"/>
+    </inputs>
+    <outputs>
+        <data format="tiff" name="output" from_work_dir="tmp.tiff"/>
+    </outputs>
+    <tests>
+        <test>
+          <param name="input" value="galaxyIcon_noText.tif"/>
+          <param name="c" value="10"/>
+          <output name="output" file="out.tiff" ftype="tiff" compare="sim_size"/>
+        </test>
+    </tests>
+    <help>
+    **What it does**
+
+    This tools merges nearby objects in a label image using the minimum pixel distance.
+    </help>
+    <citations>
+        <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
+    </citations>
+</tool>