view mergeneighboursinlabelimage.xml @ 0:07ac39c0e949 draft

planemo upload for repository\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author imgteam
date Sat, 09 Feb 2019 14:38:38 -0500
children c6a6ab7c9940
line wrap: on
line source

<tool id="ip_merge_neighbours_in_label" name="Merge Neighbours in Label" version="0.2">
    <description>Merge Neighbours in Label Image</description>
        <requirement type="package" version="0.14.2">scikit-image</requirement>
        <requirement type="package" version="1.15.4">numpy</requirement>
        python '$__tool_directory__/' '$input' ./tmp.tiff -c $c
        <param name="input" type="data" format="tiff,png,jpg,bmp" label="Label Image File"/>
        <param  label="Distance in pixel of objects which are merged" name="c" type="integer" value="50"/>
        <data format="tiff" name="output" from_work_dir="tmp.tiff"/>
          <param name="input" value="galaxyIcon_noText.tif"/>
          <param name="c" value="10"/>
          <output name="output" file="out.tiff" ftype="tiff" compare="sim_size"/>
    **What it does**

    This tools merges nearby objects in a label image using the minimum pixel distance.
        <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>