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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3
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3 <package name="ngchm" version="1.2">
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4 <install version="1.0">
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5 <actions>
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6 <action type="shell_command">cd $GALAXY_ROOT_DIR</action>
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7 <action type="shell_command">hg clone https://insilico-bob@toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm</action>
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8 <action type="shell_command">mkdir -p -m 777 $GALAXY_ROOT_DIR/test-data/MDAheatmap</action>
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9 <action type="move_directory_files">
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10 <source_directory>./TestFiles</source_directory>
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11 <destination_directory>$GALAXY_ROOT_DIR/test-data/MDAheatmap</destination_directory>
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12 </action>
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13 <action type="shell_command">mkdir -p -m 777 $GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap/</action>
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14 <action type="move_directory_files">
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15 <source_directory>./MDAheatmap/</source_directory>
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16 <destination_directory>$GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap/</destination_directory>
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17 </action>
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18 <action type="shell_command">cd $GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap/templates</action>
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19 <action type="shell_command">make</action>
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20 </actions>
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21 </install>
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22 <readme>Completed adding MDAnderson ngchm tool to Galaxy</readme>
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23 </package>
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24 </tool_dependency>
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