Mercurial > repos > insilico-bob > ngchm_dependencies

comparison tool_dependencies.xml @ 5:1abdad49a3ec draft

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Uploaded
author insilico-bob
date Fri, 06 Jan 2017 15:57:48 -0500
parents d3d47c77ec79
children 87bb8c831da5
comparison
equal deleted inserted replaced
4:d3d47c77ec79 5:1abdad49a3ec
1 <tool_dependency > 1 <tool_dependency >
2 <!-- https://wiki.galaxyproject.org/ToolDependenciesTagSets --> 2 <!-- https://wiki.galaxyproject.org/ToolDependenciesTagSets -->
3 <actions> 3 <actions>
4 <action type="shell_command">echo 'starting tool dependency script'</action> 4 <action type="shell_command">echo 'starting tool dependency script'</action>
5 <action type="change_directory">/shed_tools/toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm_dependencies/*/ngchm_dependencies/</action> 5 <action type="change_directory">/shed_tools/toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm_dependencies/*/ngchm_dependencies/</action>
6 <action type="chmod"><file mode="755">./MDAHeatmap/*</file></action> 6 <action type="chmod"><file mode="755">./mda_heatmap_viz/*</file></action>
7 <!--##### Place MDA software in Tools and Visualization directories ##### --> 7 <!--##### Place MDA software in Tools and Visualization directories ##### -->
8 <action type="shell_command">echo 'Place MD Anderson test input and output files in ~/test-data directory'</action> 8 <action type="shell_command">echo 'Place MD Anderson test input and output files in ~/test-data directory'</action>
9 <action type="shell_command">mkdir $GALAXY_ROOT/config/plugins/visualizations/mda_heatmap_viz/</action> 9 <action type="shell_command">mkdir $GALAXY_ROOT/config/plugins/visualizations/mda_heatmap_viz/</action>
10 <action type="move_directory_files"><source_directory>./MDAHeatmap/</source_directory><destination_directory>$GALAXY_ROOT/config/plugins/visualizations/mda_heatmap_viz/</destination_directory></action> 10 <action type="move_directory_files"><source_directory>./mda_heatmap_viz/</source_directory><destination_directory>$GALAXY_ROOT/config/plugins/visualizations/mda_heatmap_viz/</destination_directory></action>
11 <!-- ##### Place MD Anderson test input and output files in ~/test-data directory ##### --> 11 <!-- ##### Place MD Anderson test input and output files in ~/test-data directory ##### -->
12 <action type="shell_command">echo 'Place MD Anderson software in test data directories'</action> 12 <action type="shell_command">echo 'Place MD Anderson software in test data directories'</action>
13 <action type="move_directory_files"><source_directory>./TestFiles/</source_directory><destination_directory>$GALAXY_ROOT/test-data/</destination_directory></action> 13 <action type="move_directory_files"><source_directory>./TestFiles/</source_directory><destination_directory>$GALAXY_ROOT/test-data/</destination_directory></action>
14 </actions> 14 </actions>
15 </tool_dependency> 15 </tool_dependency>