Mercurial > repos > insilico-bob > ngchm_dependencies
comparison tool_dependencies.xml @ 5:1abdad49a3ec draft
Uploaded
author | insilico-bob |
---|---|
date | Fri, 06 Jan 2017 15:57:48 -0500 |
parents | d3d47c77ec79 |
children | 87bb8c831da5 |
comparison
equal
deleted
inserted
replaced
4:d3d47c77ec79 | 5:1abdad49a3ec |
---|---|
1 <tool_dependency > | 1 <tool_dependency > |
2 <!-- https://wiki.galaxyproject.org/ToolDependenciesTagSets --> | 2 <!-- https://wiki.galaxyproject.org/ToolDependenciesTagSets --> |
3 <actions> | 3 <actions> |
4 <action type="shell_command">echo 'starting tool dependency script'</action> | 4 <action type="shell_command">echo 'starting tool dependency script'</action> |
5 <action type="change_directory">/shed_tools/toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm_dependencies/*/ngchm_dependencies/</action> | 5 <action type="change_directory">/shed_tools/toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm_dependencies/*/ngchm_dependencies/</action> |
6 <action type="chmod"><file mode="755">./MDAHeatmap/*</file></action> | 6 <action type="chmod"><file mode="755">./mda_heatmap_viz/*</file></action> |
7 <!--##### Place MDA software in Tools and Visualization directories ##### --> | 7 <!--##### Place MDA software in Tools and Visualization directories ##### --> |
8 <action type="shell_command">echo 'Place MD Anderson test input and output files in ~/test-data directory'</action> | 8 <action type="shell_command">echo 'Place MD Anderson test input and output files in ~/test-data directory'</action> |
9 <action type="shell_command">mkdir $GALAXY_ROOT/config/plugins/visualizations/mda_heatmap_viz/</action> | 9 <action type="shell_command">mkdir $GALAXY_ROOT/config/plugins/visualizations/mda_heatmap_viz/</action> |
10 <action type="move_directory_files"><source_directory>./MDAHeatmap/</source_directory><destination_directory>$GALAXY_ROOT/config/plugins/visualizations/mda_heatmap_viz/</destination_directory></action> | 10 <action type="move_directory_files"><source_directory>./mda_heatmap_viz/</source_directory><destination_directory>$GALAXY_ROOT/config/plugins/visualizations/mda_heatmap_viz/</destination_directory></action> |
11 <!-- ##### Place MD Anderson test input and output files in ~/test-data directory ##### --> | 11 <!-- ##### Place MD Anderson test input and output files in ~/test-data directory ##### --> |
12 <action type="shell_command">echo 'Place MD Anderson software in test data directories'</action> | 12 <action type="shell_command">echo 'Place MD Anderson software in test data directories'</action> |
13 <action type="move_directory_files"><source_directory>./TestFiles/</source_directory><destination_directory>$GALAXY_ROOT/test-data/</destination_directory></action> | 13 <action type="move_directory_files"><source_directory>./TestFiles/</source_directory><destination_directory>$GALAXY_ROOT/test-data/</destination_directory></action> |
14 </actions> | 14 </actions> |
15 </tool_dependency> | 15 </tool_dependency> |