4
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1 <tool_dependency >
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2 <!-- https://wiki.galaxyproject.org/ToolDependenciesTagSets -->
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3 <actions>
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4 <action type="shell_command">echo 'starting tool dependency script'</action>
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5 <action type="change_directory">/shed_tools/toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm_dependencies/*/ngchm_dependencies/</action>
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5
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6 <action type="chmod"><file mode="755">./mda_heatmap_viz/*</file></action>
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4
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7 <!--##### Place MDA software in Tools and Visualization directories ##### -->
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8 <action type="shell_command">echo 'Place MD Anderson test input and output files in ~/test-data directory'</action>
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9 <action type="shell_command">mkdir $GALAXY_ROOT/config/plugins/visualizations/mda_heatmap_viz/</action>
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5
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10 <action type="move_directory_files"><source_directory>./mda_heatmap_viz/</source_directory><destination_directory>$GALAXY_ROOT/config/plugins/visualizations/mda_heatmap_viz/</destination_directory></action>
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4
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11 <!-- ##### Place MD Anderson test input and output files in ~/test-data directory ##### -->
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12 <action type="shell_command">echo 'Place MD Anderson software in test data directories'</action>
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13 <action type="move_directory_files"><source_directory>./TestFiles/</source_directory><destination_directory>$GALAXY_ROOT/test-data/</destination_directory></action>
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14 </actions>
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2
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15 </tool_dependency>
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