Mercurial > repos > insilico-bob > ngchm_dependencies
view tool_dependencies.xml @ 5:1abdad49a3ec draft
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author | insilico-bob |
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date | Fri, 06 Jan 2017 15:57:48 -0500 |
parents | d3d47c77ec79 |
children | 87bb8c831da5 |
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<tool_dependency > <!-- https://wiki.galaxyproject.org/ToolDependenciesTagSets --> <actions> <action type="shell_command">echo 'starting tool dependency script'</action> <action type="change_directory">/shed_tools/toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm_dependencies/*/ngchm_dependencies/</action> <action type="chmod"><file mode="755">./mda_heatmap_viz/*</file></action> <!--##### Place MDA software in Tools and Visualization directories ##### --> <action type="shell_command">echo 'Place MD Anderson test input and output files in ~/test-data directory'</action> <action type="shell_command">mkdir $GALAXY_ROOT/config/plugins/visualizations/mda_heatmap_viz/</action> <action type="move_directory_files"><source_directory>./mda_heatmap_viz/</source_directory><destination_directory>$GALAXY_ROOT/config/plugins/visualizations/mda_heatmap_viz/</destination_directory></action> <!-- ##### Place MD Anderson test input and output files in ~/test-data directory ##### --> <action type="shell_command">echo 'Place MD Anderson software in test data directories'</action> <action type="move_directory_files"><source_directory>./TestFiles/</source_directory><destination_directory>$GALAXY_ROOT/test-data/</destination_directory></action> </actions> </tool_dependency>