changeset 0:51f7c347c955

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Mar 04 00:52:52 2013 -0500
@@ -0,0 +1,29 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="galaxy_protk" version="1.1.9">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
+                <action type="shell_command">sh install_protk.sh 1.1.9</action>
+                <action type="move_file">
+                    <source>install_protk.sh</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$HOME/.rvm/bin/</environment_variable>
+                </action>                
+            </actions>
+        </install>
+        <readme>
+            This package installs the protk rubygem which provides facilities for running various proteomics tools via galaxy. 
+
+            Installation of this package requires that you have the following packages (or equivalents) installed gcc g++ patch zlib zlib-devel libyaml-devel libffi-devel  openssl-devel  make  bzip2  autoconf  automake  libtool  bison  iconv-devel libxml2 libxml2-devel zlib zlib-devel bzip2 make
+
+            For more about protk see https://bitbucket.org/iracooke/protk
+
+            In order to install ruby and the protk rubygem this package will install rvm (http://rvm.io) to the home directory of your galaxy user at ~/.rvm (if rvm is not already installed). 
+            The protk rubygem is installed in its own gemset and will not interfere with other ruby installations or ruby gems
+        </readme>
+    </package>
+</tool_dependency>
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