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view tool-data/mascot_databases.loc.sample @ 3:255b5b6ec617 draft default tip

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Better defaults for omssa
author Ira Cooke <iracooke@gmail.com>
date Mon, 23 Jul 2012 14:48:31 +1000
parents a929e27eb203
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#This file lists the names of protein databases installed on Mascot
#
#In order to use interprophet to combine results from different search engines
#it is important that all searches are performed on the same database
#you should therefore ensure that each database installed on mascot has an equivalent
#database installed in the Protk databases directory (databases used by omssa and x!tandem)
#the mascot_to_pepxml tool will ask for this database when performing the conversion.
#
# Entries should follow the be structured as follows
# Display_name dbkey dbNameOnMascot dbkey
#
Swissprot	spall_	SPAll	spall_
Swissprot Human	sphuman_	SPHuman	sphuman_