changeset 1:0d86d29aaed6

Added a readme

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README	Mon Mar 04 23:56:17 2013 -0500
@@ -0,0 +1,42 @@
+This package is an installer for BLAST+ from NCBI
+
+Requirements:
+This package depends on the galaxy_protk package
+Please see instructions for the galaxy_protk package before installing
+
+-------- ABOUT --------------
+
+BLAST Command Line Applications
+
+The NCBI Basic Local Alignment Search Tool (BLAST) finds regions of
+local similarity between sequences. The program compares nucleotide or
+protein sequences to sequence databases and calculates the statistical
+significance of matches. BLAST can be used to infer functional and
+evolutionary relationships between sequences as well as help identify
+members of gene families.
+
+For more information, visit http://blast.ncbi.nlm.nih.gov
+
+
+-------- LICENCE ------------
+
+
+                            PUBLIC DOMAIN NOTICE
+               National Center for Biotechnology Information
+
+  This software/database is a "United States Government Work" under the
+  terms of the United States Copyright Act.  It was written as part of
+  the author's official duties as a United States Government employee and
+  thus cannot be copyrighted.  This software/database is freely available
+  to the public for use. The National Library of Medicine and the U.S.
+  Government have not placed any restriction on its use or reproduction.
+
+  Although all reasonable efforts have been taken to ensure the accuracy
+  and reliability of the software and data, the NLM and the U.S.
+  Government do not and cannot warrant the performance or results that
+  may be obtained by using this software or data. The NLM and the U.S.
+  Government disclaim all warranties, express or implied, including
+  warranties of performance, merchantability or fitness for any particular
+  purpose.
+
+  Please cite the author in any work or product based on this material.

--- a/repository_dependencies.xml	Mon Mar 04 04:18:28 2013 -0500
+++ b/repository_dependencies.xml	Mon Mar 04 23:56:17 2013 -0500
@@ -1,9 +1,4 @@
 <?xml version="1.0"?>
-<!-- <repositories description="protk-omssa requires the protk rubygem to install omssa">
-     <repository toolshed="http://10.211.55.28:9009" name="galaxy_protk" owner="iracooke" changeset_revision="2562efef05cb"/>
-</repositories>
- -->
-
-  <repositories description="Requires the protk rubygem to install omssa">
-     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="51f7c347c955"/>
+ <repositories description="Requires the protk rubygem to perform the install">
+     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="dac478a72c1d"/>
 </repositories>
\ No newline at end of file

--- a/tool_dependencies.xml	Mon Mar 04 04:18:28 2013 -0500
+++ b/tool_dependencies.xml	Mon Mar 04 23:56:17 2013 -0500
@@ -4,7 +4,7 @@
         <install version="1.0">
             <actions>
                 <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
-                <action type="shell_command">sh install_blast.sh $INSTALL_DIR 1.1.9</action>
+                <action type="shell_command">sh install_blast.sh $INSTALL_DIR 1.2.0</action>
                 <action type="move_file">
                     <source>install_blast.sh</source>
                     <destination>$INSTALL_DIR</destination>
@@ -16,7 +16,7 @@
             </actions>
         </install>
         <readme>
-            Installs OMSSA via the protk installer
+            Installs BLAST via the protk installer
         </readme>
     </package>